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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aet:A (2.1) BS02 1MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    2 1duo:A (2.0) BS02 1MZ 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10813811
    3 1lsx:A (2.7) BS02 1MZ 2.7.13.3 GO:0006355 ... P23222 12390021
    4 2h7r:A (2.1) BS02 1MZ 1.14.15.1 GO:0004497 ... P00183 16943206 MOAD: Kd=55.9uM
    5 4hez:A (1.3446) BS02 1MZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    6 4hez:A (1.3446) BS03 1MZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    7 4hez:A (1.3446) BS04 1MZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    8 4hez:A (1.3446) BS05 1MZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    9 4hez:A (1.3446) BS06 1MZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25075329
    10 4jo5:A (1.98) BS02 1MZ N/A GO:0005975 ... N/A 23832198
    11 5ixv:A (2.3) BS02 1MZ ? GO:0020037 ... Q8YUQ7 N/A
    12 5ixv:B (2.3) BS02 1MZ ? GO:0020037 ... Q8YUQ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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