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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3irm:A (2.1) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    2 3irm:B (2.1) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    3 3irm:C (2.1) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    4 3irm:D (2.1) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    5 3irn:A (2.6) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    6 3irn:B (2.6) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    7 3irn:C (2.6) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    8 3irn:D (2.6) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q27793 N/A
    9 3um6:A (2.65) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A7UD81 22526319 BindingDB: Ki=1.5nM
    10 3um6:B (2.65) BS02 1CY 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A7UD81 22526319 BindingDB: Ki=1.5nM
    11 3um8:A (2.6) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A7UD81 22526319 BindingDB: Ki=1.5nM
    12 3um8:B (2.6) BS01 1CY 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A7UD81 22526319 BindingDB: Ki=1.5nM
    13 4kne:A (2.0) BS01 1CY 1.5.1.3 GO:0004146 ... P9WNX1 24210757 MOAD: Kd=1.26uM
    PDBbind: -logKd/Ki=5.90, Kd=1.26uM
    14 4kne:B (2.0) BS01 1CY 1.5.1.3 GO:0004146 ... P9WNX1 24210757 MOAD: Kd=1.26uM
    15 6hnc:A (1.5) BS02 1CY ? GO:0000166 ... O76290 31012301 MOAD: ic50=31.6uM
    16 6hnc:B (1.5) BS02 1CY ? GO:0000166 ... O76290 31012301 MOAD: ic50=31.6uM
    17 6hnc:D (1.5) BS02 1CY ? GO:0000166 ... O76290 31012301 MOAD: ic50=31.6uM
    18 6nnh:A (1.523) BS01 1CY 1.5.1.3 GO:0004146 ... P9WNX1 31282477
    19 6nnh:B (1.523) BS01 1CY 1.5.1.3 GO:0004146 ... P9WNX1 31282477
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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