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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4gki:A (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273 PDBbind: -logKd/Ki=4.46, Ki=34.4uM
    2 4gki:B (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    3 4gki:C (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    4 4gki:D (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    5 4gki:E (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    6 4gki:F (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    7 4gki:G (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    8 4gki:H (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    9 4gki:I (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    10 4gki:J (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    11 4gki:K (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    12 4gki:L (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    13 4lgh:A (2.84) BS01 0JN 2.7.10.2 GO:0004672 ... P00523 23841803 PDBbind: -logKd/Ki=8.70, IC50=2nM
    BindingDB: IC50=620nM
    14 4lgh:B (2.84) BS01 0JN 2.7.10.2 GO:0004672 ... P00523 23841803 BindingDB: IC50=620nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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