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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3tzf:B (2.1) BS02 08D 2.5.1.15 GO:0004156 ... A0A2S9PLG4 22383850
    2 6y08:A (2.297) BS02 08D 2.1.1.45 GO:0000900 ... P07607 N/A
    3 6y08:B (2.297) BS03 08D 2.1.1.45 GO:0000900 ... P07607 N/A
    4 6ysx:H (1.48) BS03 08D 3.4.21.5 GO:0004252 ... P00734 N/A
    5 8ak6:A (1.98) BS03 08D 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    6 8ak6:B (1.98) BS03 08D 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    7 8opu:A (3.04) BS01 08D 1.1.1.35 GO:0000166 ... O53872 39012716
    8 8opu:B (3.04) BS01 08D 1.1.1.35 GO:0000166 ... O53872 39012716
    9 8opu:B (3.04) BS02 08D 1.1.1.35 GO:0000166 ... O53872 39012716
    10 8opu:C (3.04) BS01 08D 2.3.1.- GO:0005886 ... O53871 39012716
    11 8opu:D (3.04) BS01 08D 2.3.1.- GO:0005886 ... O53871 39012716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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