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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    712001 8yop:Lj (2.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    712002 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    712003 8yop:Lk (2.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    712004 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    712005 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    712006 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    712007 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    712008 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    712009 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    712010 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    712011 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    712012 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    712013 8yop:Ls (2.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    712014 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    712015 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    712016 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    712017 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    712018 8yop:SD (2.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    712019 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    712020 8yop:SF (2.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    712021 8yop:SG (2.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    712022 8yop:SH (2.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    712023 8yop:SI (2.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    712024 8yop:SI (2.2) BS02 rna N/A GO:0000462 ... P62241 38942792
    712025 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    712026 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    712027 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    712028 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    712029 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    712030 8yop:SN (2.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    712031 8yop:SN (2.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    712032 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    712033 8yop:SP (2.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    712034 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    712035 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    712036 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    712037 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    712038 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    712039 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    712040 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    712041 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    712042 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    712043 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    712044 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    712045 8yop:Sb (2.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    712046 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    712047 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    712048 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    712049 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    712050 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    712051 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    712052 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    712053 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    712054 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    712055 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    712056 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    712057 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    712058 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    712059 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    712060 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    712061 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    712062 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    712063 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    712064 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    712065 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    712066 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    712067 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    712068 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    712069 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    712070 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    712071 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    712072 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    712073 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    712074 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    712075 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9    		 38718132
    712076 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 N/A
    712077 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 N/A
    712078 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 N/A
    712079 8ysa:A (1.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTD1 N/A
    712080 8ysx:A (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    712081 8ysx:F (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    712082 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    712083 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    712084 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    712085 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    712086 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    712087 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    712088 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    712089 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    712090 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    712091 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    712092 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    712093 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    712094 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    712095 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    712096 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    712097 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    712098 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    712099 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    712100 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    712101 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    712102 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    712103 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    712104 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    712105 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    712106 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    712107 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    712108 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    712109 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    712110 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    712111 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    712112 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    712113 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    712114 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    712115 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    712116 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    712117 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    712118 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    712119 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    712120 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    712121 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    712122 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712123 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712124 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712125 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    712126 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    712127 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712128 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712129 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    712130 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    712131 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712132 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712133 8yu9:B (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    712134 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    712135 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    712136 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712137 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712138 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712139 8yu9:D (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    712140 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    712141 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712142 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712143 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712144 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    712145 8yua:B (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    712146 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712147 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    712148 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    712149 8yua:D (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    712150 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712151 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712152 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712153 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712154 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712155 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712156 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712157 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712158 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712159 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712160 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712161 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    712162 8yut:R (2.7) BS01 A1D67 ? GO:0004930 ... P25021 38647423
    712163 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    712164 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    712165 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    712166 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    712167 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    712168 8yv8:A (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    712169 8yv8:A (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    712170 8yv8:B (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    712171 8yv8:B (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    712172 8yv8:C (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    712173 8yv8:C (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    712174 8yv8:D (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    712175 8yv8:D (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    712176 8yv8:E (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    712177 8yv8:E (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    712178 8yv8:F (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    712179 8yv8:F (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    712180 8yv8:G (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    712181 8yv8:G (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    712182 8yv8:H (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    712183 8yv8:H (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    712184 8yvg:A (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    712185 8yvg:F (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    712186 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    712187 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    712188 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    712189 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    712190 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    712191 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    712192 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    712193 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    712194 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    712195 8z1l:A (3.4) BS01 A1LX4 N/A GO:0003779 ... P23975 39048818
    712196 8z38:A (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    712197 8z38:B (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    712198 8z3s:A (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    712199 8z3s:A (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    712200 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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