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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38601 1rvv:Z (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    38602 1rvw:A (2.5) BS01 HEM ? GO:0004601 ... P69905 9649306
    38603 1rvw:B (2.5) BS01 HEM ? GO:0004601 ... P68871 9649306
    38604 1rvx:A (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    38605 1rvx:C (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    38606 1rvx:E (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    38607 1rvx:G (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    38608 1rvx:I (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    38609 1rvx:K (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    38610 1rvy:A (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    38611 1rvy:B (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    38612 1rvy:B (2.9) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    38613 1rvz:A (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    38614 1rvz:A (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    38615 1rvz:C (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    38616 1rvz:C (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    38617 1rvz:E (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    38618 1rvz:E (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    38619 1rvz:G (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    38620 1rvz:G (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    38621 1rvz:I (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    38622 1rvz:I (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    38623 1rvz:K (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    38624 1rvz:K (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    38625 1rw4:A (2.5) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 14967020
    38626 1rw8:A (2.4) BS01 580 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=0.175uM
    PDBbind: -logKd/Ki=6.76, IC50=0.175uM
    BindingDB: IC50=1320nM
    38627 1rwb:A (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    38628 1rwb:B (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    38629 1rwb:E (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    38630 1rwb:F (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    38631 1rwc:A (1.9) BS01 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    38632 1rwf:A (1.45) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    38633 1rwf:A (1.45) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    38634 1rwf:A (1.45) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    38635 1rwf:A (1.45) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    38636 1rwg:A (1.5) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    38637 1rwg:A (1.5) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    38638 1rwg:A (1.5) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    38639 1rwg:A (1.5) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    38640 1rwh:A (1.25) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    38641 1rwh:A (1.25) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    38642 1rwh:A (1.25) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    38643 1rwh:A (1.25) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    38644 1rwk:A (2.3) BS01 158 3.4.22.36 GO:0004197 ... P29466 16511067
    38645 1rwk:B (2.3) BS01 158 3.4.22.36 GO:0004197 ... P29466 16511067
    38646 1rwm:A (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    38647 1rwm:B (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    38648 1rwn:A (2.0) BS01 4QB 3.4.22.36 GO:0004197 ... P29466 16511067
    38649 1rwn:B (2.0) BS01 4QB 3.4.22.36 GO:0004197 ... P29466 16511067
    38650 1rwo:A (2.1) BS01 BTH 3.4.22.36 GO:0004197 ... P29466 16511067
    38651 1rwo:B (2.1) BS01 BTH 3.4.22.36 GO:0004197 ... P29466 16511067
    38652 1rwp:A (2.2) BS01 HQC 3.4.22.36 GO:0004197 ... P29466 16511067
    38653 1rwp:B (2.2) BS01 HQC 3.4.22.36 GO:0004197 ... P29466 16511067
    38654 1rwq:A (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=0.1nM
    38655 1rwq:B (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    BindingDB: IC50=0.1nM
    38656 1rwt:A (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38657 1rwt:A (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    38658 1rwt:A (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    38659 1rwt:A (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38660 1rwt:A (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    38661 1rwt:A (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    38662 1rwt:A (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38663 1rwt:A (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38664 1rwt:A (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38665 1rwt:A (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    38666 1rwt:A (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    38667 1rwt:A (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38668 1rwt:A (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38669 1rwt:A (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38670 1rwt:B (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38671 1rwt:B (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    38672 1rwt:B (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    38673 1rwt:B (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38674 1rwt:B (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    38675 1rwt:B (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    38676 1rwt:B (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38677 1rwt:B (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38678 1rwt:B (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38679 1rwt:B (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    38680 1rwt:B (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    38681 1rwt:B (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38682 1rwt:B (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38683 1rwt:B (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38684 1rwt:B (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    38685 1rwt:B (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    38686 1rwt:B (2.72) BS17 CHL ? GO:0009765 ... P12333 15029188
    38687 1rwt:C (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38688 1rwt:C (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    38689 1rwt:C (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    38690 1rwt:C (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38691 1rwt:C (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    38692 1rwt:C (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    38693 1rwt:C (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38694 1rwt:C (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38695 1rwt:C (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38696 1rwt:C (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    38697 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    38698 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38699 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38700 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38701 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    38702 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    38703 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38704 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    38705 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    38706 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38707 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    38708 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    38709 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38710 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38711 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38712 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    38713 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    38714 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38715 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38716 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38717 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    38718 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    38719 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38720 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    38721 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    38722 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38723 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    38724 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    38725 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38726 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38727 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38728 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    38729 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    38730 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38731 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38732 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38733 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    38734 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    38735 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38736 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    38737 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    38738 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38739 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    38740 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    38741 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38742 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38743 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38744 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    38745 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    38746 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38747 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38748 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38749 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    38750 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    38751 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38752 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    38753 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    38754 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38755 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    38756 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    38757 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38758 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38759 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38760 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    38761 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    38762 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38763 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38764 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38765 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    38766 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    38767 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38768 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    38769 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    38770 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38771 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    38772 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    38773 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38774 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38775 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38776 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    38777 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    38778 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38779 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38780 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38781 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    38782 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    38783 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38784 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    38785 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    38786 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    38787 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    38788 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    38789 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    38790 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    38791 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    38792 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    38793 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    38794 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    38795 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    38796 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    38797 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    38798 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    38799 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    38800 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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