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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    199401 5bxq:E (2.5) BS01 GDP 3.6.5.- GO:0000054 ... P62825 9533885
    199402 5bxv:A (2.1) BS01 MGP ? GO:0003723 ... P63073 26170285 BindingDB: Kd=10nM
    199403 5bxv:C (2.1) BS01 MGP ? GO:0003723 ... P63073 26170285 BindingDB: Kd=10nM
    199404 5by0:A (1.8) BS01 MG 3.1.3.- GO:0005634 ... Q04371 N/A
    199405 5by6:A (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199406 5by6:A (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199407 5by6:B (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199408 5by6:B (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199409 5by6:C (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199410 5by6:C (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199411 5by6:D (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199412 5by6:D (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... Q9NDD3 28826032
    199413 5byf:A (2.0) BS01 AMP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    199414 5byf:B (2.0) BS01 AMP 2.7.1.15 GO:0004747 ... Q9H477 N/A
    199415 5byi:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26199669
    199416 5byi:A (1.15) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26199669
    199417 5byi:A (1.15) BS03 4WA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26199669 MOAD: Ki=30.7nM
    PDBbind: -logKd/Ki=7.51, Ki=30.7nM
    BindingDB: Ki=106nM
    199418 5byt:A (2.0) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    199419 5byt:A (2.0) BS02 PRP 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    199420 5byt:B (2.0) BS01 MG 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    199421 5byt:B (2.0) BS02 PRP 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    199422 5bzb:B (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    199423 5bzb:B (2.7) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    199424 5bzb:C (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    199425 5bzb:D (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    199426 5bzb:D (2.7) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    199427 5bzc:A (1.95) BS01 4WT ? GO:0005540 ... P15379 N/A
    199428 5bze:A (1.31) BS01 68N ? GO:0005540 ... P15379 N/A
    199429 5bze:A (1.31) BS02 6BT ? GO:0005540 ... P15379 N/A
    199430 5bzf:A (2.77) BS01 4X3 ? GO:0005540 ... P15379 N/A
    199431 5bzg:A (2.19) BS01 4X6 ? GO:0005540 ... P15379 N/A
    199432 5bzh:A (1.95) BS01 4X1 ? GO:0005540 ... P15379 N/A
    199433 5bzi:A (1.32) BS01 4WU ? GO:0005540 ... P15379 N/A
    199434 5bzj:A (1.4) BS01 4WN ? GO:0005540 ... P15379 N/A
    199435 5bzk:A (1.4) BS01 4WP ? GO:0005540 ... P15379 N/A
    199436 5bzl:A (1.23) BS01 4WO ? GO:0005540 ... P15379 N/A
    199437 5bzm:A (1.25) BS01 4X8 ? GO:0005540 ... P15379 N/A
    199438 5bzn:A (1.23) BS01 4XD ? GO:0005540 ... P15379 N/A
    199439 5bzn:A (1.23) BS02 4XD ? GO:0005540 ... P15379 N/A
    199440 5bzo:A (1.22) BS01 4XC ? GO:0005540 ... P15379 N/A
    199441 5bzp:A (1.23) BS01 4XG ? GO:0005540 ... P15379 N/A
    199442 5bzq:A (1.2) BS01 4XL ? GO:0005540 ... P15379 N/A
    199443 5bzr:A (1.15) BS01 4XM ? GO:0005540 ... P15379 N/A
    199444 5bzs:A (1.5) BS01 4XK ? GO:0005540 ... P15379 N/A
    199445 5bzt:A (1.25) BS01 4XJ ? GO:0005540 ... P15379 N/A
    199446 5bzt:A (1.25) BS02 4XJ ? GO:0005540 ... P15379 N/A
    199447 5c07:D (2.11) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199448 5c07:I (2.11) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199449 5c08:D (2.332) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199450 5c08:I (2.332) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199451 5c09:D (2.475) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199452 5c09:I (2.475) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199453 5c0a:D (2.46) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199454 5c0a:I (2.46) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199455 5c0b:D (2.03) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199456 5c0b:I (2.03) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199457 5c0c:D (1.974) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199458 5c0c:I (1.974) BS01 peptide ? GO:0002250 ... A0A0B4J271
    P01848    		 27183389
    199459 5c0i:B (1.53) BS01 CA ? GO:0000139 ... P61769 27183389
    199460 5c0j:B (1.64) BS01 CA ? GO:0000139 ... P61769 27183389
    199461 5c0m:A (1.6) BS01 peptide ? GO:0000124 ... Q96ES7 26578293
    199462 5c0m:B (1.6) BS01 peptide ? GO:0000124 ... Q96ES7 26578293
    199463 5c0o:E (2.62) BS01 SAM 2.1.1.220 GO:0005575 ... Q8GBB2 26189113
    199464 5c0o:F (2.62) BS01 SAM 2.1.1.220 GO:0005575 ... Q8GBB2 26189113
    199465 5c0o:G (2.62) BS01 SAM 2.1.1.220 GO:0005575 ... Q8GBB2 26189113
    199466 5c0o:H (2.62) BS01 SAM 2.1.1.220 GO:0005575 ... Q8GBB2 26189113
    199467 5c0w:J (4.6) BS01 rna 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 26222026
    199468 5c0w:J (4.6) BS02 MG 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 26222026
    199469 5c0w:J (4.6) BS03 ZN 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 26222026
    199470 5c0w:K (4.6) BS01 rna 3.1.13.- GO:0000166 ... Q12149 26222026
    199471 5c0x:G (3.812) BS01 rna ? GO:0000176 ... Q08285 26222026
    199472 5c0x:H (3.812) BS01 rna ? GO:0000176 ... P38792 26222026
    199473 5c0x:J (3.812) BS01 rna 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 26222026
    199474 5c0x:J (3.812) BS02 ZN 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 26222026
    199475 5c0z:A (1.1236) BS01 HEC ? GO:0002931 ... P62898 31570002
    199476 5c0z:B (1.1236) BS01 HEC ? GO:0002931 ... P62898 31570002
    199477 5c0z:B (1.1236) BS02 FC6 ? GO:0002931 ... P62898 31570002
    199478 5c0z:C (1.1236) BS01 FC6 ? GO:0002931 ... P62898 31570002
    199479 5c0z:C (1.1236) BS02 HEC ? GO:0002931 ... P62898 31570002
    199480 5c0z:C (1.1236) BS03 FC6 ? GO:0002931 ... P62898 31570002
    199481 5c0z:D (1.1236) BS01 FC6 ? GO:0002931 ... P62898 31570002
    199482 5c0z:D (1.1236) BS02 HEC ? GO:0002931 ... P62898 31570002
    199483 5c18:A (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199484 5c18:A (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199485 5c18:A (3.3) BS03 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199486 5c18:A (3.3) BS04 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199487 5c18:B (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199488 5c18:B (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199489 5c18:B (3.3) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199490 5c18:B (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199491 5c18:C (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199492 5c18:C (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199493 5c18:C (3.3) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199494 5c18:C (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199495 5c18:D (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199496 5c18:D (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199497 5c18:D (3.3) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199498 5c18:D (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199499 5c18:E (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199500 5c18:E (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199501 5c18:E (3.3) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199502 5c18:E (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199503 5c18:F (3.3) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199504 5c18:F (3.3) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199505 5c18:F (3.3) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199506 5c18:F (3.3) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199507 5c1a:A (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199508 5c1a:A (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199509 5c1a:A (3.8) BS03 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199510 5c1a:A (3.8) BS04 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199511 5c1a:B (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199512 5c1a:B (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199513 5c1a:B (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199514 5c1a:B (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199515 5c1a:C (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199516 5c1a:C (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199517 5c1a:C (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199518 5c1a:C (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199519 5c1a:D (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199520 5c1a:D (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199521 5c1a:D (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199522 5c1a:D (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199523 5c1a:E (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199524 5c1a:E (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199525 5c1a:E (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199526 5c1a:E (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199527 5c1a:F (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199528 5c1a:F (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199529 5c1a:F (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199530 5c1a:F (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199531 5c1a:F (3.8) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199532 5c1a:G (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199533 5c1a:G (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199534 5c1a:G (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199535 5c1a:H (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199536 5c1a:H (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199537 5c1a:H (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199538 5c1a:H (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199539 5c1a:I (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199540 5c1a:I (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199541 5c1a:I (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199542 5c1a:I (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199543 5c1a:I (3.8) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199544 5c1a:J (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199545 5c1a:J (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199546 5c1a:J (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199547 5c1a:K (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199548 5c1a:K (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199549 5c1a:K (3.8) BS03 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199550 5c1a:L (3.8) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199551 5c1a:L (3.8) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199552 5c1a:L (3.8) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712278
    199553 5c1a:L (3.8) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199554 5c1a:L (3.8) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712278
    199555 5c1b:A (3.08) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 26712280
    199556 5c1b:A (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199557 5c1b:A (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199558 5c1b:A (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    199559 5c1b:A (3.08) BS05 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199560 5c1b:B (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199561 5c1b:B (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199562 5c1b:B (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199563 5c1b:B (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    199564 5c1b:C (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199565 5c1b:C (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199566 5c1b:C (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199567 5c1b:C (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    199568 5c1b:D (3.08) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 26712280
    199569 5c1b:D (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199570 5c1b:D (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199571 5c1b:D (3.08) BS04 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199572 5c1b:D (3.08) BS05 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    199573 5c1b:E (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199574 5c1b:E (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199575 5c1b:E (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199576 5c1b:E (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    199577 5c1b:F (3.08) BS01 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199578 5c1b:F (3.08) BS02 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199579 5c1b:F (3.08) BS03 AGS 3.6.4.6 GO:0000502 ... P55072 26712280
    199580 5c1b:F (3.08) BS04 MG 3.6.4.6 GO:0000502 ... P55072 26712280
    199581 5c1g:A (1.46) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199582 5c1g:A (1.46) BS02 DA8 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199583 5c1g:A (1.46) BS03 GDU 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199584 5c1h:A (1.55) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199585 5c1h:A (1.55) BS02 GDU 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199586 5c1h:A (1.55) BS03 DA8 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199587 5c1l:A (1.4) BS01 MN 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199588 5c1l:A (1.4) BS02 DA8 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199589 5c1l:A (1.4) BS03 GDU 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 26374898
    199590 5c1m:A (2.07) BS01 CLR ? GO:0004930 ... P42866 26245379
    199591 5c1m:A (2.07) BS02 VF1 ? GO:0004930 ... P42866 26245379
    199592 5c1o:A (2.5) BS01 ANP 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199593 5c1o:B (2.5) BS01 ANP 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199594 5c1o:B (2.5) BS02 MG 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199595 5c1o:C (2.5) BS01 ANP 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199596 5c1o:C (2.5) BS02 MG 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199597 5c1o:D (2.5) BS01 ANP 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199598 5c1o:D (2.5) BS02 MG 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199599 5c1p:B (2.4) BS01 ADP 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    199600 5c1p:C (2.4) BS01 ADP 6.3.2.4 GO:0003824 ... Q8ZIE7 26894530
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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