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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    198801 5bkj:A (3.5) BS02 YQ1 ? GO:0005886 ... O27564 37653172
    198802 5bkj:C (3.5) BS01 YQ1 ? GO:0005886 ... O27564 37653172
    198803 5bkj:C (3.5) BS02 PGW ? GO:0005886 ... O27564 37653172
    198804 5bkj:E (3.5) BS01 YQ1 ? GO:0005886 ... O27564 37653172
    198805 5bkj:E (3.5) BS02 PGW ? GO:0005886 ... O27564 37653172
    198806 5bkj:G (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    198807 5bkk:A (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    198808 5bkk:A (3.5) BS02 YQ4 ? GO:0005886 ... O27564 37653172
    198809 5bkk:C (3.5) BS01 PGW ? GO:0005886 ... O27564 37653172
    198810 5bkk:G (3.5) BS01 YQ4 ? GO:0005886 ... O27564 37653172
    198811 5bkl:A (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198812 5bkl:A (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198813 5bkl:D (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198814 5bkl:D (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198815 5bkl:D (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198816 5bkl:E (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198817 5bkl:E (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198818 5bkl:E (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198819 5bkl:E (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    198820 5bkl:F (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198821 5bkl:F (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198822 5bkl:F (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    198823 5bkl:G (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198824 5bkl:G (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198825 5bkl:G (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    198826 5bkl:GG (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198827 5bkl:GG (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198828 5bkl:GG (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198829 5bkl:GG (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    198830 5bkl:H (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198831 5bkl:HH (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198832 5bkl:HH (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198833 5bkl:HH (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198834 5bkl:HH (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    198835 5bkl:HH (2.94) BS05 MG ? GO:0005198 ... P17574 34866603
    198836 5bkl:I (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198837 5bkl:I (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198838 5bkl:I (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    198839 5bkl:II (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198840 5bkl:J (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198841 5bkl:J (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198842 5bkl:J (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198843 5bkl:JJ (2.94) BS01 MG ? GO:0005198 ... P17574 34866603
    198844 5bkl:JJ (2.94) BS02 MG ? GO:0005198 ... P17574 34866603
    198845 5bkl:K (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198846 5bkl:K (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198847 5bkl:K (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198848 5bkl:K (2.94) BS04 MG ? GO:0005198 ... P17574 34866603
    198849 5bkl:KK (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198850 5bkl:KK (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198851 5bkl:KK (2.94) BS03 MG ? GO:0005198 ... P17574 34866603
    198852 5bkl:O (2.94) BS01 rna ? GO:0005198 ... P17574 34866603
    198853 5bkl:O (2.94) BS02 rna ? GO:0005198 ... P17574 34866603
    198854 5bkl:O (2.94) BS03 rna ? GO:0005198 ... P17574 34866603
    198855 5bkn:A (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198856 5bkn:A (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    198857 5bkn:B (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    198858 5bkn:D (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198859 5bkn:D (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198860 5bkn:D (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    198861 5bkn:E (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198862 5bkn:E (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198863 5bkn:E (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    198864 5bkn:F (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198865 5bkn:F (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198866 5bkn:F (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    198867 5bkn:G (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198868 5bkn:G (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198869 5bkn:G (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    198870 5bkn:GG (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198871 5bkn:GG (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198872 5bkn:GG (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    198873 5bkn:H (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    198874 5bkn:HH (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198875 5bkn:HH (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198876 5bkn:HH (3.0) BS03 rna ? GO:0005198 ... P17574 34866603
    198877 5bkn:I (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198878 5bkn:II (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198879 5bkn:II (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    198880 5bkn:J (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198881 5bkn:J (3.0) BS02 MG ? GO:0005198 ... P17574 34866603
    198882 5bkn:JJ (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    198883 5bkn:K (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198884 5bkn:K (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198885 5bkn:K (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    198886 5bkn:K (3.0) BS04 MG ? GO:0005198 ... P17574 34866603
    198887 5bkn:K (3.0) BS05 MG ? GO:0005198 ... P17574 34866603
    198888 5bkn:KK (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198889 5bkn:L (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    198890 5bkn:M (3.0) BS01 MG ? GO:0005198 ... P17574 34866603
    198891 5bkn:O (3.0) BS01 rna ? GO:0005198 ... P17574 34866603
    198892 5bkn:O (3.0) BS02 rna ? GO:0005198 ... P17574 34866603
    198893 5bkn:O (3.0) BS03 MG ? GO:0005198 ... P17574 34866603
    198894 5bkq:A (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198895 5bkq:F (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198896 5bkq:G (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198897 5bkq:H (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198898 5bkq:II (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198899 5bkq:JJ (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198900 5bkq:K (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198901 5bkq:M (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198902 5bkq:O (3.19) BS01 MG ? GO:0005198 ... P17574 34866603
    198903 5bmg:A (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198904 5bmg:B (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198905 5bmg:D (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198906 5bmg:E (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198907 5bmg:F (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198908 5bmg:G (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198909 5bmg:H (2.2) BS01 MTN ? GO:0005618 ... P19909 26948069
    198910 5bmh:A (1.6) BS01 MTN ? GO:0005618 ... P19909 26948069
    198911 5bmv:A (2.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 26660762
    198912 5bmv:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 26660762
    198913 5bmv:B (2.5) BS01 GDP ? GO:0000226 ... P02554 26660762
    198914 5bmv:B (2.5) BS02 VLB ? GO:0000226 ... P02554 26660762 BindingDB: IC50=130nM
    198915 5bmv:C (2.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 26660762
    198916 5bmv:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 26660762
    198917 5bmv:C (2.5) BS03 VLB 3.6.5.- GO:0000226 ... P81947 26660762
    198918 5bmv:D (2.5) BS01 GDP ? GO:0000226 ... P02554 26660762
    198919 5bmy:A (2.001) BS01 GLC 5.2.1.8 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    198920 5bmy:A (2.001) BS02 GLC 5.2.1.8 GO:0005515 ... P0AEX9
    Q13526    		 27698466
    198921 5bn2:A (1.3) BS01 CA ? GO:0005789 ... F2QVG4 N/A
    198922 5bne:A (2.15) BS01 7P3 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    198923 5bne:B (2.15) BS01 7P3 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    198924 5bne:D (2.15) BS01 7P3 2.4.2.18 GO:0000162 ... P9WFX5 N/A
    198925 5bnl:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19911821
    198926 5bnl:A (2.0) BS02 2HC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19911821 BindingDB: Ki=9200nM
    198927 5bnm:A (1.7) BS01 4VK 2.3.1.180 GO:0004315 ... P0A6R0 27626097 MOAD: ic50=15uM
    PDBbind: -logKd/Ki=4.82, IC50=15uM
    198928 5bnr:A (1.89) BS01 4VL 2.3.1.180 GO:0004315 ... P0A6R0 27626097 MOAD: ic50=0.53uM
    PDBbind: -logKd/Ki=6.28, IC50=0.53uM
    198929 5bns:A (2.2) BS01 4VM 2.3.1.180 GO:0004315 ... P0A6R0 27626097 MOAD: ic50=0.095uM
    PDBbind: -logKd/Ki=7.02, IC50=0.095uM
    198930 5bns:B (2.2) BS01 4VM 2.3.1.180 GO:0004315 ... P0A6R0 27626097 MOAD: ic50=0.095uM
    PDBbind: -logKd/Ki=7.02, IC50=0.095uM
    198931 5bo2:A (2.0) BS01 7P1 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    198932 5bo2:B (2.0) BS01 7P1 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    198933 5bo3:A (1.75) BS01 7P2 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    198934 5bo3:B (1.75) BS01 7P2 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    198935 5boe:A (1.6) BS01 PEP 4.2.1.11 GO:0000015 ... O69174 26627653
    198936 5boe:A (1.6) BS02 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    198937 5boe:B (1.6) BS01 PEP 4.2.1.11 GO:0000015 ... O69174 26627653
    198938 5boe:B (1.6) BS02 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    198939 5bof:A (2.45) BS01 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    198940 5bof:B (2.45) BS01 MG 4.2.1.11 GO:0000015 ... O69174 26627653
    198941 5boj:A (1.75) BS01 4TX ? GO:0005179 ... P02766 26214366 MOAD: Kd=100nM
    PDBbind: -logKd/Ki=7.00, Kd=100nM
    BindingDB: Kd=100nM, IC50=180000nM
    198942 5boj:B (1.75) BS01 4TX ? GO:0005179 ... P02766 26214366 MOAD: Kd=100nM
    PDBbind: -logKd/Ki=7.00, Kd=100nM
    BindingDB: Kd=100nM, IC50=180000nM
    198943 5bol:A (1.981) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198944 5bol:A (1.981) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198945 5bol:A (1.981) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198946 5bol:A (1.981) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198947 5bol:A (1.981) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198948 5bol:A (1.981) BS06 1GC 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198949 5bom:A (2.0002) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198950 5bom:A (2.0002) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198951 5bom:A (2.0002) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 26243878
    198952 5bon:A (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198953 5bon:A (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198954 5bon:B (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198955 5bon:B (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198956 5bon:C (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198957 5bon:C (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198958 5bon:D (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198959 5bon:D (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198960 5bon:E (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198961 5bon:E (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198962 5bon:F (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198963 5bon:F (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198964 5bon:G (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198965 5bon:G (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198966 5bon:H (1.799) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198967 5bon:H (1.799) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 26238318
    198968 5boo:A (2.8) BS01 D65 1.3.5.2 GO:0004152 ... Q08210 26180101 BindingDB: IC50=10.0nM
    198969 5boo:A (2.8) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 26180101
    198970 5boo:B (2.8) BS01 D65 1.3.5.2 GO:0004152 ... Q08210 26180101 BindingDB: IC50=10.0nM
    198971 5boo:B (2.8) BS02 FMN 1.3.5.2 GO:0004152 ... Q08210 26180101
    198972 5bot:A (1.85) BS01 4UM 3.4.24.- GO:0004222 ... P45452 22017539 MOAD: ic50=39uM
    PDBbind: -logKd/Ki=4.41, IC50=39uM
    BindingDB: IC50=39000nM
    198973 5bot:A (1.85) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    198974 5bot:A (1.85) BS03 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    198975 5bot:A (1.85) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198976 5bot:A (1.85) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198977 5bot:A (1.85) BS06 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198978 5bot:B (1.85) BS01 4UM 3.4.24.- GO:0004222 ... P45452 22017539 MOAD: ic50=39uM
    BindingDB: IC50=39000nM
    198979 5bot:B (1.85) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    198980 5bot:B (1.85) BS03 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    198981 5bot:B (1.85) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198982 5bot:B (1.85) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198983 5bot:B (1.85) BS06 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198984 5bou:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 26242779
    198985 5bou:H (2.6) BS01 4UC 3.4.25.1 GO:0004298 ... P25043 26242779
    198986 5bou:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26242779
    198987 5bou:K (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26242779
    198988 5bou:N (2.6) BS01 4UC 3.4.25.1 GO:0000502 ... P38624 26242779
    198989 5bou:N (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P38624 26242779
    198990 5bou:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 26242779
    198991 5bou:V (2.6) BS02 4UC 3.4.25.1 GO:0004298 ... P25043 26242779
    198992 5bou:W (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 26242779
    198993 5bou:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 26242779
    198994 5bou:Z (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P23724 26242779
    198995 5bou:b (2.6) BS01 4UC 3.4.25.1 GO:0000502 ... P38624 26242779
    198996 5boy:A (2.03) BS01 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    198997 5boy:A (2.03) BS02 ZN 3.4.24.- GO:0004222 ... P45452 22017539
    198998 5boy:A (2.03) BS03 CA 3.4.24.- GO:0004222 ... P45452 22017539
    198999 5boy:A (2.03) BS04 CA 3.4.24.- GO:0004222 ... P45452 22017539
    199000 5boy:A (2.03) BS05 CA 3.4.24.- GO:0004222 ... P45452 22017539
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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