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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    197401 5b0w:A (1.7) BS02 22B N/A GO:0005216 ... N/A 27352034
    197402 5b0w:A (1.7) BS03 ILE N/A GO:0005216 ... N/A 27352034
    197403 5b0w:A (1.7) BS04 RET N/A GO:0005216 ... N/A 27352034
    197404 5b0w:B (1.7) BS01 22B N/A GO:0005216 ... N/A 27352034
    197405 5b0w:B (1.7) BS02 RET N/A GO:0005216 ... N/A 27352034
    197406 5b0w:B (1.7) BS03 RET N/A GO:0005216 ... N/A 27352034
    197407 5b0w:D (1.7) BS01 RET N/A GO:0005216 ... N/A 27352034
    197408 5b0w:D (1.7) BS02 RET N/A GO:0005216 ... N/A 27352034
    197409 5b0w:E (1.7) BS01 RET N/A GO:0005216 ... N/A 27352034
    197410 5b0w:E (1.7) BS02 22B N/A GO:0005216 ... N/A 27352034
    197411 5b0w:E (1.7) BS03 RET N/A GO:0005216 ... N/A 27352034
    197412 5b0w:F (1.7) BS01 22B N/A GO:0005216 ... N/A 27352034
    197413 5b0w:F (1.7) BS02 RET N/A GO:0005216 ... N/A 27352034
    197414 5b0w:F (1.7) BS03 RET N/A GO:0005216 ... N/A 27352034
    197415 5b0w:G (1.7) BS01 RET N/A GO:0005216 ... N/A 27352034
    197416 5b0w:G (1.7) BS02 RET N/A GO:0005216 ... N/A 27352034
    197417 5b0y:A (2.557) BS01 dna ? GO:0000786 ... Q71DI3 26694698
    197418 5b0y:A (2.557) BS02 dna ? GO:0000786 ... Q71DI3 26694698
    197419 5b0y:B (2.557) BS01 dna ? GO:0000781 ... P62805 26694698
    197420 5b0y:B (2.557) BS02 dna ? GO:0000781 ... P62805 26694698
    197421 5b0y:C (2.557) BS01 dna ? GO:0000786 ... P04908 26694698
    197422 5b0y:C (2.557) BS02 dna ? GO:0000786 ... P04908 26694698
    197423 5b0y:D (2.557) BS01 dna ? GO:0000786 ... P06899 26694698
    197424 5b0y:D (2.557) BS02 dna ? GO:0000786 ... P06899 26694698
    197425 5b0y:E (2.557) BS01 dna ? GO:0000786 ... Q71DI3 26694698
    197426 5b0y:E (2.557) BS02 dna ? GO:0000786 ... Q71DI3 26694698
    197427 5b0y:F (2.557) BS01 dna ? GO:0000781 ... P62805 26694698
    197428 5b0y:F (2.557) BS02 dna ? GO:0000781 ... P62805 26694698
    197429 5b0y:G (2.557) BS01 dna ? GO:0000786 ... P04908 26694698
    197430 5b0y:G (2.557) BS02 dna ? GO:0000786 ... P04908 26694698
    197431 5b0y:H (2.557) BS01 dna ? GO:0000786 ... P06899 26694698
    197432 5b0y:H (2.557) BS02 dna ? GO:0000786 ... P06899 26694698
    197433 5b0z:A (1.987) BS01 dna ? GO:0000786 ... Q71DI3 26694698
    197434 5b0z:A (1.987) BS02 dna ? GO:0000786 ... Q71DI3 26694698
    197435 5b0z:B (1.987) BS01 dna ? GO:0000781 ... P62805 26694698
    197436 5b0z:B (1.987) BS02 dna ? GO:0000781 ... P62805 26694698
    197437 5b0z:C (1.987) BS01 dna ? GO:0000786 ... P04908 26694698
    197438 5b0z:C (1.987) BS02 dna ? GO:0000786 ... P04908 26694698
    197439 5b0z:D (1.987) BS01 dna ? GO:0000786 ... P06899 26694698
    197440 5b0z:D (1.987) BS02 dna ? GO:0000786 ... P06899 26694698
    197441 5b0z:E (1.987) BS01 dna ? GO:0000786 ... Q71DI3 26694698
    197442 5b0z:E (1.987) BS02 dna ? GO:0000786 ... Q71DI3 26694698
    197443 5b0z:F (1.987) BS01 dna ? GO:0000781 ... P62805 26694698
    197444 5b0z:F (1.987) BS02 dna ? GO:0000781 ... P62805 26694698
    197445 5b0z:G (1.987) BS01 dna ? GO:0000786 ... P04908 26694698
    197446 5b0z:G (1.987) BS02 dna ? GO:0000786 ... P04908 26694698
    197447 5b0z:H (1.987) BS01 dna ? GO:0000786 ... P06899 26694698
    197448 5b0z:H (1.987) BS02 dna ? GO:0000786 ... P06899 26694698
    197449 5b13:G (2.094) BS01 PUB ? GO:0009507 ... F2ZAL7 N/A
    197450 5b13:H (2.094) BS01 PUB ? GO:0009507 ... F2ZAL7 N/A
    197451 5b13:I (2.094) BS01 PUB ? GO:0009507 ... F2ZAL7 N/A
    197452 5b13:J (2.094) BS01 PUB ? GO:0009507 ... F2ZAL7 N/A
    197453 5b13:K (2.094) BS01 PUB ? GO:0009507 ... F2ZAL7 N/A
    197454 5b13:L (2.094) BS01 PUB ? GO:0009507 ... F2ZAL7 N/A
    197455 5b1a:A (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197456 5b1a:A (1.5) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197457 5b1a:A (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    197458 5b1a:A (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    197459 5b1a:B (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    197460 5b1a:B (1.5) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 27605664
    197461 5b1a:C (1.5) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    197462 5b1a:F (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    197463 5b1a:J (1.5) BS01 DMU ? GO:0006123 ... P07470 27605664
    197464 5b1a:M (1.5) BS01 DMU ? GO:0006123 ... P10175 27605664
    197465 5b1a:N (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197466 5b1a:N (1.5) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197467 5b1a:N (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    197468 5b1a:N (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    197469 5b1a:O (1.5) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    197470 5b1a:O (1.5) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 27605664
    197471 5b1a:P (1.5) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    197472 5b1a:S (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    197473 5b1a:W (1.5) BS01 DMU ? GO:0006123 ... P07470 27605664
    197474 5b1a:Z (1.5) BS01 DMU ? GO:0006123 ... P10175 27605664
    197475 5b1b:A (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197476 5b1b:A (1.6) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197477 5b1b:A (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    197478 5b1b:A (1.6) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    197479 5b1b:B (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    197480 5b1b:B (1.6) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 27605664
    197481 5b1b:C (1.6) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    197482 5b1b:F (1.6) BS01 ZN ? GO:0005740 ... P00428 27605664
    197483 5b1b:J (1.6) BS01 DMU ? GO:0006123 ... P07470 27605664
    197484 5b1b:L (1.6) BS01 DMU ? GO:0006123 ... P00430 27605664
    197485 5b1b:M (1.6) BS01 DMU ? GO:0006123 ... P10175 27605664
    197486 5b1b:N (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197487 5b1b:N (1.6) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 27605664
    197488 5b1b:N (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    197489 5b1b:N (1.6) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    197490 5b1b:O (1.6) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 27605664
    197491 5b1b:O (1.6) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 27605664
    197492 5b1b:O (1.6) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 27605664
    197493 5b1b:P (1.6) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 27605664
    197494 5b1b:Q (1.6) BS01 DMU ? GO:0006123 ... P00423 27605664
    197495 5b1b:S (1.6) BS01 ZN ? GO:0005740 ... P00428 27605664
    197496 5b1b:W (1.6) BS01 DMU ? GO:0006123 ... P07470 27605664
    197497 5b1b:W (1.6) BS02 DMU ? GO:0006123 ... P07470 27605664
    197498 5b1b:Z (1.6) BS01 DMU ? GO:0006123 ... P10175 27605664
    197499 5b1i:A (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197500 5b1i:B (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197501 5b1i:C (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197502 5b1i:D (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197503 5b1i:E (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197504 5b1i:F (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197505 5b1i:G (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197506 5b1i:H (3.3) BS01 AA5 4.2.1.22 GO:0004122 ... F9UT54 28127810
    197507 5b1j:A (3.0) BS01 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    197508 5b1j:A (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    197509 5b1j:B (3.0) BS01 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    197510 5b1j:B (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    197511 5b1j:C (3.0) BS01 CU ? GO:0005507 ... A7VL37 N/A
    197512 5b1k:A (1.35) BS01 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    197513 5b1k:A (1.35) BS02 CU 1.7.2.1 GO:0005507 ... O68601 N/A
    197514 5b1l:A (2.35) BS01 dna ? GO:0000786 ... P68433 28099840
    197515 5b1l:A (2.35) BS02 dna ? GO:0000786 ... P68433 28099840
    197516 5b1l:B (2.35) BS01 dna ? GO:0000786 ... P62806 28099840
    197517 5b1l:B (2.35) BS02 dna ? GO:0000786 ... P62806 28099840
    197518 5b1l:C (2.35) BS01 dna ? GO:0000786 ... C0HKE1 28099840
    197519 5b1l:C (2.35) BS02 dna ? GO:0000786 ... C0HKE1 28099840
    197520 5b1l:D (2.35) BS01 dna ? GO:0000786 ... Q9D2U9 28099840
    197521 5b1l:D (2.35) BS02 dna ? GO:0000786 ... Q9D2U9 28099840
    197522 5b1l:E (2.35) BS01 dna ? GO:0000786 ... P68433 28099840
    197523 5b1l:E (2.35) BS02 dna ? GO:0000786 ... P68433 28099840
    197524 5b1l:F (2.35) BS01 dna ? GO:0000786 ... P62806 28099840
    197525 5b1l:F (2.35) BS02 dna ? GO:0000786 ... P62806 28099840
    197526 5b1l:G (2.35) BS01 dna ? GO:0000786 ... C0HKE1 28099840
    197527 5b1l:G (2.35) BS02 dna ? GO:0000786 ... C0HKE1 28099840
    197528 5b1l:H (2.35) BS01 dna ? GO:0000786 ... Q9D2U9 28099840
    197529 5b1l:H (2.35) BS02 dna ? GO:0000786 ... Q9D2U9 28099840
    197530 5b1m:A (2.34) BS01 dna ? GO:0000786 ... P68433 28099840
    197531 5b1m:A (2.34) BS02 dna ? GO:0000786 ... P68433 28099840
    197532 5b1m:B (2.34) BS01 dna ? GO:0000786 ... P62806 28099840
    197533 5b1m:B (2.34) BS02 dna ? GO:0000786 ... P62806 28099840
    197534 5b1m:C (2.34) BS01 dna ? GO:0000786 ... C0HKE1 28099840
    197535 5b1m:C (2.34) BS02 dna ? GO:0000786 ... C0HKE1 28099840
    197536 5b1m:D (2.34) BS01 dna ? GO:0000786 ... Q9D2U9 28099840
    197537 5b1m:D (2.34) BS02 dna ? GO:0000786 ... Q9D2U9 28099840
    197538 5b1m:E (2.34) BS01 dna ? GO:0000786 ... P68433 28099840
    197539 5b1m:E (2.34) BS02 dna ? GO:0000786 ... P68433 28099840
    197540 5b1m:F (2.34) BS01 dna ? GO:0000786 ... P62806 28099840
    197541 5b1m:F (2.34) BS02 dna ? GO:0000786 ... P62806 28099840
    197542 5b1m:G (2.34) BS01 dna ? GO:0000786 ... C0HKE1 28099840
    197543 5b1m:G (2.34) BS02 dna ? GO:0000786 ... C0HKE1 28099840
    197544 5b1m:H (2.34) BS01 dna ? GO:0000786 ... Q9D2U9 28099840
    197545 5b1m:H (2.34) BS02 dna ? GO:0000786 ... Q9D2U9 28099840
    197546 5b24:A (3.6) BS01 dna ? GO:0000786 ... P68431 26837048
    197547 5b24:A (3.6) BS02 dna ? GO:0000786 ... P68431 26837048
    197548 5b24:B (3.6) BS01 dna ? GO:0000781 ... P62805 26837048
    197549 5b24:B (3.6) BS02 dna ? GO:0000781 ... P62805 26837048
    197550 5b24:C (3.6) BS01 dna ? GO:0000786 ... P04908 26837048
    197551 5b24:C (3.6) BS02 dna ? GO:0000786 ... P04908 26837048
    197552 5b24:D (3.6) BS01 dna ? GO:0000786 ... P06899 26837048
    197553 5b24:D (3.6) BS02 dna ? GO:0000786 ... P06899 26837048
    197554 5b24:E (3.6) BS01 dna ? GO:0000786 ... P68431 26837048
    197555 5b24:E (3.6) BS02 dna ? GO:0000786 ... P68431 26837048
    197556 5b24:F (3.6) BS01 dna ? GO:0000781 ... P62805 26837048
    197557 5b24:F (3.6) BS02 dna ? GO:0000781 ... P62805 26837048
    197558 5b24:G (3.6) BS01 dna ? GO:0000786 ... P04908 26837048
    197559 5b24:G (3.6) BS02 dna ? GO:0000786 ... P04908 26837048
    197560 5b24:H (3.6) BS01 dna ? GO:0000786 ... P06899 26837048
    197561 5b24:H (3.6) BS02 dna ? GO:0000786 ... P06899 26837048
    197562 5b2d:A (2.177) BS01 GLC 3.2.1.18 GO:0004308 ... Q9WAF5 27671656
    197563 5b2d:A (2.177) BS02 SIA 3.2.1.18 GO:0004308 ... Q9WAF5 27671656
    197564 5b2d:B (2.177) BS01 GLC 3.2.1.18 GO:0004308 ... Q9WAF5 27671656
    197565 5b2d:B (2.177) BS02 SIA 3.2.1.18 GO:0004308 ... Q9WAF5 27671656
    197566 5b2i:A (3.0) BS01 dna ? GO:0000786 ... P68431 27419055
    197567 5b2i:A (3.0) BS02 dna ? GO:0000786 ... P68431 27419055
    197568 5b2i:B (3.0) BS01 dna ? GO:0000781 ... P62805 27419055
    197569 5b2i:C (3.0) BS01 dna ? GO:0000786 ... P04908 27419055
    197570 5b2i:C (3.0) BS02 dna ? GO:0000786 ... P04908 27419055
    197571 5b2i:D (3.0) BS01 dna ? GO:0000786 ... P06899 27419055
    197572 5b2i:D (3.0) BS02 dna ? GO:0000786 ... P06899 27419055
    197573 5b2i:E (3.0) BS01 dna ? GO:0000786 ... P68431 27419055
    197574 5b2i:E (3.0) BS02 dna ? GO:0000786 ... P68431 27419055
    197575 5b2i:F (3.0) BS01 dna ? GO:0000781 ... P62805 27419055
    197576 5b2i:F (3.0) BS02 dna ? GO:0000781 ... P62805 27419055
    197577 5b2i:G (3.0) BS01 dna ? GO:0000786 ... P04908 27419055
    197578 5b2i:G (3.0) BS02 dna ? GO:0000786 ... P04908 27419055
    197579 5b2i:H (3.0) BS01 dna ? GO:0000786 ... P06899 27419055
    197580 5b2i:H (3.0) BS02 dna ? GO:0000786 ... P06899 27419055
    197581 5b2j:A (2.6) BS01 dna ? GO:0000786 ... P68431 27419055
    197582 5b2j:A (2.6) BS02 dna ? GO:0000786 ... P68431 27419055
    197583 5b2j:B (2.6) BS01 dna ? GO:0000781 ... P62805 27419055
    197584 5b2j:B (2.6) BS02 dna ? GO:0000781 ... P62805 27419055
    197585 5b2j:C (2.6) BS01 dna ? GO:0000786 ... P04908 27419055
    197586 5b2j:C (2.6) BS02 dna ? GO:0000786 ... P04908 27419055
    197587 5b2j:D (2.6) BS01 dna ? GO:0000786 ... P06899 27419055
    197588 5b2j:D (2.6) BS02 dna ? GO:0000786 ... P06899 27419055
    197589 5b2j:E (2.6) BS01 dna ? GO:0000786 ... P68431 27419055
    197590 5b2j:E (2.6) BS02 dna ? GO:0000786 ... P68431 27419055
    197591 5b2j:F (2.6) BS01 dna ? GO:0000781 ... P62805 27419055
    197592 5b2j:F (2.6) BS02 dna ? GO:0000781 ... P62805 27419055
    197593 5b2j:G (2.6) BS01 dna ? GO:0000786 ... P04908 27419055
    197594 5b2j:G (2.6) BS02 dna ? GO:0000786 ... P04908 27419055
    197595 5b2j:H (2.6) BS01 dna ? GO:0000786 ... P06899 27419055
    197596 5b2j:H (2.6) BS02 dna ? GO:0000786 ... P06899 27419055
    197597 5b2n:A (1.581) BS01 RET ? GO:0007602 ... W8VZW3 27365396
    197598 5b2n:A (1.581) BS02 CL ? GO:0007602 ... W8VZW3 27365396
    197599 5b2z:A (1.56) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 27180801
    197600 5b2z:A (1.56) BS02 CA 3.6.5.2 GO:0003924 ... P01112 27180801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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