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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    197001 5aqd:R (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197002 5aqd:R (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197003 5aqd:S (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197004 5aqd:S (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197005 5aqd:S (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197006 5aqd:S (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197007 5aqd:T (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197008 5aqd:T (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197009 5aqd:T (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197010 5aqd:T (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197011 5aqd:U (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197012 5aqd:U (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197013 5aqd:U (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197014 5aqd:U (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197015 5aqd:V (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197016 5aqd:V (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197017 5aqd:V (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197018 5aqd:V (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197019 5aqd:W (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197020 5aqd:W (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197021 5aqd:W (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197022 5aqd:W (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197023 5aqd:X (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197024 5aqd:X (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197025 5aqd:X (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197026 5aqd:X (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197027 5aqe:A (1.1) BS01 VOD 3.4.21.62 GO:0004252 ... P29600 N/A
    197028 5aqe:A (1.1) BS02 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    197029 5arb:A (1.15) BS01 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    197030 5arb:A (1.15) BS02 EI3 3.4.21.62 GO:0004252 ... P29600 N/A
    197031 5arc:A (1.1) BS01 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    197032 5arc:A (1.1) BS02 EI3 3.4.21.62 GO:0004252 ... P29600 N/A
    197033 5ard:A (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    197034 5ard:A (1.55) BS02 EI3 3.4.21.62 GO:0004252 ... P29600 N/A
    197035 5arf:A (1.92) BS01 I9H 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367 MOAD: Kd=540nM
    PDBbind: -logKd/Ki=6.27, Kd=540nM
    197036 5arf:A (1.92) BS02 SAM 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197037 5arf:A (1.92) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197038 5arf:A (1.92) BS04 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197039 5arf:A (1.92) BS05 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197040 5arg:A (1.99) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197041 5arg:A (1.99) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197042 5arg:A (1.99) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197043 5arg:A (1.99) BS04 H41 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    197044 5arg:A (1.99) BS05 SAM 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 27075367
    197045 5at1:B (2.6) BS01 ZN ? GO:0005515 ... P0A7F3 2271528
    197046 5at1:B (2.6) BS02 CTP ? GO:0005515 ... P0A7F3 2271528
    197047 5at1:D (2.6) BS01 ZN ? GO:0005515 ... P0A7F3 2271528
    197048 5at1:D (2.6) BS02 CTP ? GO:0005515 ... P0A7F3 2271528
    197049 5av5:A (2.4) BS01 dna ? GO:0000786 ... P68431 26607036
    197050 5av5:A (2.4) BS02 dna ? GO:0000786 ... P68431 26607036
    197051 5av5:B (2.4) BS01 dna ? GO:0000781 ... P62805 26607036
    197052 5av5:B (2.4) BS02 dna ? GO:0000781 ... P62805 26607036
    197053 5av5:C (2.4) BS01 dna ? GO:0000786 ... P04908 26607036
    197054 5av5:C (2.4) BS02 dna ? GO:0000786 ... P04908 26607036
    197055 5av5:D (2.4) BS01 dna ? GO:0000786 ... P06899 26607036
    197056 5av5:D (2.4) BS02 dna ? GO:0000786 ... P06899 26607036
    197057 5av5:E (2.4) BS01 dna ? GO:0000786 ... P68431 26607036
    197058 5av5:E (2.4) BS02 dna ? GO:0000786 ... P68431 26607036
    197059 5av5:F (2.4) BS01 dna ? GO:0000781 ... P62805 26607036
    197060 5av5:F (2.4) BS02 dna ? GO:0000781 ... P62805 26607036
    197061 5av5:G (2.4) BS01 dna ? GO:0000786 ... P04908 26607036
    197062 5av5:G (2.4) BS02 dna ? GO:0000786 ... P04908 26607036
    197063 5av5:H (2.4) BS01 dna ? GO:0000786 ... P06899 26607036
    197064 5av5:H (2.4) BS02 dna ? GO:0000786 ... P06899 26607036
    197065 5av6:A (2.2) BS01 dna ? GO:0000786 ... P68431 26607036
    197066 5av6:A (2.2) BS02 dna ? GO:0000786 ... P68431 26607036
    197067 5av6:B (2.2) BS01 dna ? GO:0000781 ... P62805 26607036
    197068 5av6:B (2.2) BS02 dna ? GO:0000781 ... P62805 26607036
    197069 5av6:C (2.2) BS01 dna ? GO:0000786 ... P04908 26607036
    197070 5av6:C (2.2) BS02 dna ? GO:0000786 ... P04908 26607036
    197071 5av6:D (2.2) BS01 dna ? GO:0000786 ... P06899 26607036
    197072 5av6:D (2.2) BS02 dna ? GO:0000786 ... P06899 26607036
    197073 5av6:E (2.2) BS01 dna ? GO:0000786 ... P68431 26607036
    197074 5av6:E (2.2) BS02 dna ? GO:0000786 ... P68431 26607036
    197075 5av6:F (2.2) BS01 dna ? GO:0000781 ... P62805 26607036
    197076 5av6:F (2.2) BS02 dna ? GO:0000781 ... P62805 26607036
    197077 5av6:G (2.2) BS01 dna ? GO:0000786 ... P04908 26607036
    197078 5av6:G (2.2) BS02 dna ? GO:0000786 ... P04908 26607036
    197079 5av6:H (2.2) BS01 dna ? GO:0000786 ... P06899 26607036
    197080 5av6:H (2.2) BS02 dna ? GO:0000786 ... P06899 26607036
    197081 5av7:A (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    197082 5av7:B (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    197083 5av7:C (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    197084 5av7:D (1.85) BS01 MAN ? GO:0005536 ... P93114 26971576
    197085 5av8:A (2.2) BS01 dna ? GO:0000786 ... P68431 26607036
    197086 5av8:A (2.2) BS02 dna ? GO:0000786 ... P68431 26607036
    197087 5av8:B (2.2) BS01 dna ? GO:0000781 ... P62805 26607036
    197088 5av8:B (2.2) BS02 dna ? GO:0000781 ... P62805 26607036
    197089 5av8:C (2.2) BS01 dna ? GO:0000786 ... P04908 26607036
    197090 5av8:C (2.2) BS02 dna ? GO:0000786 ... P04908 26607036
    197091 5av8:D (2.2) BS01 dna ? GO:0000786 ... P06899 26607036
    197092 5av8:D (2.2) BS02 dna ? GO:0000786 ... P06899 26607036
    197093 5av8:E (2.2) BS01 dna ? GO:0000786 ... P68431 26607036
    197094 5av8:E (2.2) BS02 dna ? GO:0000786 ... P68431 26607036
    197095 5av8:F (2.2) BS01 dna ? GO:0000781 ... P62805 26607036
    197096 5av8:F (2.2) BS02 dna ? GO:0000781 ... P62805 26607036
    197097 5av8:G (2.2) BS01 dna ? GO:0000786 ... P04908 26607036
    197098 5av8:G (2.2) BS02 dna ? GO:0000786 ... P04908 26607036
    197099 5av8:H (2.2) BS01 dna ? GO:0000786 ... P06899 26607036
    197100 5av8:H (2.2) BS02 dna ? GO:0000786 ... P06899 26607036
    197101 5av9:A (2.2) BS01 dna ? GO:0000786 ... P68431 26607036
    197102 5av9:A (2.2) BS02 dna ? GO:0000786 ... P68431 26607036
    197103 5av9:B (2.2) BS01 dna ? GO:0000781 ... P62805 26607036
    197104 5av9:B (2.2) BS02 dna ? GO:0000781 ... P62805 26607036
    197105 5av9:C (2.2) BS01 dna ? GO:0000786 ... P04908 26607036
    197106 5av9:C (2.2) BS02 dna ? GO:0000786 ... P04908 26607036
    197107 5av9:D (2.2) BS01 dna ? GO:0000786 ... P06899 26607036
    197108 5av9:D (2.2) BS02 dna ? GO:0000786 ... P06899 26607036
    197109 5av9:E (2.2) BS01 dna ? GO:0000786 ... P68431 26607036
    197110 5av9:E (2.2) BS02 dna ? GO:0000786 ... P68431 26607036
    197111 5av9:F (2.2) BS01 dna ? GO:0000781 ... P62805 26607036
    197112 5av9:F (2.2) BS02 dna ? GO:0000781 ... P62805 26607036
    197113 5av9:G (2.2) BS01 dna ? GO:0000786 ... P04908 26607036
    197114 5av9:G (2.2) BS02 dna ? GO:0000786 ... P04908 26607036
    197115 5av9:H (2.2) BS01 dna ? GO:0000786 ... P06899 26607036
    197116 5av9:H (2.2) BS02 dna ? GO:0000786 ... P06899 26607036
    197117 5avb:A (2.4) BS01 dna ? GO:0000786 ... P68431 26607036
    197118 5avb:A (2.4) BS02 dna ? GO:0000786 ... P68431 26607036
    197119 5avb:B (2.4) BS01 dna ? GO:0000781 ... P62805 26607036
    197120 5avb:B (2.4) BS02 dna ? GO:0000781 ... P62805 26607036
    197121 5avb:C (2.4) BS01 dna ? GO:0000786 ... P04908 26607036
    197122 5avb:C (2.4) BS02 dna ? GO:0000786 ... P04908 26607036
    197123 5avb:D (2.4) BS01 dna ? GO:0000786 ... P06899 26607036
    197124 5avb:D (2.4) BS02 dna ? GO:0000786 ... P06899 26607036
    197125 5avb:E (2.4) BS01 dna ? GO:0000786 ... P68431 26607036
    197126 5avb:E (2.4) BS02 dna ? GO:0000786 ... P68431 26607036
    197127 5avb:F (2.4) BS01 dna ? GO:0000781 ... P62805 26607036
    197128 5avb:F (2.4) BS02 dna ? GO:0000781 ... P62805 26607036
    197129 5avb:G (2.4) BS01 dna ? GO:0000786 ... P04908 26607036
    197130 5avb:G (2.4) BS02 dna ? GO:0000786 ... P04908 26607036
    197131 5avb:H (2.4) BS01 dna ? GO:0000786 ... P06899 26607036
    197132 5avb:H (2.4) BS02 dna ? GO:0000786 ... P06899 26607036
    197133 5avc:A (2.4) BS01 dna ? GO:0000786 ... P68431 26607036
    197134 5avc:A (2.4) BS02 dna ? GO:0000786 ... P68431 26607036
    197135 5avc:B (2.4) BS01 dna ? GO:0000781 ... P62805 26607036
    197136 5avc:B (2.4) BS02 dna ? GO:0000781 ... P62805 26607036
    197137 5avc:C (2.4) BS01 dna ? GO:0000786 ... P04908 26607036
    197138 5avc:C (2.4) BS02 dna ? GO:0000786 ... P04908 26607036
    197139 5avc:D (2.4) BS01 dna ? GO:0000786 ... P06899 26607036
    197140 5avc:D (2.4) BS02 dna ? GO:0000786 ... P06899 26607036
    197141 5avc:E (2.4) BS01 dna ? GO:0000786 ... P68431 26607036
    197142 5avc:E (2.4) BS02 dna ? GO:0000786 ... P68431 26607036
    197143 5avc:F (2.4) BS01 dna ? GO:0000781 ... P62805 26607036
    197144 5avc:F (2.4) BS02 dna ? GO:0000781 ... P62805 26607036
    197145 5avc:G (2.4) BS01 dna ? GO:0000786 ... P04908 26607036
    197146 5avc:G (2.4) BS02 dna ? GO:0000786 ... P04908 26607036
    197147 5avc:H (2.4) BS01 dna ? GO:0000786 ... P06899 26607036
    197148 5avc:H (2.4) BS02 dna ? GO:0000786 ... P06899 26607036
    197149 5avn:A (1.03) BS01 MN 5.3.1.5 GO:0000287 ... P24300 22435400
    197150 5avn:A (1.03) BS02 CA 5.3.1.5 GO:0000287 ... P24300 22435400
    197151 5avn:B (1.03) BS01 MN 5.3.1.5 GO:0000287 ... P24300 22435400
    197152 5avn:B (1.03) BS02 CA 5.3.1.5 GO:0000287 ... P24300 22435400
    197153 5avq:A (2.6) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197154 5avq:A (2.6) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197155 5avq:A (2.6) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197156 5avr:A (2.7) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197157 5avr:A (2.7) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197158 5avr:A (2.7) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197159 5avs:A (2.9) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197160 5avs:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197161 5avs:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197162 5avt:A (2.9) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197163 5avt:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197164 5avt:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197165 5avu:A (2.55) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197166 5avu:A (2.55) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197167 5avu:A (2.55) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197168 5avv:A (2.9) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197169 5avv:A (2.9) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197170 5avv:A (2.9) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197171 5avw:A (2.6) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197172 5avw:A (2.6) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197173 5avw:A (2.6) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197174 5avx:A (3.3) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197175 5avx:A (3.3) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197176 5avx:A (3.3) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197177 5avy:A (3.45) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197178 5avy:A (3.45) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197179 5avy:A (3.45) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197180 5avz:A (3.2) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197181 5avz:A (3.2) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197182 5avz:A (3.2) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197183 5avz:B (3.2) BS01 CLR ? GO:0001671 ... C4IX13 26258479
    197184 5aw0:A (3.3) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197185 5aw0:A (3.3) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197186 5aw0:A (3.3) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197187 5aw1:A (3.35) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197188 5aw1:A (3.35) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197189 5aw1:A (3.35) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197190 5aw2:A (3.2) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197191 5aw2:A (3.2) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197192 5aw2:A (3.2) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197193 5aw3:A (3.35) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197194 5aw3:A (3.35) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197195 5aw3:A (3.35) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197196 5aw3:B (3.35) BS01 CLR ? GO:0001671 ... C4IX13 26258479
    197197 5aw4:A (2.8) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    197198 5aw4:A (2.8) BS02 MG ? GO:0000166 ... Q4H132 26258479
    197199 5aw4:A (2.8) BS03 CLR ? GO:0000166 ... Q4H132 26258479
    197200 5aw5:A (2.9) BS01 MF4 ? GO:0000166 ... Q4H132 26258479
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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