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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    196801 5apn:C (3.91) BS01 rna ? GO:0002181 ... P10664 26709046
    196802 5apn:C (3.91) BS02 rna ? GO:0002181 ... P10664 26709046
    196803 5apn:D (3.91) BS01 rna ? GO:0000027 ... P26321 26709046
    196804 5apn:D (3.91) BS02 rna ? GO:0000027 ... P26321 26709046
    196805 5apn:E (3.91) BS01 rna ? GO:0000027 ... Q02326 26709046
    196806 5apn:F (3.91) BS01 rna ? GO:0000463 ... P05737 26709046
    196807 5apn:F (3.91) BS02 rna ? GO:0000463 ... P05737 26709046
    196808 5apn:G (3.91) BS01 rna ? GO:0000470 ... P17076 26709046
    196809 5apn:G (3.91) BS02 rna ? GO:0000470 ... P17076 26709046
    196810 5apn:H (3.91) BS01 rna ? GO:0002181 ... P05738 26709046
    196811 5apn:I (3.91) BS01 rna ? GO:0000027 ... P41805 26709046
    196812 5apn:I (3.91) BS02 rna ? GO:0000027 ... P41805 26709046
    196813 5apn:J (3.91) BS01 rna ? GO:0000027 ... P0C0W9 26709046
    196814 5apn:J (3.91) BS02 rna ? GO:0000027 ... P0C0W9 26709046
    196815 5apn:L (3.91) BS01 rna ? GO:0002181 ... Q12690 26709046
    196816 5apn:L (3.91) BS02 rna ? GO:0002181 ... Q12690 26709046
    196817 5apn:M (3.91) BS01 rna ? GO:0000027 ... P36105 26709046
    196818 5apn:N (3.91) BS01 rna ? GO:0002181 ... P05748 26709046
    196819 5apn:N (3.91) BS02 rna ? GO:0002181 ... P05748 26709046
    196820 5apn:O (3.91) BS01 rna ? GO:0000470 ... P26784 26709046
    196821 5apn:P (3.91) BS01 rna ? GO:0000448 ... P05740 26709046
    196822 5apn:P (3.91) BS02 rna ? GO:0000448 ... P05740 26709046
    196823 5apn:Q (3.91) BS01 rna ? GO:0002181 ... P0CX49 26709046
    196824 5apn:R (3.91) BS01 rna ? GO:0002181 ... P0CX82 26709046
    196825 5apn:S (3.91) BS01 rna ? GO:0002181 ... P0CX23 26709046
    196826 5apn:S (3.91) BS02 rna ? GO:0002181 ... P0CX23 26709046
    196827 5apn:T (3.91) BS01 rna ? GO:0002181 ... Q02753 26709046
    196828 5apn:T (3.91) BS02 rna ? GO:0002181 ... Q02753 26709046
    196829 5apn:U (3.91) BS01 rna ? GO:0002181 ... P05749 26709046
    196830 5apn:V (3.91) BS01 rna ? GO:0002181 ... P0CX41 26709046
    196831 5apn:W (3.91) BS01 rna ? GO:0002181 ... P04449 26709046
    196832 5apn:X (3.91) BS01 rna ? GO:0000027 ... P04456 26709046
    196833 5apn:X (3.91) BS02 rna ? GO:0000027 ... P04456 26709046
    196834 5apn:Y (3.91) BS01 rna ? GO:0002181 ... P05743 26709046
    196835 5apn:Y (3.91) BS02 rna ? GO:0002181 ... P05743 26709046
    196836 5apn:Z (3.91) BS01 rna ? GO:0002181 ... P0C2H6 26709046
    196837 5apn:a (3.91) BS01 rna ? GO:0002181 ... P02406 26709046
    196838 5apn:b (3.91) BS01 rna ? GO:0002181 ... P05747 26709046
    196839 5apn:c (3.91) BS01 rna ? GO:0002181 ... P14120 26709046
    196840 5apn:d (3.91) BS01 rna ? GO:0002181 ... P0C2H8 26709046
    196841 5apn:e (3.91) BS01 rna ? GO:0002181 ... P38061 26709046
    196842 5apn:f (3.91) BS01 rna ? GO:0000027 ... P05744 26709046
    196843 5apn:g (3.91) BS01 rna ? GO:0002181 ... P87262 26709046
    196844 5apn:h (3.91) BS01 rna ? GO:0000463 ... P0CX84 26709046
    196845 5apn:h (3.91) BS02 rna ? GO:0000463 ... P0CX84 26709046
    196846 5apn:i (3.91) BS01 rna ? GO:0002181 ... P05745 26709046
    196847 5apn:j (3.91) BS01 rna ? GO:0000448 ... P49166 26709046
    196848 5apn:j (3.91) BS02 rna ? GO:0000448 ... P49166 26709046
    196849 5apn:j (3.91) BS03 MG ? GO:0000448 ... P49166 26709046
    196850 5apn:j (3.91) BS04 ZN ? GO:0000448 ... P49166 26709046
    196851 5apn:k (3.91) BS01 rna ? GO:0002181 ... P49167 26709046
    196852 5apn:l (3.91) BS01 rna ? GO:0002181 ... P04650 26709046
    196853 5apn:l (3.91) BS02 rna ? GO:0002181 ... P04650 26709046
    196854 5apn:m (3.91) BS01 rna ? GO:0000027 ... P0CH08 26709046
    196855 5apn:m (3.91) BS02 ZN ? GO:0000027 ... P0CH08 26709046
    196856 5apn:o (3.91) BS01 rna ? GO:0002181 ... P0CX27 26709046
    196857 5apn:o (3.91) BS02 ZN ? GO:0002181 ... P0CX27 26709046
    196858 5apn:p (3.91) BS01 rna ? GO:0002181 ... P0CX25 26709046
    196859 5apn:p (3.91) BS02 ZN ? GO:0002181 ... P0CX25 26709046
    196860 5apn:q (3.91) BS01 rna ? GO:0000027 ... P05317 26709046
    196861 5apn:x (3.91) BS01 rna 3.-.-.- GO:0000055 ... Q03862 26709046
    196862 5apn:x (3.91) BS02 rna 3.-.-.- GO:0000055 ... Q03862 26709046
    196863 5apn:y (3.91) BS01 rna ? GO:0000278 ... P38344 26709046
    196864 5apn:y (3.91) BS02 ZN ? GO:0000278 ... P38344 26709046
    196865 5apn:y (3.91) BS03 ZN ? GO:0000278 ... P38344 26709046
    196866 5apo:A (3.41) BS01 rna ? GO:0002181 ... P0CX45 26709046
    196867 5apo:B (3.41) BS01 rna ? GO:0000027 ... P14126 26709046
    196868 5apo:C (3.41) BS01 rna ? GO:0002181 ... P10664 26709046
    196869 5apo:C (3.41) BS02 rna ? GO:0002181 ... P10664 26709046
    196870 5apo:D (3.41) BS01 rna ? GO:0000027 ... P26321 26709046
    196871 5apo:D (3.41) BS02 rna ? GO:0000027 ... P26321 26709046
    196872 5apo:E (3.41) BS01 rna N/A GO:0003735 ... N/A 26709046
    196873 5apo:F (3.41) BS01 rna ? GO:0000463 ... P05737 26709046
    196874 5apo:F (3.41) BS02 rna ? GO:0000463 ... P05737 26709046
    196875 5apo:G (3.41) BS01 rna ? GO:0000470 ... P17076 26709046
    196876 5apo:G (3.41) BS02 rna ? GO:0000470 ... P17076 26709046
    196877 5apo:H (3.41) BS01 rna ? GO:0002181 ... P05738 26709046
    196878 5apo:I (3.41) BS01 rna ? GO:0000027 ... P41805 26709046
    196879 5apo:I (3.41) BS02 rna ? GO:0000027 ... P41805 26709046
    196880 5apo:J (3.41) BS01 rna ? GO:0000027 ... P0C0W9 26709046
    196881 5apo:J (3.41) BS02 rna ? GO:0000027 ... P0C0W9 26709046
    196882 5apo:L (3.41) BS01 rna ? GO:0002181 ... Q12690 26709046
    196883 5apo:L (3.41) BS02 rna ? GO:0002181 ... Q12690 26709046
    196884 5apo:M (3.41) BS01 rna ? GO:0000027 ... P36105 26709046
    196885 5apo:N (3.41) BS01 rna ? GO:0002181 ... P05748 26709046
    196886 5apo:N (3.41) BS02 rna ? GO:0002181 ... P05748 26709046
    196887 5apo:O (3.41) BS01 rna ? GO:0000470 ... P26784 26709046
    196888 5apo:P (3.41) BS01 rna ? GO:0000448 ... P05740 26709046
    196889 5apo:P (3.41) BS02 rna ? GO:0000448 ... P05740 26709046
    196890 5apo:Q (3.41) BS01 rna ? GO:0002181 ... P0CX49 26709046
    196891 5apo:R (3.41) BS01 rna ? GO:0002181 ... P0CX82 26709046
    196892 5apo:S (3.41) BS01 rna ? GO:0002181 ... P0CX23 26709046
    196893 5apo:S (3.41) BS02 rna ? GO:0002181 ... P0CX23 26709046
    196894 5apo:T (3.41) BS01 rna ? GO:0002181 ... Q02753 26709046
    196895 5apo:T (3.41) BS02 rna ? GO:0002181 ... Q02753 26709046
    196896 5apo:U (3.41) BS01 rna ? GO:0002181 ... P05749 26709046
    196897 5apo:V (3.41) BS01 rna ? GO:0002181 ... P0CX41 26709046
    196898 5apo:W (3.41) BS01 rna ? GO:0002181 ... P04449 26709046
    196899 5apo:X (3.41) BS01 rna ? GO:0000027 ... P04456 26709046
    196900 5apo:X (3.41) BS02 rna ? GO:0000027 ... P04456 26709046
    196901 5apo:Y (3.41) BS01 rna ? GO:0002181 ... P05743 26709046
    196902 5apo:Y (3.41) BS02 rna ? GO:0002181 ... P05743 26709046
    196903 5apo:Z (3.41) BS01 rna ? GO:0002181 ... P0C2H6 26709046
    196904 5apo:a (3.41) BS01 rna ? GO:0002181 ... P02406 26709046
    196905 5apo:b (3.41) BS01 rna ? GO:0002181 ... P05747 26709046
    196906 5apo:c (3.41) BS01 rna ? GO:0002181 ... P14120 26709046
    196907 5apo:d (3.41) BS01 rna ? GO:0002181 ... P0C2H8 26709046
    196908 5apo:e (3.41) BS01 rna ? GO:0002181 ... P38061 26709046
    196909 5apo:f (3.41) BS01 rna ? GO:0000027 ... P05744 26709046
    196910 5apo:g (3.41) BS01 rna ? GO:0002181 ... P87262 26709046
    196911 5apo:h (3.41) BS01 rna ? GO:0000463 ... P0CX84 26709046
    196912 5apo:h (3.41) BS02 rna ? GO:0000463 ... P0CX84 26709046
    196913 5apo:i (3.41) BS01 rna ? GO:0002181 ... P05745 26709046
    196914 5apo:j (3.41) BS01 rna ? GO:0000448 ... P49166 26709046
    196915 5apo:j (3.41) BS02 rna ? GO:0000448 ... P49166 26709046
    196916 5apo:j (3.41) BS03 ZN ? GO:0000448 ... P49166 26709046
    196917 5apo:k (3.41) BS01 rna ? GO:0002181 ... P49167 26709046
    196918 5apo:l (3.41) BS01 rna ? GO:0002181 ... P04650 26709046
    196919 5apo:l (3.41) BS02 rna ? GO:0002181 ... P04650 26709046
    196920 5apo:m (3.41) BS01 rna ? GO:0000027 ... P0CH08 26709046
    196921 5apo:m (3.41) BS02 ZN ? GO:0000027 ... P0CH08 26709046
    196922 5apo:o (3.41) BS01 rna ? GO:0002181 ... P0CX27 26709046
    196923 5apo:o (3.41) BS02 ZN ? GO:0002181 ... P0CX27 26709046
    196924 5apo:p (3.41) BS01 rna ? GO:0002181 ... P0CX25 26709046
    196925 5apo:p (3.41) BS02 ZN ? GO:0002181 ... P0CX25 26709046
    196926 5apo:q (3.41) BS01 rna ? GO:0000027 ... P05317 26709046
    196927 5apo:x (3.41) BS01 rna 3.-.-.- GO:0000055 ... Q03862 26709046
    196928 5apo:x (3.41) BS02 rna 3.-.-.- GO:0000055 ... Q03862 26709046
    196929 5aq6:A (1.79) BS01 ZN ? GO:0005737 ... P76344 26758285
    196930 5aq6:A (1.79) BS02 ZN ? GO:0005737 ... P76344 26758285
    196931 5aqd:A (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196932 5aqd:A (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196933 5aqd:A (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196934 5aqd:A (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196935 5aqd:B (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196936 5aqd:B (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196937 5aqd:B (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196938 5aqd:B (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196939 5aqd:C (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196940 5aqd:C (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196941 5aqd:C (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196942 5aqd:C (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196943 5aqd:D (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196944 5aqd:D (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196945 5aqd:D (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196946 5aqd:D (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196947 5aqd:E (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196948 5aqd:E (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196949 5aqd:E (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196950 5aqd:E (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196951 5aqd:F (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196952 5aqd:F (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196953 5aqd:F (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196954 5aqd:F (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196955 5aqd:G (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196956 5aqd:G (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196957 5aqd:G (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196958 5aqd:G (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196959 5aqd:H (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196960 5aqd:H (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196961 5aqd:H (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196962 5aqd:H (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196963 5aqd:I (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196964 5aqd:I (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196965 5aqd:I (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196966 5aqd:I (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196967 5aqd:J (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196968 5aqd:J (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196969 5aqd:J (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196970 5aqd:J (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196971 5aqd:K (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196972 5aqd:K (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196973 5aqd:K (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196974 5aqd:K (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196975 5aqd:L (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196976 5aqd:L (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196977 5aqd:L (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196978 5aqd:L (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    196979 5aqd:M (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196980 5aqd:M (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196981 5aqd:M (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196982 5aqd:M (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196983 5aqd:N (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196984 5aqd:N (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196985 5aqd:N (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196986 5aqd:N (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196987 5aqd:O (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196988 5aqd:O (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196989 5aqd:O (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196990 5aqd:O (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196991 5aqd:P (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196992 5aqd:P (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196993 5aqd:P (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196994 5aqd:P (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196995 5aqd:Q (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196996 5aqd:Q (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196997 5aqd:Q (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196998 5aqd:Q (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196999 5aqd:R (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197000 5aqd:R (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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