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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195801 5ad1:A (1.32) BS01 FE ? GO:0006826 ... Q0P8Q4 28383577
    195802 5ad1:A (1.32) BS02 8LC ? GO:0006826 ... Q0P8Q4 28383577 MOAD: Kd=58nM
    PDBbind: -logKd/Ki=7.24, Kd=58nM
    195803 5adh:A (2.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    195804 5adh:A (2.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    195805 5adh:A (2.9) BS03 APR 1.1.1.1 GO:0004022 ... P00327 3771574
    195806 5adu:L (1.1) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    195807 5adu:L (1.1) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    195808 5adu:L (1.1) BS03 MG 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    195809 5adu:M (1.1) BS01 FCO 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    195810 5adu:M (1.1) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    195811 5adu:M (1.1) BS03 MG 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    195812 5adu:S (1.1) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    195813 5adu:S (1.1) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    195814 5adu:S (1.1) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    195815 5adu:T (1.1) BS01 SF4 1.12.99.6 GO:0005515 ... P69739 26619250
    195816 5adu:T (1.1) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    195817 5adu:T (1.1) BS03 SF3 1.12.99.6 GO:0005515 ... P69739 26619250
    195818 5adv:A (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    195819 5adv:A (2.1) BS02 DBS ? GO:0006826 ... Q0P8Q4 27162326
    195820 5adv:A (2.1) BS03 DBS ? GO:0006826 ... Q0P8Q4 27162326
    195821 5adv:B (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    195822 5adv:B (2.1) BS02 EHS ? GO:0006826 ... Q0P8Q4 27162326 MOAD: Kd=10.1nM
    195823 5adv:B (2.1) BS03 DBS ? GO:0006826 ... Q0P8Q4 27162326
    195824 5adv:C (2.1) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    195825 5adv:C (2.1) BS02 DBS ? GO:0006826 ... Q0P8Q4 27162326
    195826 5adv:C (2.1) BS03 DBS ? GO:0006826 ... Q0P8Q4 27162326
    195827 5adw:A (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    195828 5adw:A (1.9) BS02 EHS ? GO:0006826 ... Q0P8Q4 27162326 MOAD: Kd=10.1nM
    195829 5adw:B (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    195830 5adw:B (1.9) BS02 EHS ? GO:0006826 ... Q0P8Q4 27162326 MOAD: Kd=10.1nM
    195831 5adw:C (1.9) BS01 FE ? GO:0006826 ... Q0P8Q4 27162326
    195832 5ady:0 (4.5) BS01 rna ? GO:0000027 ... P0A7N4 26458047
    195833 5ady:1 (4.5) BS01 rna ? GO:0000027 ... P0A7N9 26458047
    195834 5ady:2 (4.5) BS01 rna ? GO:0002181 ... P0A7P5 26458047
    195835 5ady:3 (4.5) BS01 rna ? GO:0002181 ... P0A7Q1 26458047
    195836 5ady:4 (4.5) BS01 rna ? GO:0002181 ... P0A7Q6 26458047
    195837 5ady:5 (4.5) BS01 rna ? GO:0000027 ... P0A7L0 26458047
    195838 5ady:6 (4.5) BS01 rna ? GO:0003924 ... P25519 26458047
    195839 5ady:6 (4.5) BS02 GNP ? GO:0003924 ... P25519 26458047
    195840 5ady:6 (4.5) BS03 MG ? GO:0003924 ... P25519 26458047
    195841 5ady:7 (4.5) BS01 rna ? GO:0002181 ... P0A7J3 26458047
    195842 5ady:C (4.5) BS01 rna ? GO:0000027 ... P60422 26458047
    195843 5ady:D (4.5) BS01 rna ? GO:0000027 ... P60438 26458047
    195844 5ady:E (4.5) BS01 rna ? GO:0001070 ... P60723 26458047
    195845 5ady:F (4.5) BS01 rna ? GO:0000027 ... P62399 26458047
    195846 5ady:F (4.5) BS02 rna ? GO:0000027 ... P62399 26458047
    195847 5ady:G (4.5) BS01 rna ? GO:0000027 ... P0AG55 26458047
    195848 5ady:H (4.5) BS01 rna ? GO:0002181 ... P0A7R1 26458047
    195849 5ady:I (4.5) BS01 rna ? GO:0000027 ... P0A7J7 26458047
    195850 5ady:J (4.5) BS01 rna ? GO:0002181 ... P0AA10 26458047
    195851 5ady:K (4.5) BS01 rna ? GO:0002181 ... P0ADY3 26458047
    195852 5ady:L (4.5) BS01 rna ? GO:0002181 ... P02413 26458047
    195853 5ady:M (4.5) BS01 rna ? GO:0000027 ... P0ADY7 26458047
    195854 5ady:M (4.5) BS02 rna ? GO:0000027 ... P0ADY7 26458047
    195855 5ady:N (4.5) BS01 rna ? GO:0000027 ... P0AG44 26458047
    195856 5ady:O (4.5) BS01 rna ? GO:0002181 ... P0C018 26458047
    195857 5ady:O (4.5) BS02 rna ? GO:0002181 ... P0C018 26458047
    195858 5ady:P (4.5) BS01 rna ? GO:0000027 ... P0A7K6 26458047
    195859 5ady:Q (4.5) BS01 rna ? GO:0000027 ... P0A7L3 26458047
    195860 5ady:R (4.5) BS01 rna ? GO:0002181 ... P0AG48 26458047
    195861 5ady:S (4.5) BS01 rna ? GO:0002181 ... P61175 26458047
    195862 5ady:T (4.5) BS01 rna ? GO:0000027 ... P0ADZ0 26458047
    195863 5ady:U (4.5) BS01 rna ? GO:0000027 ... P60624 26458047
    195864 5ady:V (4.5) BS01 rna ? GO:0000027 ... P68919 26458047
    195865 5ady:W (4.5) BS01 rna ? GO:0000027 ... P0A7L8 26458047
    195866 5ady:X (4.5) BS01 rna ? GO:0000027 ... P0A7M2 26458047
    195867 5ady:Y (4.5) BS01 rna ? GO:0000027 ... P0A7M6 26458047
    195868 5ady:Z (4.5) BS01 rna ? GO:0000027 ... P0AG51 26458047
    195869 5ady:Z (4.5) BS02 rna ? GO:0000027 ... P0AG51 26458047
    195870 5adz:A (2.2) BS01 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195871 5adz:A (2.2) BS02 KQS 2.5.1.26 GO:0003824 ... P97275 26322624
    195872 5adz:B (2.2) BS01 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195873 5adz:B (2.2) BS02 KQS 2.5.1.26 GO:0003824 ... P97275 26322624
    195874 5adz:C (2.2) BS01 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195875 5adz:C (2.2) BS02 KQS 2.5.1.26 GO:0003824 ... P97275 26322624
    195876 5adz:D (2.2) BS01 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195877 5adz:D (2.2) BS02 KQS 2.5.1.26 GO:0003824 ... P97275 26322624
    195878 5ae1:A (2.1) BS01 B2Z 2.5.1.26 GO:0003824 ... P97275 26322624
    195879 5ae1:A (2.1) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195880 5ae1:B (2.1) BS01 B2Z 2.5.1.26 GO:0003824 ... P97275 26322624
    195881 5ae1:B (2.1) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195882 5ae1:C (2.1) BS01 B2Z 2.5.1.26 GO:0003824 ... P97275 26322624
    195883 5ae1:C (2.1) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195884 5ae1:D (2.1) BS01 B2Z 2.5.1.26 GO:0003824 ... P97275 26322624
    195885 5ae1:D (2.1) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195886 5ae2:A (2.0) BS01 FYC 2.5.1.26 GO:0003824 ... P97275 26322624
    195887 5ae2:A (2.0) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195888 5ae2:B (2.0) BS01 FYC 2.5.1.26 GO:0003824 ... P97275 26322624
    195889 5ae2:B (2.0) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195890 5ae2:C (2.0) BS01 FYC 2.5.1.26 GO:0003824 ... P97275 26322624
    195891 5ae2:C (2.0) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195892 5ae2:D (2.0) BS01 FYC 2.5.1.26 GO:0003824 ... P97275 26322624
    195893 5ae2:D (2.0) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195894 5ae3:A (2.18) BS01 AWB 2.5.1.26 GO:0003824 ... P97275 26322624
    195895 5ae3:A (2.18) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195896 5ae3:B (2.18) BS01 AWB 2.5.1.26 GO:0003824 ... P97275 26322624
    195897 5ae3:B (2.18) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195898 5ae3:C (2.18) BS01 AWB 2.5.1.26 GO:0003824 ... P97275 26322624
    195899 5ae3:C (2.18) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195900 5ae3:D (2.18) BS01 AWB 2.5.1.26 GO:0003824 ... P97275 26322624
    195901 5ae3:D (2.18) BS02 FAD 2.5.1.26 GO:0003824 ... P97275 26322624
    195902 5ae6:A (2.1) BS01 MAN 3.2.1.37 GO:0004553 ... Q92458 N/A
    195903 5ae6:A (2.1) BS02 TXB 3.2.1.37 GO:0004553 ... Q92458 N/A
    195904 5ae6:A (2.1) BS03 XYP 3.2.1.37 GO:0004553 ... Q92458 N/A
    195905 5ae6:A (2.1) BS04 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    195906 5ae6:A (2.1) BS05 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    195907 5ae6:B (2.1) BS01 TXB 3.2.1.37 GO:0004553 ... Q92458 N/A
    195908 5ae6:B (2.1) BS02 XYP 3.2.1.37 GO:0004553 ... Q92458 N/A
    195909 5ae6:B (2.1) BS03 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    195910 5ae6:B (2.1) BS04 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    195911 5ae6:B (2.1) BS05 ZN 3.2.1.37 GO:0004553 ... Q92458 N/A
    195912 5aec:A (1.93) BS01 PIN 1.14.14.155 GO:0004497 ... D7UER1 26527149
    195913 5aec:B (1.93) BS01 PIN 1.14.14.155 GO:0004497 ... D7UER1 26527149
    195914 5ael:A (2.6) BS01 QAF 2.5.1.10 GO:0004161 ... Q86C09 26392508 PDBbind: -logKd/Ki=7.41, Kd=39.2nM
    195915 5ael:A (2.6) BS02 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    195916 5ael:A (2.6) BS03 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    195917 5ael:B (2.6) BS01 QAF 2.5.1.10 GO:0004161 ... Q86C09 26392508 PDBbind: -logKd/Ki=7.41, Kd=39.2nM
    195918 5ael:B (2.6) BS02 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    195919 5ael:B (2.6) BS03 MG 2.5.1.10 GO:0004161 ... Q86C09 26392508
    195920 5aen:A (1.864) BS01 DP8 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 25625859 MOAD: ic50=0.06uM
    PDBbind: -logKd/Ki=7.22, IC50=0.06uM
    BindingDB: Kd=270nM, IC50=60nM, Ki=160nM
    195921 5aen:A (1.864) BS02 ZN 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 25625859
    195922 5aeq:A (1.95) BS01 CA ? GO:0000287 ... P62168 25979333
    195923 5aeq:A (1.95) BS02 CA ? GO:0000287 ... P62168 25979333
    195924 5aeq:A (1.95) BS03 CA ? GO:0000287 ... P62168 25979333
    195925 5aeq:B (1.95) BS01 CA ? GO:0000287 ... P62168 25979333
    195926 5aeq:B (1.95) BS02 CA ? GO:0000287 ... P62168 25979333
    195927 5aeq:B (1.95) BS03 CA ? GO:0000287 ... P62168 25979333
    195928 5aer:A (2.19) BS01 peptide ? GO:0000287 ... P62168 25979333
    195929 5aer:A (2.19) BS02 peptide ? GO:0000287 ... P62168 25979333
    195930 5aer:A (2.19) BS03 CA ? GO:0000287 ... P62168 25979333
    195931 5aer:A (2.19) BS04 CA ? GO:0000287 ... P62168 25979333
    195932 5aer:A (2.19) BS05 CA ? GO:0000287 ... P62168 25979333
    195933 5aes:A (2.751) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 25783190
    195934 5aes:A (2.751) BS02 5B0 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 25783190 PDBbind: -logKd/Ki=2.89, IC50~1.3mM
    BindingDB: IC50=1300000nM
    195935 5aes:B (2.751) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 25783190
    195936 5aes:B (2.751) BS02 5B0 3.1.3.16
    3.1.3.74    		 GO:0000287 ... P60487 25783190 PDBbind: -logKd/Ki=2.89, IC50~1.3mM
    BindingDB: IC50=1300000nM
    195937 5afa:A (2.193) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    195938 5afa:A (2.193) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    195939 5afa:A (2.193) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    195940 5afa:A (2.193) BS04 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    195941 5afb:A (2.16) BS01 CA ? GO:0004930 ... Q9HAR2 25728924
    195942 5afg:A (1.9) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 26768531
    195943 5afg:A (1.9) BS02 P07 2.3.2.27 GO:0005634 ... Q00987 26768531
    195944 5afh:A (2.4) BS01 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195945 5afh:A (2.4) BS02 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195946 5afh:B (2.4) BS01 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195947 5afh:B (2.4) BS02 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195948 5afh:C (2.4) BS01 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195949 5afh:C (2.4) BS02 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195950 5afh:D (2.4) BS01 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195951 5afh:D (2.4) BS02 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195952 5afh:E (2.4) BS01 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195953 5afh:E (2.4) BS02 L0B ? GO:0004888 ... P36544
    P58154    		 25918415
    195954 5afi:0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 25707802
    195955 5afi:1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 25707802
    195956 5afi:2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 25707802
    195957 5afi:3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 25707802
    195958 5afi:4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 25707802
    195959 5afi:4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 25707802
    195960 5afi:5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 25707802
    195961 5afi:6 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 25707802
    195962 5afi:6 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 25707802
    195963 5afi:C (2.9) BS01 rna ? GO:0000027 ... P60422 25707802
    195964 5afi:C (2.9) BS02 rna ? GO:0000027 ... P60422 25707802
    195965 5afi:D (2.9) BS01 rna ? GO:0000027 ... P60438 25707802
    195966 5afi:E (2.9) BS01 rna ? GO:0001070 ... P60723 25707802
    195967 5afi:F (2.9) BS01 rna ? GO:0000027 ... P62399 25707802
    195968 5afi:F (2.9) BS02 rna ? GO:0000027 ... P62399 25707802
    195969 5afi:F (2.9) BS03 rna ? GO:0000027 ... P62399 25707802
    195970 5afi:G (2.9) BS01 rna ? GO:0000027 ... P0AG55 25707802
    195971 5afi:H (2.9) BS01 rna ? GO:0002181 ... P0A7R1 25707802
    195972 5afi:I (2.9) BS01 rna ? GO:0000027 ... P0A7J7 25707802
    195973 5afi:J (2.9) BS01 rna ? GO:0002181 ... P0AA10 25707802
    195974 5afi:K (2.9) BS01 rna ? GO:0002181 ... P0ADY3 25707802
    195975 5afi:K (2.9) BS02 rna ? GO:0002181 ... P0ADY3 25707802
    195976 5afi:L (2.9) BS01 rna ? GO:0002181 ... P02413 25707802
    195977 5afi:M (2.9) BS01 rna ? GO:0000027 ... P0ADY7 25707802
    195978 5afi:M (2.9) BS02 rna ? GO:0000027 ... P0ADY7 25707802
    195979 5afi:M (2.9) BS03 rna ? GO:0000027 ... P0ADY7 25707802
    195980 5afi:N (2.9) BS01 rna ? GO:0000027 ... P0AG44 25707802
    195981 5afi:O (2.9) BS01 rna ? GO:0002181 ... P0C018 25707802
    195982 5afi:O (2.9) BS02 rna ? GO:0002181 ... P0C018 25707802
    195983 5afi:P (2.9) BS01 rna ? GO:0000027 ... P0A7K6 25707802
    195984 5afi:P (2.9) BS02 rna ? GO:0000027 ... P0A7K6 25707802
    195985 5afi:Q (2.9) BS01 rna ? GO:0000027 ... P0A7L3 25707802
    195986 5afi:R (2.9) BS01 rna ? GO:0002181 ... P0AG48 25707802
    195987 5afi:S (2.9) BS01 rna ? GO:0002181 ... P61175 25707802
    195988 5afi:T (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 25707802
    195989 5afi:U (2.9) BS01 rna ? GO:0000027 ... P60624 25707802
    195990 5afi:V (2.9) BS01 rna ? GO:0000027 ... P68919 25707802
    195991 5afi:W (2.9) BS01 rna ? GO:0000027 ... P0A7L8 25707802
    195992 5afi:W (2.9) BS02 rna ? GO:0000027 ... P0A7L8 25707802
    195993 5afi:X (2.9) BS01 rna ? GO:0000027 ... P0A7M2 25707802
    195994 5afi:Y (2.9) BS01 rna ? GO:0000027 ... P0A7M6 25707802
    195995 5afi:Z (2.9) BS01 rna ? GO:0000027 ... P0AG51 25707802
    195996 5afi:Z (2.9) BS02 rna ? GO:0000027 ... P0AG51 25707802
    195997 5afi:b (2.9) BS01 rna ? GO:0000028 ... P0A7V0 25707802
    195998 5afi:c (2.9) BS01 rna ? GO:0000028 ... P0A7V3 25707802
    195999 5afi:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 25707802
    196000 5afi:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 25707802
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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