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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194201 4zpq:B (3.099) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194202 4zpq:B (3.099) BS07 CA ? GO:0005509 ... Q91XW9 26478182
    194203 4zpq:C (3.099) BS01 CA ? GO:0005509 ... Q91XW9 26478182
    194204 4zpq:C (3.099) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194205 4zpq:C (3.099) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194206 4zpq:C (3.099) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194207 4zpq:C (3.099) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194208 4zpq:C (3.099) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194209 4zpq:C (3.099) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    194210 4zpr:A (3.902) BS01 dna ? GO:0003700 ... P53762 26245371
    194211 4zpr:A (3.902) BS02 dna ? GO:0003700 ... P53762 26245371
    194212 4zps:A (2.9) BS01 MAN ? GO:0005509 ... Q91XY0 26478182
    194213 4zps:A (2.9) BS02 MAN ? GO:0005509 ... Q91XY0 26478182
    194214 4zps:A (2.9) BS03 CA ? GO:0005509 ... Q91XY0 26478182
    194215 4zps:A (2.9) BS04 CA ? GO:0005509 ... Q91XY0 26478182
    194216 4zps:A (2.9) BS05 CA ? GO:0005509 ... Q91XY0 26478182
    194217 4zps:A (2.9) BS06 CA ? GO:0005509 ... Q91XY0 26478182
    194218 4zps:A (2.9) BS07 CA ? GO:0005509 ... Q91XY0 26478182
    194219 4zps:A (2.9) BS08 CA ? GO:0005509 ... Q91XY0 26478182
    194220 4zps:A (2.9) BS09 CA ? GO:0005509 ... Q91XY0 26478182
    194221 4zq0:A (3.1) BS01 peptide ? GO:0000165 ... E2RU97 26551337
    194222 4zq0:B (3.1) BS01 peptide ? GO:0000165 ... E2RU97 26551337
    194223 4zq0:C (3.1) BS01 peptide ? GO:0000165 ... E2RU97 26551337
    194224 4zq0:D (3.1) BS01 peptide ? GO:0000165 ... E2RU97 26551337
    194225 4zqc:A (1.54) BS01 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    194226 4zqc:A (1.54) BS02 F6F 4.2.1.20 GO:0000162 ... P00929 26708480
    194227 4zqc:B (1.54) BS01 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    194228 4zqc:B (1.54) BS02 PLP 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    194229 4zqc:B (1.54) BS03 F6F 4.2.1.20 GO:0000162 ... P0A2K1 26708480
    194230 4zqd:B (2.87) BS01 0X3 ? GO:0003700 ... P97481 26245371
    194231 4zr0:A (3.8) BS01 ZN 1.14.18.6
    1.14.18.7    		 GO:0000038 ... Q03529 26515067
    194232 4zr0:A (3.8) BS02 ZN 1.14.18.6
    1.14.18.7    		 GO:0000038 ... Q03529 26515067
    194233 4zr0:B (3.8) BS01 ZN 1.14.18.6
    1.14.18.7    		 GO:0000038 ... Q03529 26515067
    194234 4zr0:B (3.8) BS02 ZN 1.14.18.6
    1.14.18.7    		 GO:0000038 ... Q03529 26515067
    194235 4zr1:A (2.6008) BS01 ZN 1.14.18.6
    1.14.18.7    		 GO:0005506 ... Q03529 26515067
    194236 4zr1:A (2.6008) BS02 ZN 1.14.18.6
    1.14.18.7    		 GO:0005506 ... Q03529 26515067
    194237 4zr1:B (2.6008) BS01 ZN 1.14.18.6
    1.14.18.7    		 GO:0005506 ... Q03529 26515067
    194238 4zr1:B (2.6008) BS02 ZN 1.14.18.6
    1.14.18.7    		 GO:0005506 ... Q03529 26515067
    194239 4zr5:A (2.8016) BS01 ZN 3.4.24.11 GO:0001822 ... P08049 31204686
    194240 4zr5:A (2.8016) BS02 RDF 3.4.24.11 GO:0001822 ... P08049 31204686 BindingDB: IC50=6nM
    194241 4zr5:B (2.8016) BS01 ZN 3.4.24.11 GO:0001822 ... P08049 31204686
    194242 4zr5:B (2.8016) BS02 RDF 3.4.24.11 GO:0001822 ... P08049 31204686 BindingDB: IC50=6nM
    194243 4zr6:A (2.6) BS01 4QW ? GO:0004888 ... P58154 N/A
    194244 4zr6:A (2.6) BS02 4QW ? GO:0004888 ... P58154 N/A
    194245 4zr6:B (2.6) BS01 4QW ? GO:0004888 ... P58154 N/A
    194246 4zr6:C (2.6) BS01 4QW ? GO:0004888 ... P58154 N/A
    194247 4zr6:C (2.6) BS02 4QW ? GO:0004888 ... P58154 N/A
    194248 4zr6:D (2.6) BS01 4QW ? GO:0004888 ... P58154 N/A
    194249 4zr6:D (2.6) BS02 4QW ? GO:0004888 ... P58154 N/A
    194250 4zr6:E (2.6) BS01 4QW ? GO:0004888 ... P58154 N/A
    194251 4zr6:E (2.6) BS02 4QW ? GO:0004888 ... P58154 N/A
    194252 4zra:A (1.83) BS01 4RF ? GO:0005576 ... P9WK45 26751071
    194253 4zrd:A (2.3) BS01 GOL 3.1.1.- GO:0005576 ... A8PUY1 26365206
    194254 4zri:A (2.7) BS01 peptide ? GO:0003779 ... P35240 26045165
    194255 4zri:B (2.7) BS01 peptide ? GO:0003779 ... P35240 26045165
    194256 4zrk:A (2.316) BS01 peptide ? GO:0003779 ... P46662 26045165
    194257 4zrk:B (2.316) BS01 peptide ? GO:0003779 ... P46662 26045165
    194258 4zrk:C (2.316) BS01 peptide ? GO:0003779 ... P46662 26045165
    194259 4zrk:C (2.316) BS02 peptide ? GO:0003779 ... P46662 26045165
    194260 4zrk:D (2.316) BS01 peptide ? GO:0003779 ... P46662 26045165
    194261 4zrp:A (2.1) BS01 CNC ? GO:0005515 ... P20062 27411955
    194262 4zrp:A (2.1) BS02 CA ? GO:0005515 ... P20062 27411955
    194263 4zrp:B (2.1) BS01 CNC ? GO:0005515 ... P20062 27411955
    194264 4zrq:A (2.6) BS01 CNC ? GO:0005515 ... P20062 27411955
    194265 4zrq:B (2.6) BS01 CNC ? GO:0005515 ... P20062 27411955
    194266 4zru:A (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194267 4zru:B (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194268 4zru:C (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194269 4zru:D (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194270 4zru:E (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194271 4zru:F (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194272 4zru:G (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194273 4zru:G (1.9) BS02 TI9 ? GO:0004888 ... P58154 N/A
    194274 4zru:H (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194275 4zru:H (1.9) BS02 TI9 ? GO:0004888 ... P58154 N/A
    194276 4zru:I (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194277 4zru:I (1.9) BS02 TI9 ? GO:0004888 ... P58154 N/A
    194278 4zru:J (1.9) BS01 TI9 ? GO:0004888 ... P58154 N/A
    194279 4zs2:A (2.16) BS01 AKG 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 26457839
    194280 4zs2:A (2.16) BS02 FLU 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 26457839 MOAD: ic50=3.23uM
    PDBbind: -logKd/Ki=5.49, IC50=3.23uM
    194281 4zs2:A (2.16) BS03 MN 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 26457839
    194282 4zs3:A (2.45) BS01 AKG 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 26457839
    194283 4zs3:A (2.45) BS02 A4F 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 26457839 MOAD: ic50=6.55uM
    PDBbind: -logKd/Ki=5.18, IC50=6.55uM
    194284 4zs3:A (2.45) BS03 MN 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 26457839
    194285 4zs9:A (1.37) BS01 FRU ? GO:0015768 ... A0A1A9TA69 27502277
    194286 4zs9:A (1.37) BS02 GLC ? GO:0015768 ... A0A1A9TA69 27502277
    194287 4zs9:A (1.37) BS03 GLA ? GO:0015768 ... A0A1A9TA69 27502277
    194288 4zs9:B (1.37) BS01 GLC ? GO:0015768 ... A0A1A9TA69 27502277
    194289 4zs9:B (1.37) BS02 GLA ? GO:0015768 ... A0A1A9TA69 27502277
    194290 4zsh:A (1.8) BS01 peptide ? GO:0003677 ... P19793 26030625
    194291 4zsh:A (1.8) BS02 4XW ? GO:0003677 ... P19793 26030625 MOAD: Kd=90nM
    PDBbind: -logKd/Ki=7.05, Kd=90nM
    194292 4zsm:A (1.96) BS01 4RW 3.4.23.46 GO:0004190 ... P56817 26001341 PDBbind: -logKd/Ki=2.40, IC50~4mM
    BindingDB: IC50=4000000nM
    194293 4zsm:B (1.96) BS01 4RW 3.4.23.46 GO:0004190 ... P56817 26001341 BindingDB: IC50=4000000nM
    194294 4zsn:QB (3.6) BS01 rna ? GO:0003735 ... P80371 27378776
    194295 4zsn:QC (3.6) BS01 rna ? GO:0003676 ... P80372 27378776
    194296 4zsn:QD (3.6) BS01 rna ? GO:0003723 ... P80373 27378776
    194297 4zsn:QD (3.6) BS02 MG ? GO:0003723 ... P80373 27378776
    194298 4zsn:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 27378776
    194299 4zsn:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 27378776
    194300 4zsn:QG (3.6) BS01 rna ? GO:0000028 ... P17291 27378776
    194301 4zsn:QH (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194302 4zsn:QI (3.6) BS01 rna ? GO:0000049 ... P80374 27378776
    194303 4zsn:QI (3.6) BS02 rna ? GO:0000049 ... P80374 27378776
    194304 4zsn:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 27378776
    194305 4zsn:QK (3.6) BS01 rna ? GO:0003735 ... P80376 27378776
    194306 4zsn:QK (3.6) BS02 rna ? GO:0003735 ... P80376 27378776
    194307 4zsn:QK (3.6) BS03 MG ? GO:0003735 ... P80376 27378776
    194308 4zsn:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 27378776
    194309 4zsn:QM (3.6) BS01 rna ? GO:0000049 ... P80377 27378776
    194310 4zsn:QN (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194311 4zsn:QN (3.6) BS02 ZN N/A GO:0003735 ... N/A 27378776
    194312 4zsn:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 27378776
    194313 4zsn:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 27378776
    194314 4zsn:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 27378776
    194315 4zsn:QQ (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194316 4zsn:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 27378776
    194317 4zsn:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 27378776
    194318 4zsn:QT (3.6) BS01 rna ? GO:0003723 ... P80380 27378776
    194319 4zsn:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 27378776
    194320 4zsn:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 27378776
    194321 4zsn:R0 (3.6) BS03 rna ? GO:0003735 ... P60493 27378776
    194322 4zsn:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 27378776
    194323 4zsn:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 27378776
    194324 4zsn:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 27378776
    194325 4zsn:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 27378776
    194326 4zsn:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 27378776
    194327 4zsn:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 27378776
    194328 4zsn:R5 (3.6) BS02 MG ? GO:0003735 ... P80339 27378776
    194329 4zsn:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 27378776
    194330 4zsn:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 27378776
    194331 4zsn:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 27378776
    194332 4zsn:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 27378776
    194333 4zsn:RD (3.6) BS01 rna ? GO:0002181 ... P60405 27378776
    194334 4zsn:RD (3.6) BS02 rna ? GO:0002181 ... P60405 27378776
    194335 4zsn:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 27378776
    194336 4zsn:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 27378776
    194337 4zsn:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 27378776
    194338 4zsn:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 27378776
    194339 4zsn:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 27378776
    194340 4zsn:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 27378776
    194341 4zsn:RH (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194342 4zsn:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 27378776
    194343 4zsn:RN (3.6) BS01 rna ? GO:0003729 ... P60488 27378776
    194344 4zsn:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 27378776
    194345 4zsn:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 27378776
    194346 4zsn:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 27378776
    194347 4zsn:RP (3.6) BS02 MG ? GO:0003735 ... Q5SHQ7 27378776
    194348 4zsn:RP (3.6) BS03 MG ? GO:0003735 ... Q5SHQ7 27378776
    194349 4zsn:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 27378776
    194350 4zsn:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 27378776
    194351 4zsn:RQ (3.6) BS03 MG ? GO:0000049 ... P60489 27378776
    194352 4zsn:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 27378776
    194353 4zsn:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 27378776
    194354 4zsn:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 27378776
    194355 4zsn:RT (3.6) BS01 rna ? GO:0003735 ... P60490 27378776
    194356 4zsn:RT (3.6) BS02 rna ? GO:0003735 ... P60490 27378776
    194357 4zsn:RU (3.6) BS01 rna ? GO:0000027 ... P60491 27378776
    194358 4zsn:RV (3.6) BS01 rna ? GO:0003723 ... P60492 27378776
    194359 4zsn:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 27378776
    194360 4zsn:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 27378776
    194361 4zsn:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 27378776
    194362 4zsn:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 27378776
    194363 4zsn:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 27378776
    194364 4zsn:XB (3.6) BS01 rna ? GO:0003735 ... P80371 27378776
    194365 4zsn:XC (3.6) BS01 rna ? GO:0003676 ... P80372 27378776
    194366 4zsn:XD (3.6) BS01 rna ? GO:0003723 ... P80373 27378776
    194367 4zsn:XD (3.6) BS02 MG ? GO:0003723 ... P80373 27378776
    194368 4zsn:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 27378776
    194369 4zsn:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 27378776
    194370 4zsn:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 27378776
    194371 4zsn:XG (3.6) BS01 rna ? GO:0000028 ... P17291 27378776
    194372 4zsn:XH (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194373 4zsn:XI (3.6) BS01 rna ? GO:0000049 ... P80374 27378776
    194374 4zsn:XI (3.6) BS02 rna ? GO:0000049 ... P80374 27378776
    194375 4zsn:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 27378776
    194376 4zsn:XK (3.6) BS01 rna ? GO:0003735 ... P80376 27378776
    194377 4zsn:XK (3.6) BS02 MG ? GO:0003735 ... P80376 27378776
    194378 4zsn:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 27378776
    194379 4zsn:XM (3.6) BS01 rna ? GO:0000049 ... P80377 27378776
    194380 4zsn:XM (3.6) BS02 rna ? GO:0000049 ... P80377 27378776
    194381 4zsn:XM (3.6) BS03 MG ? GO:0000049 ... P80377 27378776
    194382 4zsn:XN (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194383 4zsn:XN (3.6) BS02 ZN N/A GO:0003735 ... N/A 27378776
    194384 4zsn:XN (3.6) BS03 MG N/A GO:0003735 ... N/A 27378776
    194385 4zsn:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 27378776
    194386 4zsn:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 27378776
    194387 4zsn:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 27378776
    194388 4zsn:XQ (3.6) BS01 rna N/A GO:0003735 ... N/A 27378776
    194389 4zsn:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 27378776
    194390 4zsn:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 27378776
    194391 4zsn:XT (3.6) BS01 rna ? GO:0003723 ... P80380 27378776
    194392 4zsn:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 27378776
    194393 4zsn:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 27378776
    194394 4zsn:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 27378776
    194395 4zsn:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 27378776
    194396 4zsn:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 27378776
    194397 4zsn:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 27378776
    194398 4zsn:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 27378776
    194399 4zsn:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 27378776
    194400 4zsn:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 27378776
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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