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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194001 4zmn:A (2.6) BS02 CA ? GO:0005509 ... P22223 27545624
    194002 4zmn:A (2.6) BS03 CA ? GO:0005509 ... P22223 27545624
    194003 4zmo:A (2.48) BS01 CA ? GO:0005509 ... P22223 27545624
    194004 4zmo:A (2.48) BS02 CA ? GO:0005509 ... P22223 27545624
    194005 4zmp:A (2.15) BS01 CA ? GO:0005509 ... P22223 27545624
    194006 4zmp:A (2.15) BS02 CA ? GO:0005509 ... P22223 27545624
    194007 4zmp:A (2.15) BS03 CA ? GO:0005509 ... P22223 27545624
    194008 4zmq:A (2.2) BS01 CA ? GO:0005509 ... P22223 27545624
    194009 4zmq:A (2.2) BS02 CA ? GO:0005509 ... P22223 27545624
    194010 4zmq:A (2.2) BS03 CA ? GO:0005509 ... P22223 27545624
    194011 4zmq:B (2.2) BS01 CA ? GO:0005509 ... P22223 27545624
    194012 4zmq:B (2.2) BS02 CA ? GO:0005509 ... P22223 27545624
    194013 4zmq:B (2.2) BS03 CA ? GO:0005509 ... P22223 27545624
    194014 4zmr:A (2.001) BS01 MG ? GO:0000156 ... Q8DNC2 27038544
    194015 4zmr:A (2.001) BS02 BEF ? GO:0000156 ... Q8DNC2 27038544
    194016 4zmr:B (2.001) BS01 MG ? GO:0000156 ... Q8DNC2 27038544
    194017 4zmr:B (2.001) BS02 BEF ? GO:0000156 ... Q8DNC2 27038544
    194018 4zms:A (1.9) BS01 MG ? GO:0000156 ... Q8DNC2 27038544
    194019 4zms:A (1.9) BS02 BEF ? GO:0000156 ... Q8DNC2 27038544
    194020 4zms:A (1.9) BS03 4QT ? GO:0000156 ... Q8DNC2 27038544
    194021 4zms:B (1.9) BS01 MG ? GO:0000156 ... Q8DNC2 27038544
    194022 4zms:B (1.9) BS02 BEF ? GO:0000156 ... Q8DNC2 27038544
    194023 4zmt:A (2.7) BS01 CA ? GO:0005509 ... P22223 27545624
    194024 4zmt:A (2.7) BS02 CA ? GO:0005509 ... P22223 27545624
    194025 4zmt:A (2.7) BS03 CA ? GO:0005509 ... P22223 27545624
    194026 4zmt:B (2.7) BS01 CA ? GO:0005509 ... P22223 27545624
    194027 4zmt:B (2.7) BS02 CA ? GO:0005509 ... P22223 27545624
    194028 4zmt:B (2.7) BS03 CA ? GO:0005509 ... P22223 27545624
    194029 4zmt:C (2.7) BS01 CA ? GO:0005509 ... P22223 27545624
    194030 4zmt:C (2.7) BS02 CA ? GO:0005509 ... P22223 27545624
    194031 4zmt:C (2.7) BS03 CA ? GO:0005509 ... P22223 27545624
    194032 4zmt:D (2.7) BS01 CA ? GO:0005509 ... P22223 27545624
    194033 4zmt:D (2.7) BS02 CA ? GO:0005509 ... P22223 27545624
    194034 4zmt:D (2.7) BS03 CA ? GO:0005509 ... P22223 27545624
    194035 4zmt:E (2.7) BS01 CA ? GO:0005509 ... P22223 27545624
    194036 4zmt:E (2.7) BS02 CA ? GO:0005509 ... P22223 27545624
    194037 4zmt:E (2.7) BS03 CA ? GO:0005509 ... P22223 27545624
    194038 4zmt:F (2.7) BS01 CA ? GO:0005509 ... P22223 27545624
    194039 4zmt:F (2.7) BS02 CA ? GO:0005509 ... P22223 27545624
    194040 4zmt:F (2.7) BS03 CA ? GO:0005509 ... P22223 27545624
    194041 4zmv:A (2.4) BS01 CA ? GO:0005509 ... P22223 27545624
    194042 4zmv:A (2.4) BS02 CA ? GO:0005509 ... P22223 27545624
    194043 4zmv:B (2.4) BS01 CA ? GO:0005509 ... P22223 27545624
    194044 4zmv:B (2.4) BS02 CA ? GO:0005509 ... P22223 27545624
    194045 4zmw:A (2.3) BS01 CA ? GO:0005509 ... P22223 27545624
    194046 4zmw:A (2.3) BS02 CA ? GO:0005509 ... P22223 27545624
    194047 4zmw:B (2.3) BS01 CA ? GO:0005509 ... P22223 27545624
    194048 4zmw:B (2.3) BS02 CA ? GO:0005509 ... P22223 27545624
    194049 4zmx:A (3.1) BS01 CA ? GO:0005509 ... P22223 27545624
    194050 4zmx:A (3.1) BS02 CA ? GO:0005509 ... P22223 27545624
    194051 4zmx:A (3.1) BS03 CA ? GO:0005509 ... P22223 27545624
    194052 4zmx:B (3.1) BS01 CA ? GO:0005509 ... P22223 27545624
    194053 4zmx:B (3.1) BS02 CA ? GO:0005509 ... P22223 27545624
    194054 4zmx:B (3.1) BS03 CA ? GO:0005509 ... P22223 27545624
    194055 4zmy:A (1.5) BS01 CA ? GO:0005509 ... P22223 27545624
    194056 4zmy:A (1.5) BS02 CA ? GO:0005509 ... P22223 27545624
    194057 4zmy:A (1.5) BS03 CA ? GO:0005509 ... P22223 27545624
    194058 4zmz:A (2.05) BS01 CA ? GO:0005509 ... P22223 27545624
    194059 4zmz:A (2.05) BS02 CA ? GO:0005509 ... P22223 27545624
    194060 4zmz:A (2.05) BS03 CA ? GO:0005509 ... P22223 27545624
    194061 4zmz:A (2.05) BS04 CA ? GO:0005509 ... P22223 27545624
    194062 4zn3:A (2.3) BS01 FE ? GO:0003735 ... Q57818 26433031
    194063 4znd:A (2.55) BS01 S3P 2.5.1.19 GO:0003824 ... Q83E11 N/A
    194064 4zno:A (1.86) BS01 GLC ? GO:0005537 ... Q5CZR5 26711430
    194065 4zno:B (1.86) BS01 GLC ? GO:0005537 ... Q5CZR5 26711430
    194066 4zno:B (1.86) BS02 FRU ? GO:0005537 ... Q5CZR5 26711430
    194067 4znq:A (1.9) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    194068 4znq:B (1.9) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    194069 4znr:A (2.1) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    194070 4znr:B (2.1) BS01 MAN ? GO:0005537 ... Q5CZR5 26711430
    194071 4zof:A (1.8) BS01 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194072 4zof:A (1.8) BS02 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194073 4zof:A (1.8) BS03 PRP 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194074 4zof:A (1.8) BS04 59L 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194075 4zof:B (1.8) BS01 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194076 4zof:B (1.8) BS02 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194077 4zof:B (1.8) BS03 PRP 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194078 4zof:B (1.8) BS04 59L 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194079 4zoj:A (1.96) BS01 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194080 4zoj:A (1.96) BS02 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194081 4zoj:A (1.96) BS03 PRP 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194082 4zoj:A (1.96) BS04 61L 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194083 4zoj:B (1.96) BS01 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194084 4zoj:B (1.96) BS02 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194085 4zoj:B (1.96) BS03 PRP 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194086 4zoj:B (1.96) BS04 61L 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194087 4zok:A (2.34) BS01 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194088 4zok:A (2.34) BS02 PRP 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194089 4zok:A (2.34) BS03 62L 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194090 4zok:B (2.34) BS01 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194091 4zok:B (2.34) BS02 MG 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194092 4zok:B (2.34) BS03 PRP 2.4.2.18 GO:0000162 ... A5U4M0 N/A
    194093 4zol:A (2.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26660762
    194094 4zol:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 26660762
    194095 4zol:B (2.5) BS01 GDP ? GO:0000226 ... P02554 26660762
    194096 4zol:B (2.5) BS02 55Q ? GO:0000226 ... P02554 26660762
    194097 4zol:C (2.5) BS01 55Q 3.6.5.- GO:0000226 ... Q2XVP4 26660762
    194098 4zol:C (2.5) BS02 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26660762
    194099 4zol:C (2.5) BS03 CA 3.6.5.- GO:0000226 ... Q2XVP4 26660762
    194100 4zol:D (2.5) BS01 GDP ? GO:0000226 ... P02554 26660762
    194101 4zol:D (2.5) BS02 55Q ? GO:0000226 ... P02554 26660762
    194102 4zom:A (2.27) BS01 4Q3 ? GO:0003677 ... P51449 26048789 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: EC50=10.0nM, IC50=4.9nM
    194103 4zom:B (2.27) BS01 4Q3 ? GO:0003677 ... P51449 26048789 MOAD: ic50=3nM
    BindingDB: EC50=10.0nM, IC50=4.9nM
    194104 4zom:C (2.27) BS01 4Q3 ? GO:0003677 ... P51449 26048789 MOAD: ic50=3nM
    BindingDB: EC50=10.0nM, IC50=4.9nM
    194105 4zom:D (2.27) BS01 4Q3 ? GO:0003677 ... P51449 26048789 MOAD: ic50=3nM
    BindingDB: EC50=10.0nM, IC50=4.9nM
    194106 4zop:A (2.62) BS01 4Q2 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 N/A BindingDB: IC50=6.0nM
    194107 4zow:A (2.45) BS01 CLM ? GO:0005886 ... P0AEY8 26238402 MOAD: Kd=75uM
    PDBbind: -logKd/Ki=4.12, Kd=75uM
    194108 4zp0:A (2.0) BS01 DXC ? GO:0005886 ... P0AEY8 26238402
    194109 4zp1:A (2.205) BS01 MG 4.1.1.1 GO:0000287 ... P06672 26488818
    194110 4zp1:A (2.205) BS02 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194111 4zp1:A (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194112 4zp1:B (2.205) BS01 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194113 4zp1:B (2.205) BS02 MG 4.1.1.1 GO:0000287 ... P06672 26488818
    194114 4zp1:B (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194115 4zp1:C (2.205) BS01 MG 4.1.1.1 GO:0000287 ... P06672 26488818
    194116 4zp1:C (2.205) BS02 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194117 4zp1:C (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194118 4zp1:D (2.205) BS01 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194119 4zp1:D (2.205) BS02 MG 4.1.1.1 GO:0000287 ... P06672 26488818
    194120 4zp1:D (2.205) BS03 TPP 4.1.1.1 GO:0000287 ... P06672 26488818
    194121 4zpe:A (1.7) BS01 4QA 3.4.23.46 GO:0004190 ... P56817 26195137 MOAD: ic50=0.45uM
    PDBbind: -logKd/Ki=6.35, IC50=0.45uM
    194122 4zpf:A (1.8) BS01 4QD 3.4.23.46 GO:0004190 ... P56817 26195137 MOAD: ic50=0.18uM
    PDBbind: -logKd/Ki=6.74, IC50=0.18uM
    194123 4zpg:A (2.0) BS01 4QF 3.4.23.46 GO:0004190 ... P56817 26195137 MOAD: ic50=0.055uM
    PDBbind: -logKd/Ki=7.26, IC50=0.055uM
    194124 4zph:A (2.8) BS01 PRL ? GO:0003700 ... P53762 26245371 PDBbind: -logKd/Ki=7.51, Kd=31nM
    194125 4zpk:A (3.6) BS01 dna ? GO:0003700 ... P53762 26245371 PDBbind: Kd=45nM
    194126 4zpk:A (3.6) BS02 dna ? GO:0003700 ... P53762 26245371 PDBbind: Kd=45nM
    194127 4zpk:B (3.6) BS01 dna ? GO:0003700 ... P97481 26245371 PDBbind: Kd=45nM
    194128 4zpk:B (3.6) BS02 dna ? GO:0003700 ... P97481 26245371 PDBbind: Kd=45nM
    194129 4zpl:A (3.3) BS01 CA ? GO:0005509 ... Q91Y08 26478182
    194130 4zpl:A (3.3) BS02 CA ? GO:0005509 ... Q91Y08 26478182
    194131 4zpl:A (3.3) BS03 CA ? GO:0005509 ... Q91Y08 26478182
    194132 4zpl:A (3.3) BS04 CA ? GO:0005509 ... Q91Y08 26478182
    194133 4zpl:A (3.3) BS05 CA ? GO:0005509 ... Q91Y08 26478182
    194134 4zpl:A (3.3) BS06 CA ? GO:0005509 ... Q91Y08 26478182
    194135 4zpm:A (2.4) BS01 MAN ? GO:0005509 ... Q91Y09 26478182
    194136 4zpm:A (2.4) BS02 MAN ? GO:0005509 ... Q91Y09 26478182
    194137 4zpm:A (2.4) BS03 CA ? GO:0005509 ... Q91Y09 26478182
    194138 4zpm:A (2.4) BS04 CA ? GO:0005509 ... Q91Y09 26478182
    194139 4zpm:A (2.4) BS05 CA ? GO:0005509 ... Q91Y09 26478182
    194140 4zpm:A (2.4) BS06 CA ? GO:0005509 ... Q91Y09 26478182
    194141 4zpm:A (2.4) BS07 CA ? GO:0005509 ... Q91Y09 26478182
    194142 4zpm:A (2.4) BS08 CA ? GO:0005509 ... Q91Y09 26478182
    194143 4zpm:B (2.4) BS01 MAN ? GO:0005509 ... Q91Y09 26478182
    194144 4zpm:B (2.4) BS02 MAN ? GO:0005509 ... Q91Y09 26478182
    194145 4zpm:B (2.4) BS03 CA ? GO:0005509 ... Q91Y09 26478182
    194146 4zpm:B (2.4) BS04 CA ? GO:0005509 ... Q91Y09 26478182
    194147 4zpm:B (2.4) BS05 CA ? GO:0005509 ... Q91Y09 26478182
    194148 4zpm:B (2.4) BS06 CA ? GO:0005509 ... Q91Y09 26478182
    194149 4zpm:B (2.4) BS07 CA ? GO:0005509 ... Q91Y09 26478182
    194150 4zpm:B (2.4) BS08 CA ? GO:0005509 ... Q91Y09 26478182
    194151 4zpn:A (3.3) BS01 FUC ? GO:0005509 ... Q91XW9 26478182
    194152 4zpn:A (3.3) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194153 4zpn:A (3.3) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194154 4zpn:A (3.3) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194155 4zpn:A (3.3) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194156 4zpn:A (3.3) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194157 4zpn:A (3.3) BS07 CA ? GO:0005509 ... Q91XW9 26478182
    194158 4zpn:A (3.3) BS08 CA ? GO:0005509 ... Q91XW9 26478182
    194159 4zpn:A (3.3) BS09 MAN ? GO:0005509 ... Q91XW9 26478182
    194160 4zpn:A (3.3) BS10 MAN ? GO:0005509 ... Q91XW9 26478182
    194161 4zpn:B (3.3) BS01 CA ? GO:0005509 ... Q91XW9 26478182
    194162 4zpn:B (3.3) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194163 4zpn:B (3.3) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194164 4zpn:B (3.3) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194165 4zpn:B (3.3) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194166 4zpn:B (3.3) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194167 4zpn:B (3.3) BS07 CA ? GO:0005509 ... Q91XW9 26478182
    194168 4zpn:B (3.3) BS08 CA ? GO:0005509 ... Q91XW9 26478182
    194169 4zpo:A (2.9) BS01 CA ? GO:0005509 ... Q91XW9 26478182
    194170 4zpo:A (2.9) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194171 4zpo:A (2.9) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194172 4zpo:A (2.9) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194173 4zpo:A (2.9) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194174 4zpo:A (2.9) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194175 4zpo:A (2.9) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    194176 4zpp:A (3.002) BS01 CA ? GO:0005509 ... Q91XW9 26478182
    194177 4zpp:A (3.002) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194178 4zpp:A (3.002) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194179 4zpp:A (3.002) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194180 4zpp:A (3.002) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194181 4zpp:A (3.002) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194182 4zpp:A (3.002) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    194183 4zpp:B (3.002) BS01 CA ? GO:0005509 ... Q91XW9 26478182
    194184 4zpp:B (3.002) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194185 4zpp:B (3.002) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194186 4zpp:B (3.002) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194187 4zpp:B (3.002) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194188 4zpp:B (3.002) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194189 4zpq:A (3.099) BS01 CA ? GO:0005509 ... Q91XW9 26478182
    194190 4zpq:A (3.099) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194191 4zpq:A (3.099) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194192 4zpq:A (3.099) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194193 4zpq:A (3.099) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    194194 4zpq:A (3.099) BS06 CA ? GO:0005509 ... Q91XW9 26478182
    194195 4zpq:A (3.099) BS07 MAN ? GO:0005509 ... Q91XW9 26478182
    194196 4zpq:B (3.099) BS01 MAN ? GO:0005509 ... Q91XW9 26478182
    194197 4zpq:B (3.099) BS02 CA ? GO:0005509 ... Q91XW9 26478182
    194198 4zpq:B (3.099) BS03 CA ? GO:0005509 ... Q91XW9 26478182
    194199 4zpq:B (3.099) BS04 CA ? GO:0005509 ... Q91XW9 26478182
    194200 4zpq:B (3.099) BS05 CA ? GO:0005509 ... Q91XW9 26478182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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