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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    193401 4zeb:A (1.89) BS03 LAO ? GO:0015833 ... Q52012 26244338
    193402 4zeb:B (1.89) BS01 GLC ? GO:0015833 ... Q52012 26244338
    193403 4zeb:B (1.89) BS02 FRU ? GO:0015833 ... Q52012 26244338
    193404 4zeb:B (1.89) BS03 LAO ? GO:0015833 ... Q52012 26244338
    193405 4zec:A (2.15) BS01 C84 ? GO:0015833 ... Q52012 26244338 PDBbind: -logKd/Ki=5.82, Kd=1.5uM
    193406 4zed:A (1.75) BS01 AGW ? GO:0015833 ... Q52012 26244338 PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    193407 4zee:A (1.95) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 25974859
    193408 4zef:A (1.4) BS01 GLN ? GO:0015276 ... Q837S0 N/A
    193409 4zei:A (2.3) BS01 LAO ? GO:0015833 ... Q52012 26244338 MOAD: Kd=1.33uM
    PDBbind: -logKd/Ki=5.88, Kd=1.33uM
    193410 4zek:A (2.09) BS01 LAH ? GO:0015833 ... Q52012 26244338 PDBbind: -logKd/Ki=5.66, Kd=2.2uM
    193411 4zel:A (2.9) BS01 CU 1.14.17.1 GO:0001974 ... P09172 27152332
    193412 4zen:A (1.93) BS01 BGP 3.2.1.85 GO:0004553 ... W8QF82 N/A
    193413 4zen:B (1.93) BS01 BGP 3.2.1.85 GO:0004553 ... W8QF82 N/A
    193414 4zep:A (2.21) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    193415 4zep:B (2.21) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    193416 4zer:10 (3.1) BS01 rna ? GO:0003735 ... P60493 25984971
    193417 4zer:10 (3.1) BS02 rna ? GO:0003735 ... P60493 25984971
    193418 4zer:10 (3.1) BS03 rna ? GO:0003735 ... P60493 25984971
    193419 4zer:10 (3.1) BS04 MG ? GO:0003735 ... P60493 25984971
    193420 4zer:10 (3.1) BS05 MG ? GO:0003735 ... P60493 25984971
    193421 4zer:11 (3.1) BS01 rna ? GO:0003735 ... P60494 25984971
    193422 4zer:12 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 25984971
    193423 4zer:13 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 25984971
    193424 4zer:13 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 25984971
    193425 4zer:13 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 25984971
    193426 4zer:13 (3.1) BS04 MG ? GO:0003735 ... Q5SHQ6 25984971
    193427 4zer:14 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 25984971
    193428 4zer:14 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 25984971
    193429 4zer:15 (3.1) BS01 rna ? GO:0003735 ... P80339 25984971
    193430 4zer:15 (3.1) BS02 MG ? GO:0003735 ... P80339 25984971
    193431 4zer:15 (3.1) BS03 MG ? GO:0003735 ... P80339 25984971
    193432 4zer:15 (3.1) BS04 MG ? GO:0003735 ... P80339 25984971
    193433 4zer:15 (3.1) BS05 MG ? GO:0003735 ... P80339 25984971
    193434 4zer:15 (3.1) BS06 ZN ? GO:0003735 ... P80339 25984971
    193435 4zer:16 (3.1) BS01 rna ? GO:0000049 ... P35871 25984971
    193436 4zer:16 (3.1) BS02 ZN ? GO:0000049 ... P35871 25984971
    193437 4zer:17 (3.1) BS01 rna ? GO:0003735 ... P80340 25984971
    193438 4zer:17 (3.1) BS02 MG ? GO:0003735 ... P80340 25984971
    193439 4zer:17 (3.1) BS03 MG ? GO:0003735 ... P80340 25984971
    193440 4zer:18 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 25984971
    193441 4zer:18 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 25984971
    193442 4zer:19 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 25984971
    193443 4zer:19 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 25984971
    193444 4zer:1D (3.1) BS01 rna ? GO:0002181 ... P60405 25984971
    193445 4zer:1D (3.1) BS02 MG ? GO:0002181 ... P60405 25984971
    193446 4zer:1D (3.1) BS03 MG ? GO:0002181 ... P60405 25984971
    193447 4zer:1D (3.1) BS04 MG ? GO:0002181 ... P60405 25984971
    193448 4zer:1D (3.1) BS05 MG ? GO:0002181 ... P60405 25984971
    193449 4zer:1D (3.1) BS06 MG ? GO:0002181 ... P60405 25984971
    193450 4zer:1D (3.1) BS07 MG ? GO:0002181 ... P60405 25984971
    193451 4zer:1D (3.1) BS08 MG ? GO:0002181 ... P60405 25984971
    193452 4zer:1D (3.1) BS09 MG ? GO:0002181 ... P60405 25984971
    193453 4zer:1D (3.1) BS10 MG ? GO:0002181 ... P60405 25984971
    193454 4zer:1E (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 25984971
    193455 4zer:1E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 25984971
    193456 4zer:1E (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 25984971
    193457 4zer:1F (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 25984971
    193458 4zer:1F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 25984971
    193459 4zer:1F (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 25984971
    193460 4zer:1F (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 25984971
    193461 4zer:1F (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 25984971
    193462 4zer:1F (3.1) BS06 MG ? GO:0003735 ... Q5SHN9 25984971
    193463 4zer:1F (3.1) BS07 MG ? GO:0003735 ... Q5SHN9 25984971
    193464 4zer:1F (3.1) BS08 MG ? GO:0003735 ... Q5SHN9 25984971
    193465 4zer:1F (3.1) BS09 MG ? GO:0003735 ... Q5SHN9 25984971
    193466 4zer:1F (3.1) BS10 MG ? GO:0003735 ... Q5SHN9 25984971
    193467 4zer:1F (3.1) BS11 MG ? GO:0003735 ... Q5SHN9 25984971
    193468 4zer:1G (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 25984971
    193469 4zer:1G (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 25984971
    193470 4zer:1G (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 25984971
    193471 4zer:1G (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 25984971
    193472 4zer:1G (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 25984971
    193473 4zer:1H (3.1) BS01 rna ? GO:0002181 ... P0DOY8 25984971
    193474 4zer:1I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 25984971
    193475 4zer:1N (3.1) BS01 rna ? GO:0003729 ... P60488 25984971
    193476 4zer:1N (3.1) BS02 MG ? GO:0003729 ... P60488 25984971
    193477 4zer:1O (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 25984971
    193478 4zer:1O (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 25984971
    193479 4zer:1P (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 25984971
    193480 4zer:1P (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 25984971
    193481 4zer:1Q (3.1) BS01 rna ? GO:0000049 ... P60489 25984971
    193482 4zer:1Q (3.1) BS02 rna ? GO:0000049 ... P60489 25984971
    193483 4zer:1Q (3.1) BS03 MG ? GO:0000049 ... P60489 25984971
    193484 4zer:1Q (3.1) BS04 MG ? GO:0000049 ... P60489 25984971
    193485 4zer:1Q (3.1) BS05 MG ? GO:0000049 ... P60489 25984971
    193486 4zer:1R (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 25984971
    193487 4zer:1R (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 25984971
    193488 4zer:1S (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 25984971
    193489 4zer:1S (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 25984971
    193490 4zer:1T (3.1) BS01 rna ? GO:0003735 ... P60490 25984971
    193491 4zer:1T (3.1) BS02 rna ? GO:0003735 ... P60490 25984971
    193492 4zer:1U (3.1) BS01 rna ? GO:0000027 ... P60491 25984971
    193493 4zer:1U (3.1) BS02 MG ? GO:0000027 ... P60491 25984971
    193494 4zer:1U (3.1) BS03 MG ? GO:0000027 ... P60491 25984971
    193495 4zer:1U (3.1) BS04 MG ? GO:0000027 ... P60491 25984971
    193496 4zer:1U (3.1) BS05 MG ? GO:0000027 ... P60491 25984971
    193497 4zer:1V (3.1) BS01 rna ? GO:0003723 ... P60492 25984971
    193498 4zer:1V (3.1) BS02 MG ? GO:0003723 ... P60492 25984971
    193499 4zer:1V (3.1) BS03 MG ? GO:0003723 ... P60492 25984971
    193500 4zer:1V (3.1) BS04 MG ? GO:0003723 ... P60492 25984971
    193501 4zer:1W (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 25984971
    193502 4zer:1W (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 25984971
    193503 4zer:1X (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 25984971
    193504 4zer:1Y (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 25984971
    193505 4zer:1Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 25984971
    193506 4zer:1Z (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 25984971
    193507 4zer:1Z (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 25984971
    193508 4zer:1Z (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 25984971
    193509 4zer:1b (3.1) BS01 rna ? GO:0003735 ... P80371 25984971
    193510 4zer:1b (3.1) BS02 MG ? GO:0003735 ... P80371 25984971
    193511 4zer:1d (3.1) BS01 rna ? GO:0003723 ... P80373 25984971
    193512 4zer:1d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    193513 4zer:1e (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 25984971
    193514 4zer:1e (3.1) BS02 MG ? GO:0003723 ... Q5SHQ5 25984971
    193515 4zer:1f (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 25984971
    193516 4zer:1g (3.1) BS01 rna ? GO:0000028 ... P17291 25984971
    193517 4zer:1h (3.1) BS01 rna ? GO:0003735 ... P0DOY9 25984971
    193518 4zer:1i (3.1) BS01 rna ? GO:0000049 ... P80374 25984971
    193519 4zer:1i (3.1) BS02 rna ? GO:0000049 ... P80374 25984971
    193520 4zer:1j (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 25984971
    193521 4zer:1k (3.1) BS01 rna ? GO:0003735 ... P80376 25984971
    193522 4zer:1l (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 25984971
    193523 4zer:1l (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 25984971
    193524 4zer:1m (3.1) BS01 rna ? GO:0000049 ... P80377 25984971
    193525 4zer:1m (3.1) BS02 MG ? GO:0000049 ... P80377 25984971
    193526 4zer:1n (3.1) BS01 rna ? GO:0003735 ... P0DOY6 25984971
    193527 4zer:1n (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 25984971
    193528 4zer:1o (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 25984971
    193529 4zer:1o (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 25984971
    193530 4zer:1p (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 25984971
    193531 4zer:1q (3.1) BS01 rna N/A GO:0003735 ... N/A 25984971
    193532 4zer:1r (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 25984971
    193533 4zer:1s (3.1) BS01 rna ? GO:0003723 ... Q5SHP2 25984971
    193534 4zer:1t (3.1) BS01 rna ? GO:0003723 ... P80380 25984971
    193535 4zer:20 (3.1) BS01 rna ? GO:0003735 ... P60493 25984971
    193536 4zer:20 (3.1) BS02 rna ? GO:0003735 ... P60493 25984971
    193537 4zer:20 (3.1) BS03 rna ? GO:0003735 ... P60493 25984971
    193538 4zer:21 (3.1) BS01 rna ? GO:0003735 ... P60494 25984971
    193539 4zer:22 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 25984971
    193540 4zer:23 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 25984971
    193541 4zer:23 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 25984971
    193542 4zer:23 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 25984971
    193543 4zer:24 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 25984971
    193544 4zer:24 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 25984971
    193545 4zer:25 (3.1) BS01 rna ? GO:0003735 ... P80339 25984971
    193546 4zer:25 (3.1) BS02 MG ? GO:0003735 ... P80339 25984971
    193547 4zer:25 (3.1) BS03 ZN ? GO:0003735 ... P80339 25984971
    193548 4zer:26 (3.1) BS01 rna ? GO:0000049 ... P35871 25984971
    193549 4zer:26 (3.1) BS02 ZN ? GO:0000049 ... P35871 25984971
    193550 4zer:27 (3.1) BS01 rna ? GO:0003735 ... P80340 25984971
    193551 4zer:28 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 25984971
    193552 4zer:29 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 25984971
    193553 4zer:29 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 25984971
    193554 4zer:2D (3.1) BS01 rna ? GO:0002181 ... P60405 25984971
    193555 4zer:2D (3.1) BS02 rna ? GO:0002181 ... P60405 25984971
    193556 4zer:2D (3.1) BS03 MG ? GO:0002181 ... P60405 25984971
    193557 4zer:2D (3.1) BS04 MG ? GO:0002181 ... P60405 25984971
    193558 4zer:2D (3.1) BS05 MG ? GO:0002181 ... P60405 25984971
    193559 4zer:2D (3.1) BS06 MG ? GO:0002181 ... P60405 25984971
    193560 4zer:2D (3.1) BS07 MG ? GO:0002181 ... P60405 25984971
    193561 4zer:2E (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 25984971
    193562 4zer:2E (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 25984971
    193563 4zer:2F (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 25984971
    193564 4zer:2F (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 25984971
    193565 4zer:2G (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 25984971
    193566 4zer:2G (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 25984971
    193567 4zer:2G (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 25984971
    193568 4zer:2G (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 25984971
    193569 4zer:2H (3.1) BS01 rna ? GO:0002181 ... P0DOY8 25984971
    193570 4zer:2I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 25984971
    193571 4zer:2N (3.1) BS01 rna ? GO:0003729 ... P60488 25984971
    193572 4zer:2O (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 25984971
    193573 4zer:2O (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 25984971
    193574 4zer:2P (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 25984971
    193575 4zer:2Q (3.1) BS01 rna ? GO:0000049 ... P60489 25984971
    193576 4zer:2Q (3.1) BS02 rna ? GO:0000049 ... P60489 25984971
    193577 4zer:2R (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 25984971
    193578 4zer:2S (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 25984971
    193579 4zer:2S (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 25984971
    193580 4zer:2T (3.1) BS01 rna ? GO:0003735 ... P60490 25984971
    193581 4zer:2T (3.1) BS02 rna ? GO:0003735 ... P60490 25984971
    193582 4zer:2U (3.1) BS01 rna ? GO:0000027 ... P60491 25984971
    193583 4zer:2V (3.1) BS01 rna ? GO:0003723 ... P60492 25984971
    193584 4zer:2V (3.1) BS02 MG ? GO:0003723 ... P60492 25984971
    193585 4zer:2V (3.1) BS03 MG ? GO:0003723 ... P60492 25984971
    193586 4zer:2W (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 25984971
    193587 4zer:2X (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 25984971
    193588 4zer:2Y (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 25984971
    193589 4zer:2Y (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 25984971
    193590 4zer:2Z (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 25984971
    193591 4zer:2Z (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 25984971
    193592 4zer:2Z (3.1) BS03 rna ? GO:0003723 ... Q5SHZ1 25984971
    193593 4zer:2b (3.1) BS01 rna ? GO:0003735 ... P80371 25984971
    193594 4zer:2d (3.1) BS01 rna ? GO:0003723 ... P80373 25984971
    193595 4zer:2d (3.1) BS02 SF4 ? GO:0003723 ... P80373 25984971
    193596 4zer:2e (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 25984971
    193597 4zer:2f (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 25984971
    193598 4zer:2f (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 25984971
    193599 4zer:2g (3.1) BS01 rna ? GO:0000028 ... P17291 25984971
    193600 4zer:2h (3.1) BS01 rna ? GO:0003735 ... P0DOY9 25984971
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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