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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    192601 4z3s:1e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    192602 4z3s:1f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 26028538
    192603 4z3s:1f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 26028538
    192604 4z3s:1g (2.65) BS01 rna ? GO:0000028 ... P17291 26028538
    192605 4z3s:1g (2.65) BS02 rna ? GO:0000028 ... P17291 26028538
    192606 4z3s:1h (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192607 4z3s:1i (2.65) BS01 rna ? GO:0000049 ... P80374 26028538
    192608 4z3s:1i (2.65) BS02 rna ? GO:0000049 ... P80374 26028538
    192609 4z3s:1j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 26028538
    192610 4z3s:1k (2.65) BS01 rna ? GO:0003735 ... P80376 26028538
    192611 4z3s:1k (2.65) BS02 MG ? GO:0003735 ... P80376 26028538
    192612 4z3s:1l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 26028538
    192613 4z3s:1l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    192614 4z3s:1m (2.65) BS01 rna ? GO:0000049 ... P80377 26028538
    192615 4z3s:1m (2.65) BS02 rna ? GO:0000049 ... P80377 26028538
    192616 4z3s:1m (2.65) BS03 rna ? GO:0000049 ... P80377 26028538
    192617 4z3s:1m (2.65) BS04 rna ? GO:0000049 ... P80377 26028538
    192618 4z3s:1m (2.65) BS05 MG ? GO:0000049 ... P80377 26028538
    192619 4z3s:1n (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192620 4z3s:1n (2.65) BS02 ZN N/A GO:0003735 ... N/A 26028538
    192621 4z3s:1n (2.65) BS03 MG N/A GO:0003735 ... N/A 26028538
    192622 4z3s:1o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 26028538
    192623 4z3s:1o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 26028538
    192624 4z3s:1p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 26028538
    192625 4z3s:1q (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192626 4z3s:1r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 26028538
    192627 4z3s:1s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 26028538
    192628 4z3s:1t (2.65) BS01 rna ? GO:0003723 ... P80380 26028538
    192629 4z3s:1t (2.65) BS02 MG ? GO:0003723 ... P80380 26028538
    192630 4z3s:20 (2.65) BS01 rna ? GO:0003735 ... P60493 26028538
    192631 4z3s:20 (2.65) BS02 rna ? GO:0003735 ... P60493 26028538
    192632 4z3s:21 (2.65) BS01 rna ? GO:0003735 ... P60494 26028538
    192633 4z3s:21 (2.65) BS02 MG ? GO:0003735 ... P60494 26028538
    192634 4z3s:22 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 26028538
    192635 4z3s:23 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 26028538
    192636 4z3s:23 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 26028538
    192637 4z3s:23 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 26028538
    192638 4z3s:24 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 26028538
    192639 4z3s:24 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 26028538
    192640 4z3s:25 (2.65) BS01 rna ? GO:0003735 ... P80339 26028538
    192641 4z3s:25 (2.65) BS02 MG ? GO:0003735 ... P80339 26028538
    192642 4z3s:25 (2.65) BS03 ZN ? GO:0003735 ... P80339 26028538
    192643 4z3s:26 (2.65) BS01 rna ? GO:0000049 ... P35871 26028538
    192644 4z3s:26 (2.65) BS02 ZN ? GO:0000049 ... P35871 26028538
    192645 4z3s:27 (2.65) BS01 rna ? GO:0003735 ... P80340 26028538
    192646 4z3s:28 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 26028538
    192647 4z3s:29 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 26028538
    192648 4z3s:29 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 26028538
    192649 4z3s:2D (2.65) BS01 rna ? GO:0002181 ... P60405 26028538
    192650 4z3s:2D (2.65) BS02 rna ? GO:0002181 ... P60405 26028538
    192651 4z3s:2D (2.65) BS03 MG ? GO:0002181 ... P60405 26028538
    192652 4z3s:2D (2.65) BS04 MG ? GO:0002181 ... P60405 26028538
    192653 4z3s:2D (2.65) BS05 MG ? GO:0002181 ... P60405 26028538
    192654 4z3s:2D (2.65) BS06 MG ? GO:0002181 ... P60405 26028538
    192655 4z3s:2D (2.65) BS07 MG ? GO:0002181 ... P60405 26028538
    192656 4z3s:2E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 26028538
    192657 4z3s:2E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 26028538
    192658 4z3s:2F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 26028538
    192659 4z3s:2F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 26028538
    192660 4z3s:2F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 26028538
    192661 4z3s:2G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 26028538
    192662 4z3s:2G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 26028538
    192663 4z3s:2G (2.65) BS03 rna ? GO:0000049 ... Q5SHQ0 26028538
    192664 4z3s:2H (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192665 4z3s:2I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 26028538
    192666 4z3s:2N (2.65) BS01 rna ? GO:0003729 ... P60488 26028538
    192667 4z3s:2O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 26028538
    192668 4z3s:2O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 26028538
    192669 4z3s:2P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 26028538
    192670 4z3s:2P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 26028538
    192671 4z3s:2Q (2.65) BS01 rna ? GO:0000049 ... P60489 26028538
    192672 4z3s:2Q (2.65) BS02 rna ? GO:0000049 ... P60489 26028538
    192673 4z3s:2Q (2.65) BS03 rna ? GO:0000049 ... P60489 26028538
    192674 4z3s:2Q (2.65) BS04 MG ? GO:0000049 ... P60489 26028538
    192675 4z3s:2Q (2.65) BS05 MG ? GO:0000049 ... P60489 26028538
    192676 4z3s:2R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 26028538
    192677 4z3s:2S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 26028538
    192678 4z3s:2S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 26028538
    192679 4z3s:2T (2.65) BS01 rna ? GO:0003735 ... P60490 26028538
    192680 4z3s:2T (2.65) BS02 rna ? GO:0003735 ... P60490 26028538
    192681 4z3s:2U (2.65) BS01 rna ? GO:0000027 ... P60491 26028538
    192682 4z3s:2U (2.65) BS02 MG ? GO:0000027 ... P60491 26028538
    192683 4z3s:2U (2.65) BS03 MG ? GO:0000027 ... P60491 26028538
    192684 4z3s:2U (2.65) BS04 MG ? GO:0000027 ... P60491 26028538
    192685 4z3s:2V (2.65) BS01 rna ? GO:0003723 ... P60492 26028538
    192686 4z3s:2V (2.65) BS02 MG ? GO:0003723 ... P60492 26028538
    192687 4z3s:2V (2.65) BS03 MG ? GO:0003723 ... P60492 26028538
    192688 4z3s:2V (2.65) BS04 MG ? GO:0003723 ... P60492 26028538
    192689 4z3s:2W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 26028538
    192690 4z3s:2W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 26028538
    192691 4z3s:2X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 26028538
    192692 4z3s:2X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 26028538
    192693 4z3s:2Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 26028538
    192694 4z3s:2Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 26028538
    192695 4z3s:2Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 26028538
    192696 4z3s:2Z (2.65) BS02 MG ? GO:0003723 ... Q5SHZ1 26028538
    192697 4z3s:2b (2.65) BS01 rna ? GO:0003735 ... P80371 26028538
    192698 4z3s:2c (2.65) BS01 rna ? GO:0003676 ... P80372 26028538
    192699 4z3s:2d (2.65) BS01 rna ? GO:0003723 ... P80373 26028538
    192700 4z3s:2d (2.65) BS02 SF4 ? GO:0003723 ... P80373 26028538
    192701 4z3s:2d (2.65) BS03 MG ? GO:0003723 ... P80373 26028538
    192702 4z3s:2e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 26028538
    192703 4z3s:2e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 26028538
    192704 4z3s:2f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 26028538
    192705 4z3s:2f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 26028538
    192706 4z3s:2g (2.65) BS01 rna ? GO:0000028 ... P17291 26028538
    192707 4z3s:2g (2.65) BS02 rna ? GO:0000028 ... P17291 26028538
    192708 4z3s:2h (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192709 4z3s:2i (2.65) BS01 rna ? GO:0000049 ... P80374 26028538
    192710 4z3s:2i (2.65) BS02 rna ? GO:0000049 ... P80374 26028538
    192711 4z3s:2j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 26028538
    192712 4z3s:2k (2.65) BS01 rna ? GO:0003735 ... P80376 26028538
    192713 4z3s:2k (2.65) BS02 MG ? GO:0003735 ... P80376 26028538
    192714 4z3s:2l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 26028538
    192715 4z3s:2l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 26028538
    192716 4z3s:2m (2.65) BS01 rna ? GO:0000049 ... P80377 26028538
    192717 4z3s:2m (2.65) BS02 rna ? GO:0000049 ... P80377 26028538
    192718 4z3s:2n (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192719 4z3s:2n (2.65) BS02 ZN N/A GO:0003735 ... N/A 26028538
    192720 4z3s:2o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 26028538
    192721 4z3s:2o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 26028538
    192722 4z3s:2p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 26028538
    192723 4z3s:2q (2.65) BS01 rna N/A GO:0003735 ... N/A 26028538
    192724 4z3s:2q (2.65) BS02 MG N/A GO:0003735 ... N/A 26028538
    192725 4z3s:2q (2.65) BS03 MG N/A GO:0003735 ... N/A 26028538
    192726 4z3s:2r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 26028538
    192727 4z3s:2s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 26028538
    192728 4z3s:2t (2.65) BS01 rna ? GO:0003723 ... P80380 26028538
    192729 4z3s:2t (2.65) BS02 MG ? GO:0003723 ... P80380 26028538
    192730 4z41:A (1.89) BS01 4KV 3.2.1.17 GO:0003796 ... P00698 26280387
    192731 4z41:A (1.89) BS02 DMS 3.2.1.17 GO:0003796 ... P00698 26280387
    192732 4z46:A (1.85) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 25974859
    192733 4z4c:A (2.303) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.8nM
    192734 4z4c:A (2.303) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.8nM
    192735 4z4c:A (2.303) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192736 4z4d:A (1.6) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.9nM
    192737 4z4d:A (1.6) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.9nM
    192738 4z4d:A (1.6) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192739 4z4e:A (1.8) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.9nM
    192740 4z4e:A (1.8) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.9nM
    192741 4z4e:A (1.8) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192742 4z4f:A (2.8) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=0.45nM
    192743 4z4f:A (2.8) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=0.45nM
    192744 4z4f:A (2.8) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192745 4z4g:A (2.7) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.7nM
    192746 4z4g:A (2.7) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.7nM
    192747 4z4g:A (2.7) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192748 4z4h:A (2.504) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.5nM
    192749 4z4h:A (2.504) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.5nM
    192750 4z4h:A (2.504) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192751 4z4i:A (2.801) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.8nM
    192752 4z4i:A (2.801) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634 PDBbind: Kd=1.8nM
    192753 4z4i:A (2.801) BS03 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 26359634
    192754 4z4k:A (2.8) BS01 ZN ? GO:0003674 ... P42212
    Q86VP1    		 27062441
    192755 4z4k:A (2.8) BS02 ZN ? GO:0003674 ... P42212
    Q86VP1    		 27062441
    192756 4z4k:B (2.8) BS01 ZN ? GO:0003674 ... P42212
    Q86VP1    		 27062441
    192757 4z4k:B (2.8) BS02 ZN ? GO:0003674 ... P42212
    Q86VP1    		 27062441
    192758 4z4m:A (2.15) BS01 ZN ? GO:0003674 ... P42212
    Q86VP1    		 27062441
    192759 4z4m:B (2.15) BS01 ZN ? GO:0003674 ... P42212
    Q86VP1    		 27062441
    192760 4z4q:A (3.04) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192761 4z4q:A (3.04) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192762 4z4q:A (3.04) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192763 4z4q:A (3.04) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192764 4z4q:A (3.04) BS05 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192765 4z4q:A (3.04) BS06 PDQ 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192766 4z4q:B (3.04) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192767 4z4q:B (3.04) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192768 4z4q:B (3.04) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192769 4z4q:B (3.04) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192770 4z4q:B (3.04) BS05 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192771 4z4q:B (3.04) BS06 PDQ 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192772 4z53:A (3.26) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192773 4z53:A (3.26) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192774 4z53:A (3.26) BS03 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192775 4z53:A (3.26) BS04 TR6 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192776 4z53:B (3.26) BS01 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192777 4z53:B (3.26) BS02 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192778 4z53:B (3.26) BS03 dna 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192779 4z53:B (3.26) BS04 MG 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192780 4z53:B (3.26) BS05 TR6 5.6.2.2 GO:0003677 ... P72525
    Q59961    		 N/A
    192781 4z55:A (1.55) BS01 4LO 2.7.10.1 GO:0004672 ... Q9UM73 26750252 MOAD: ic50=13nM
    192782 4z5t:A (2.8) BS01 dna ? GO:0000786 ... Q6NXT2 26779285
    192783 4z5t:A (2.8) BS02 dna ? GO:0000786 ... Q6NXT2 26779285
    192784 4z5t:B (2.8) BS01 dna ? GO:0000781 ... P62805 26779285
    192785 4z5t:B (2.8) BS02 dna ? GO:0000781 ... P62805 26779285
    192786 4z5t:C (2.8) BS01 dna ? GO:0000786 ... P04908 26779285
    192787 4z5t:C (2.8) BS02 dna ? GO:0000786 ... P04908 26779285
    192788 4z5t:D (2.8) BS01 dna ? GO:0000786 ... P06899 26779285
    192789 4z5t:D (2.8) BS02 dna ? GO:0000786 ... P06899 26779285
    192790 4z5t:E (2.8) BS01 dna ? GO:0000786 ... Q6NXT2 26779285
    192791 4z5t:E (2.8) BS02 dna ? GO:0000786 ... Q6NXT2 26779285
    192792 4z5t:F (2.8) BS01 dna ? GO:0000781 ... P62805 26779285
    192793 4z5t:F (2.8) BS02 dna ? GO:0000781 ... P62805 26779285
    192794 4z5t:G (2.8) BS01 dna ? GO:0000786 ... P04908 26779285
    192795 4z5t:G (2.8) BS02 dna ? GO:0000786 ... P04908 26779285
    192796 4z5t:H (2.8) BS01 dna ? GO:0000786 ... P06899 26779285
    192797 4z5t:H (2.8) BS02 dna ? GO:0000786 ... P06899 26779285
    192798 4z5x:A (2.1) BS01 GDE 2.4.1.1 GO:0000166 ... P00489 25980608 MOAD: Ki=1730uM
    192799 4z5x:A (2.1) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 25980608
    192800 4z66:A (2.5) BS01 dna ? GO:0000786 ... P84233 26416878
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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