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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    190401 4yed:B (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    190402 4yed:C (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    190403 4yed:D (1.9) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    190404 4yek:A (2.55) BS01 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    190405 4yek:A (2.55) BS02 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    190406 4yek:B (2.55) BS01 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    190407 4yek:B (2.55) BS02 THM 2.4.2.4 GO:0004645 ... Q7CP66 26919527
    190408 4yew:C (2.683) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190409 4yex:C (3.2) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190410 4yey:C (3.354) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190411 4yf0:A (2.79) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190412 4yf0:B (2.79) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190413 4yfh:A (3.49) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190414 4yfh:B (3.49) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190415 4yfk:D (3.571) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190416 4yfk:D (3.571) BS02 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190417 4yfk:D (3.571) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190418 4yfk:D (3.571) BS04 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190419 4yfk:D (3.571) BS05 4C6 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190420 4yfk:J (3.571) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190421 4yfk:J (3.571) BS02 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190422 4yfk:J (3.571) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190423 4yfk:J (3.571) BS04 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190424 4yfk:J (3.571) BS05 4C6 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190425 4yfn:D (3.817) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190426 4yfn:D (3.817) BS02 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190427 4yfn:D (3.817) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190428 4yfn:D (3.817) BS04 4C2 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190429 4yfn:I (3.817) BS01 4C2 2.7.7.6 GO:0000428 ... A7ZUK1 25798859
    190430 4yfn:J (3.817) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190431 4yfn:J (3.817) BS02 4C2 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190432 4yfp:A (1.951) BS01 RET ? GO:0001972 ... P29373 27310917
    190433 4yfq:A (1.62) BS01 RET ? GO:0001972 ... P29373 27310917
    190434 4yfr:A (1.952) BS01 RET ? GO:0001972 ... P29373 27310917
    190435 4yft:C (2.914) BS01 dna ? GO:0003677 ... P0ACF0 27482541
    190436 4yfx:C (3.844) BS01 4C4 2.7.7.6 GO:0000428 ... A7ZUK1 25798859
    190437 4yfx:D (3.844) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190438 4yfx:D (3.844) BS02 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190439 4yfx:D (3.844) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190440 4yfx:D (3.844) BS04 4C4 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190441 4yfx:J (3.844) BS01 MG 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190442 4yfx:J (3.844) BS02 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190443 4yfx:J (3.844) BS03 ZN 2.7.7.6 GO:0000287 ... A7ZUK2 25798859
    190444 4yfy:A (1.9) BS01 0FX ? GO:0004479 ... M9P0Q2 25752909
    190445 4yfy:A (1.9) BS02 1YJ ? GO:0004479 ... M9P0Q2 25752909
    190446 4yfy:B (1.9) BS01 0FX ? GO:0004479 ... M9P0Q2 25752909
    190447 4yfy:B (1.9) BS02 1YJ ? GO:0004479 ... M9P0Q2 25752909
    190448 4yfz:A (1.5) BS01 BGC ? GO:0019028 ... B6RGK2 26420502
    190449 4yfz:A (1.5) BS02 GAL ? GO:0019028 ... B6RGK2 26420502
    190450 4yg0:A (1.285) BS01 GAL ? GO:0019028 ... B6RGK2 26420502
    190451 4yg2:D (3.7) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190452 4yg2:D (3.7) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190453 4yg2:D (3.7) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190454 4yg2:J (3.7) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190455 4yg2:J (3.7) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190456 4yg2:J (3.7) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190457 4yg2:J (3.7) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T8 23389035
    190458 4yg6:A (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    190459 4yg6:B (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    190460 4yg6:B (1.46) BS02 GAL ? GO:0019028 ... A2T3T2 26420502
    190461 4yg6:C (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    190462 4yg6:D (1.46) BS01 GAL ? GO:0019028 ... A2T3T2 26420502
    190463 4yg7:K (3.77) BS01 dna 2.7.11.1 GO:0000287 ... P23874 26222023
    190464 4yga:A (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    190465 4yga:A (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    190466 4yga:A (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    190467 4yga:A (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    190468 4yga:C (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    190469 4yga:C (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    190470 4yga:C (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    190471 4yga:C (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    190472 4yga:E (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    190473 4yga:E (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    190474 4yga:E (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    190475 4yga:E (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    190476 4yga:G (2.94) BS01 CA ? GO:0004672 ... Q9BJF5 26305940
    190477 4yga:G (2.94) BS02 CA ? GO:0004672 ... Q9BJF5 26305940
    190478 4yga:G (2.94) BS03 CA ? GO:0004672 ... Q9BJF5 26305940
    190479 4yga:G (2.94) BS04 CA ? GO:0004672 ... Q9BJF5 26305940
    190480 4ygc:A (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    190481 4ygc:A (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    190482 4ygc:C (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    190483 4ygc:C (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    190484 4ygc:E (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    190485 4ygc:E (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    190486 4ygc:G (2.4) BS01 CA ? GO:0016020 ... P49257 32356523
    190487 4ygc:G (2.4) BS02 CA ? GO:0016020 ... P49257 32356523
    190488 4ygd:A (2.51) BS01 CA ? GO:0016020 ... P49257 32356523
    190489 4ygd:A (2.51) BS02 CA ? GO:0016020 ... P49257 32356523
    190490 4ygd:C (2.51) BS01 CA ? GO:0016020 ... P49257 32356523
    190491 4ygd:C (2.51) BS02 CA ? GO:0016020 ... P49257 32356523
    190492 4ygd:E (2.51) BS01 CA ? GO:0016020 ... P49257 32356523
    190493 4ygd:E (2.51) BS02 CA ? GO:0016020 ... P49257 32356523
    190494 4ygd:G (2.51) BS01 CA ? GO:0016020 ... P49257 32356523
    190495 4ygd:G (2.51) BS02 CA ? GO:0016020 ... P49257 32356523
    190496 4yge:A (3.05) BS01 CA ? GO:0016020 ... P49257 32356523
    190497 4yge:A (3.05) BS02 CA ? GO:0016020 ... P49257 32356523
    190498 4yge:B (3.05) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    190499 4yge:B (3.05) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    190500 4yge:D (3.05) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    190501 4yge:D (3.05) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    190502 4yge:F (3.05) BS01 CA ? GO:0005509 ... Q8NI22 32356523
    190503 4yge:F (3.05) BS02 CA ? GO:0005509 ... Q8NI22 32356523
    190504 4ygg:A (1.9) BS01 RET ? GO:0001972 ... P29373 27310917
    190505 4ygh:A (2.1) BS01 RET ? GO:0001972 ... P29373 27310917
    190506 4ygj:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190507 4ygj:A (1.1) BS02 BR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190508 4ygj:A (1.1) BS03 BR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190509 4ygj:A (1.1) BS04 BR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190510 4ygk:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190511 4ygl:A (1.51) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190512 4ygn:A (1.23) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190513 4ygn:A (1.23) BS02 IOD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    190514 4ygo:A (2.5) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    190515 4ygo:A (2.5) BS02 CA 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    190516 4ygo:C (2.5) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    190517 4ygo:D (2.5) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    190518 4ygo:D (2.5) BS02 CA 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    190519 4ygo:E (2.5) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 26410587
    190520 4ygx:D (2.95) BS01 peptide 3.1.3.16 GO:0004721 ... Q9VWE4 26332362
    190521 4ygz:A (2.06) BS01 RET ? GO:0001972 ... P29373 27310917
    190522 4yh0:A (2.144) BS01 RET ? GO:0001972 ... P29373 27310917
    190523 4yh2:A (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    190524 4yh2:B (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    190525 4yh2:C (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    190526 4yh2:D (1.72) BS01 GSH 2.5.1.18 GO:0003824 ... A1ZB71 26487708
    190527 4yh8:A (1.7) BS01 ZN ? GO:0000243 ... Q09176 26215567
    190528 4yh8:A (1.7) BS02 ZN ? GO:0000243 ... Q09176 26215567
    190529 4yhg:A (2.4) BS01 BGC 3.2.1.4 GO:0000272 ... A0A076MPD7 26133573
    190530 4yhg:A (2.4) BS02 BGC 3.2.1.4 GO:0000272 ... A0A076MPD7 26133573
    190531 4yhh:B (3.417) BS01 rna ? GO:0003735 ... P80371 25753625
    190532 4yhh:D (3.417) BS01 rna ? GO:0003723 ... P80373 25753625
    190533 4yhh:D (3.417) BS02 ZN ? GO:0003723 ... P80373 25753625
    190534 4yhh:E (3.417) BS01 rna ? GO:0003723 ... Q5SHQ5 25753625
    190535 4yhh:F (3.417) BS01 rna ? GO:0003735 ... Q5SLP8 25753625
    190536 4yhh:G (3.417) BS01 rna ? GO:0000028 ... P17291 25753625
    190537 4yhh:H (3.417) BS01 rna ? GO:0003735 ... P0DOY9 25753625
    190538 4yhh:I (3.417) BS01 rna ? GO:0000049 ... P80374 25753625
    190539 4yhh:J (3.417) BS01 rna ? GO:0000049 ... Q5SHN7 25753625
    190540 4yhh:K (3.417) BS01 rna ? GO:0003735 ... P80376 25753625
    190541 4yhh:L (3.417) BS01 rna ? GO:0000049 ... Q5SHN3 25753625
    190542 4yhh:M (3.417) BS01 rna ? GO:0000049 ... P80377 25753625
    190543 4yhh:N (3.417) BS01 rna ? GO:0003735 ... P0DOY6 25753625
    190544 4yhh:N (3.417) BS02 ZN ? GO:0003735 ... P0DOY6 25753625
    190545 4yhh:O (3.417) BS01 rna ? GO:0003735 ... Q5SJ76 25753625
    190546 4yhh:P (3.417) BS01 rna ? GO:0003735 ... Q5SJH3 25753625
    190547 4yhh:Q (3.417) BS01 rna ? GO:0003735 ... P0DOY7 25753625
    190548 4yhh:R (3.417) BS01 rna ? GO:0003735 ... Q5SLQ0 25753625
    190549 4yhh:S (3.417) BS01 rna ? GO:0003723 ... Q5SHP2 25753625
    190550 4yhh:T (3.417) BS01 rna ? GO:0003723 ... P80380 25753625
    190551 4yhj:A (2.6) BS01 AN2 2.7.11.16 GO:0004672 ... P32298 26134571
    190552 4yhj:B (2.6) BS01 AN2 2.7.11.16 GO:0004672 ... P32298 26134571
    190553 4yhw:A (3.25) BS01 rna ? GO:0000398 ... Q03338 26161500 PDBbind: Kd=110nM
    190554 4yhw:B (3.25) BS01 rna ? GO:0000398 ... Q03338 26161500 PDBbind: Kd=110nM
    190555 4yi0:C (1.806) BS01 peptide ? GO:0005737 ... P52293 N/A
    190556 4yi3:A (1.8) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 26088352
    190557 4yi3:A (1.8) BS02 4D0 2.4.1.1 GO:0000166 ... P00489 26088352 MOAD: Ki=4.95uM
    190558 4yi3:A (1.8) BS03 IMP 2.4.1.1 GO:0000166 ... P00489 26088352
    190559 4yi5:A (1.8) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 26088352
    190560 4yi5:A (1.8) BS02 4D1 2.4.1.1 GO:0000166 ... P00489 26088352 MOAD: Ki=2.53uM
    190561 4yi5:A (1.8) BS03 IMP 2.4.1.1 GO:0000166 ... P00489 26088352
    190562 4yi7:A (1.853) BS01 BE2 2.4.2.18 GO:0000162 ... P00500 N/A
    190563 4yi8:A (1.2) BS01 CA ? GO:0001750 ... P21457 26584024
    190564 4yi8:A (1.2) BS02 CA ? GO:0001750 ... P21457 26584024
    190565 4yi9:A (1.35) BS01 CA ? GO:0001750 ... P21457 26584024
    190566 4yia:A (1.58) BS01 CA ? GO:0004867 ... P05543 N/A
    190567 4yia:A (1.58) BS02 IMN ? GO:0004867 ... P05543 N/A
    190568 4yic:A (1.6) BS01 CA ? GO:0015849 ... A0A0J9X284 N/A
    190569 4yic:A (1.6) BS02 6PC ? GO:0015849 ... A0A0J9X284 N/A
    190570 4yic:B (1.6) BS01 CA ? GO:0015849 ... A0A0J9X284 N/A
    190571 4yic:B (1.6) BS02 6PC ? GO:0015849 ... A0A0J9X284 N/A
    190572 4yih:A (1.82) BS01 MG 3.1.3.- GO:0000166 ... Q8TCD5 N/A
    190573 4yih:A (1.82) BS02 2O2 3.1.3.- GO:0000166 ... Q8TCD5 N/A PDBbind: -logKd/Ki=4.66, Ki=21.7uM
    190574 4yih:B (1.82) BS01 MG 3.1.3.- GO:0000166 ... Q8TCD5 N/A
    190575 4yih:B (1.82) BS02 2O2 3.1.3.- GO:0000166 ... Q8TCD5 N/A PDBbind: -logKd/Ki=4.66, Ki=21.7uM
    190576 4yir:A (3.0501) BS01 dna ? GO:0003677 ... P14736 25562780 PDBbind: Kd=430nM
    190577 4yir:A (3.0501) BS02 dna ? GO:0003677 ... P14736 25562780 PDBbind: Kd=430nM
    190578 4yit:A (3.24) BS01 dna ? GO:0004519 ... A0A158RFF2 27133026
    190579 4yit:A (3.24) BS02 dna ? GO:0004519 ... A0A158RFF2 27133026
    190580 4yit:A (3.24) BS03 CA ? GO:0004519 ... A0A158RFF2 27133026
    190581 4yit:A (3.24) BS04 CA ? GO:0004519 ... A0A158RFF2 27133026
    190582 4yit:A (3.24) BS05 CA ? GO:0004519 ... A0A158RFF2 27133026
    190583 4yit:D (3.24) BS01 dna ? GO:0004519 ... A0A158RFF2 27133026
    190584 4yit:D (3.24) BS02 dna ? GO:0004519 ... A0A158RFF2 27133026
    190585 4yit:D (3.24) BS03 CA ? GO:0004519 ... A0A158RFF2 27133026
    190586 4yit:D (3.24) BS04 CA ? GO:0004519 ... A0A158RFF2 27133026
    190587 4yiv:A (1.93) BS01 CO ? GO:0016020 ... S8GKS3 25955165
    190588 4yiv:A (1.93) BS02 CO ? GO:0016020 ... S8GKS3 25955165
    190589 4yiw:A (2.45) BS01 ZN 3.5.2.3 GO:0004038 ... Q81WF0 27499369
    190590 4yiw:A (2.45) BS02 ZN 3.5.2.3 GO:0004038 ... Q81WF0 27499369
    190591 4yiw:A (2.45) BS03 NCD 3.5.2.3 GO:0004038 ... Q81WF0 27499369
    190592 4yiw:B (2.45) BS01 ZN 3.5.2.3 GO:0004038 ... Q81WF0 27499369
    190593 4yiw:B (2.45) BS02 ZN 3.5.2.3 GO:0004038 ... Q81WF0 27499369
    190594 4yiw:B (2.45) BS03 NCD 3.5.2.3 GO:0004038 ... Q81WF0 27499369
    190595 4yix:A (2.6) BS01 MG ? GO:0000166 ... Q57ZF2 26117548
    190596 4yix:A (2.6) BS02 MG ? GO:0000166 ... Q57ZF2 26117548
    190597 4yix:A (2.6) BS03 ADP ? GO:0000166 ... Q57ZF2 26117548
    190598 4yiy:A (3.016) BS01 ANP ? GO:0000166 ... Q57ZF2 26117548
    190599 4yiy:A (3.016) BS02 ANP ? GO:0000166 ... Q57ZF2 26117548
    190600 4yiy:B (3.016) BS01 ANP ? GO:0000166 ... Q57ZF2 26117548
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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