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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    189201 4y4p:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    189202 4y4p:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    189203 4y4p:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    189204 4y4p:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 25775268
    189205 4y4p:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 25775268
    189206 4y4p:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 25775268
    189207 4y4p:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 25775268
    189208 4y4p:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 25775268
    189209 4y4p:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 25775268
    189210 4y4p:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 25775268
    189211 4y4p:1G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    189212 4y4p:1G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    189213 4y4p:1G (2.5) BS03 rna ? GO:0000049 ... Q5SHQ0 25775268
    189214 4y4p:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 25775268
    189215 4y4p:1H (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    189216 4y4p:1I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    189217 4y4p:1N (2.5) BS01 rna ? GO:0003729 ... P60488 25775268
    189218 4y4p:1N (2.5) BS02 MG ? GO:0003729 ... P60488 25775268
    189219 4y4p:1N (2.5) BS03 MG ? GO:0003729 ... P60488 25775268
    189220 4y4p:1N (2.5) BS04 MG ? GO:0003729 ... P60488 25775268
    189221 4y4p:1O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    189222 4y4p:1O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    189223 4y4p:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 25775268
    189224 4y4p:1O (2.5) BS04 MG ? GO:0003735 ... Q5SHP8 25775268
    189225 4y4p:1P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    189226 4y4p:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 25775268
    189227 4y4p:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 25775268
    189228 4y4p:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 25775268
    189229 4y4p:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 25775268
    189230 4y4p:1P (2.5) BS06 MG ? GO:0003735 ... Q5SHQ7 25775268
    189231 4y4p:1Q (2.5) BS01 rna ? GO:0000049 ... P60489 25775268
    189232 4y4p:1Q (2.5) BS02 rna ? GO:0000049 ... P60489 25775268
    189233 4y4p:1Q (2.5) BS03 rna ? GO:0000049 ... P60489 25775268
    189234 4y4p:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 25775268
    189235 4y4p:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 25775268
    189236 4y4p:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 25775268
    189237 4y4p:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 25775268
    189238 4y4p:1R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    189239 4y4p:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 25775268
    189240 4y4p:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 25775268
    189241 4y4p:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 25775268
    189242 4y4p:1S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    189243 4y4p:1S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    189244 4y4p:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 25775268
    189245 4y4p:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 25775268
    189246 4y4p:1T (2.5) BS01 rna ? GO:0003735 ... P60490 25775268
    189247 4y4p:1T (2.5) BS02 rna ? GO:0003735 ... P60490 25775268
    189248 4y4p:1T (2.5) BS03 MG ? GO:0003735 ... P60490 25775268
    189249 4y4p:1U (2.5) BS01 rna ? GO:0000027 ... P60491 25775268
    189250 4y4p:1U (2.5) BS02 MG ? GO:0000027 ... P60491 25775268
    189251 4y4p:1U (2.5) BS03 MG ? GO:0000027 ... P60491 25775268
    189252 4y4p:1U (2.5) BS04 MG ? GO:0000027 ... P60491 25775268
    189253 4y4p:1U (2.5) BS05 MG ? GO:0000027 ... P60491 25775268
    189254 4y4p:1U (2.5) BS06 MG ? GO:0000027 ... P60491 25775268
    189255 4y4p:1U (2.5) BS07 MG ? GO:0000027 ... P60491 25775268
    189256 4y4p:1U (2.5) BS08 MG ? GO:0000027 ... P60491 25775268
    189257 4y4p:1V (2.5) BS01 rna ? GO:0003723 ... P60492 25775268
    189258 4y4p:1V (2.5) BS02 MG ? GO:0003723 ... P60492 25775268
    189259 4y4p:1V (2.5) BS03 MG ? GO:0003723 ... P60492 25775268
    189260 4y4p:1V (2.5) BS04 MG ? GO:0003723 ... P60492 25775268
    189261 4y4p:1V (2.5) BS05 MG ? GO:0003723 ... P60492 25775268
    189262 4y4p:1V (2.5) BS06 MG ? GO:0003723 ... P60492 25775268
    189263 4y4p:1V (2.5) BS07 MG ? GO:0003723 ... P60492 25775268
    189264 4y4p:1V (2.5) BS08 MG ? GO:0003723 ... P60492 25775268
    189265 4y4p:1W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    189266 4y4p:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    189267 4y4p:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    189268 4y4p:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 25775268
    189269 4y4p:1W (2.5) BS05 MG ? GO:0003735 ... Q5SHP3 25775268
    189270 4y4p:1W (2.5) BS06 MG ? GO:0003735 ... Q5SHP3 25775268
    189271 4y4p:1X (2.5) BS01 rna ? GO:0000027 ... Q5SHP0 25775268
    189272 4y4p:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 25775268
    189273 4y4p:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 25775268
    189274 4y4p:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 25775268
    189275 4y4p:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 25775268
    189276 4y4p:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 25775268
    189277 4y4p:1Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    189278 4y4p:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    189279 4y4p:1Y (2.5) BS03 MG ? GO:0003723 ... Q5SHP9 25775268
    189280 4y4p:1Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    189281 4y4p:1Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    189282 4y4p:1Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 25775268
    189283 4y4p:1b (2.5) BS01 rna ? GO:0003735 ... P80371 25775268
    189284 4y4p:1b (2.5) BS02 MG ? GO:0003735 ... P80371 25775268
    189285 4y4p:1c (2.5) BS01 rna ? GO:0003676 ... P80372 25775268
    189286 4y4p:1d (2.5) BS01 rna ? GO:0003723 ... P80373 25775268
    189287 4y4p:1d (2.5) BS02 SF4 ? GO:0003723 ... P80373 25775268
    189288 4y4p:1e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    189289 4y4p:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    189290 4y4p:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 25775268
    189291 4y4p:1f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    189292 4y4p:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    189293 4y4p:1g (2.5) BS01 rna ? GO:0000028 ... P17291 25775268
    189294 4y4p:1g (2.5) BS02 rna ? GO:0000028 ... P17291 25775268
    189295 4y4p:1h (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    189296 4y4p:1i (2.5) BS01 rna ? GO:0000049 ... P80374 25775268
    189297 4y4p:1i (2.5) BS02 rna ? GO:0000049 ... P80374 25775268
    189298 4y4p:1j (2.5) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    189299 4y4p:1k (2.5) BS01 rna ? GO:0003735 ... P80376 25775268
    189300 4y4p:1k (2.5) BS02 MG ? GO:0003735 ... P80376 25775268
    189301 4y4p:1l (2.5) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    189302 4y4p:1l (2.5) BS02 rna ? GO:0000049 ... Q5SHN3 25775268
    189303 4y4p:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 25775268
    189304 4y4p:1m (2.5) BS01 rna ? GO:0000049 ... P80377 25775268
    189305 4y4p:1m (2.5) BS02 rna ? GO:0000049 ... P80377 25775268
    189306 4y4p:1m (2.5) BS03 MG ? GO:0000049 ... P80377 25775268
    189307 4y4p:1n (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    189308 4y4p:1n (2.5) BS02 ZN N/A GO:0003735 ... N/A 25775268
    189309 4y4p:1o (2.5) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    189310 4y4p:1o (2.5) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    189311 4y4p:1p (2.5) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    189312 4y4p:1q (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    189313 4y4p:1r (2.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    189314 4y4p:1s (2.5) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    189315 4y4p:1t (2.5) BS01 rna ? GO:0003723 ... P80380 25775268
    189316 4y4p:1t (2.5) BS02 MG ? GO:0003723 ... P80380 25775268
    189317 4y4p:20 (2.5) BS01 rna ? GO:0003735 ... P60493 25775268
    189318 4y4p:20 (2.5) BS02 rna ? GO:0003735 ... P60493 25775268
    189319 4y4p:21 (2.5) BS01 rna ? GO:0003735 ... P60494 25775268
    189320 4y4p:21 (2.5) BS02 MG ? GO:0003735 ... P60494 25775268
    189321 4y4p:22 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    189322 4y4p:23 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    189323 4y4p:23 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    189324 4y4p:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    189325 4y4p:24 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    189326 4y4p:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    189327 4y4p:25 (2.5) BS01 rna ? GO:0003735 ... P80339 25775268
    189328 4y4p:25 (2.5) BS02 ZN ? GO:0003735 ... P80339 25775268
    189329 4y4p:25 (2.5) BS03 MG ? GO:0003735 ... P80339 25775268
    189330 4y4p:26 (2.5) BS01 rna ? GO:0000049 ... P35871 25775268
    189331 4y4p:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 25775268
    189332 4y4p:27 (2.5) BS01 rna ? GO:0003735 ... P80340 25775268
    189333 4y4p:28 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    189334 4y4p:29 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    189335 4y4p:29 (2.5) BS02 MG ? GO:0003735 ... Q5SHR2 25775268
    189336 4y4p:29 (2.5) BS03 ZN ? GO:0003735 ... Q5SHR2 25775268
    189337 4y4p:2D (2.5) BS01 rna ? GO:0002181 ... P60405 25775268
    189338 4y4p:2D (2.5) BS02 rna ? GO:0002181 ... P60405 25775268
    189339 4y4p:2D (2.5) BS03 MG ? GO:0002181 ... P60405 25775268
    189340 4y4p:2D (2.5) BS04 MG ? GO:0002181 ... P60405 25775268
    189341 4y4p:2D (2.5) BS05 MG ? GO:0002181 ... P60405 25775268
    189342 4y4p:2D (2.5) BS06 MG ? GO:0002181 ... P60405 25775268
    189343 4y4p:2D (2.5) BS07 MG ? GO:0002181 ... P60405 25775268
    189344 4y4p:2D (2.5) BS08 MG ? GO:0002181 ... P60405 25775268
    189345 4y4p:2E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    189346 4y4p:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    189347 4y4p:2F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    189348 4y4p:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    189349 4y4p:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    189350 4y4p:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    189351 4y4p:2G (2.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    189352 4y4p:2G (2.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    189353 4y4p:2G (2.5) BS03 rna ? GO:0000049 ... Q5SHQ0 25775268
    189354 4y4p:2H (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    189355 4y4p:2I (2.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    189356 4y4p:2N (2.5) BS01 rna ? GO:0003729 ... P60488 25775268
    189357 4y4p:2O (2.5) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    189358 4y4p:2O (2.5) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    189359 4y4p:2P (2.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    189360 4y4p:2Q (2.5) BS01 rna ? GO:0000049 ... P60489 25775268
    189361 4y4p:2Q (2.5) BS02 rna ? GO:0000049 ... P60489 25775268
    189362 4y4p:2Q (2.5) BS03 rna ? GO:0000049 ... P60489 25775268
    189363 4y4p:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 25775268
    189364 4y4p:2Q (2.5) BS05 MG ? GO:0000049 ... P60489 25775268
    189365 4y4p:2Q (2.5) BS06 MG ? GO:0000049 ... P60489 25775268
    189366 4y4p:2R (2.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    189367 4y4p:2S (2.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    189368 4y4p:2S (2.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    189369 4y4p:2T (2.5) BS01 rna ? GO:0003735 ... P60490 25775268
    189370 4y4p:2T (2.5) BS02 rna ? GO:0003735 ... P60490 25775268
    189371 4y4p:2U (2.5) BS01 rna ? GO:0000027 ... P60491 25775268
    189372 4y4p:2U (2.5) BS02 MG ? GO:0000027 ... P60491 25775268
    189373 4y4p:2U (2.5) BS03 MG ? GO:0000027 ... P60491 25775268
    189374 4y4p:2U (2.5) BS04 MG ? GO:0000027 ... P60491 25775268
    189375 4y4p:2V (2.5) BS01 rna ? GO:0003723 ... P60492 25775268
    189376 4y4p:2V (2.5) BS02 MG ? GO:0003723 ... P60492 25775268
    189377 4y4p:2V (2.5) BS03 MG ? GO:0003723 ... P60492 25775268
    189378 4y4p:2W (2.5) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    189379 4y4p:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    189380 4y4p:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    189381 4y4p:2X (2.5) BS01 rna ? GO:0000027 ... Q5SHP0 25775268
    189382 4y4p:2X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 25775268
    189383 4y4p:2Y (2.5) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    189384 4y4p:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    189385 4y4p:2Z (2.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    189386 4y4p:2Z (2.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    189387 4y4p:2Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 25775268
    189388 4y4p:2b (2.5) BS01 rna ? GO:0003735 ... P80371 25775268
    189389 4y4p:2c (2.5) BS01 rna ? GO:0003676 ... P80372 25775268
    189390 4y4p:2d (2.5) BS01 rna ? GO:0003723 ... P80373 25775268
    189391 4y4p:2d (2.5) BS02 SF4 ? GO:0003723 ... P80373 25775268
    189392 4y4p:2d (2.5) BS03 MG ? GO:0003723 ... P80373 25775268
    189393 4y4p:2e (2.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    189394 4y4p:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    189395 4y4p:2f (2.5) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    189396 4y4p:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    189397 4y4p:2g (2.5) BS01 rna ? GO:0000028 ... P17291 25775268
    189398 4y4p:2g (2.5) BS02 rna ? GO:0000028 ... P17291 25775268
    189399 4y4p:2h (2.5) BS01 rna N/A GO:0003735 ... N/A 25775268
    189400 4y4p:2i (2.5) BS01 rna ? GO:0000049 ... P80374 25775268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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