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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    189001 4y4o:1U (2.3) BS03 MG ? GO:0000027 ... P60491 25775268
    189002 4y4o:1U (2.3) BS04 MG ? GO:0000027 ... P60491 25775268
    189003 4y4o:1U (2.3) BS05 MG ? GO:0000027 ... P60491 25775268
    189004 4y4o:1U (2.3) BS06 MG ? GO:0000027 ... P60491 25775268
    189005 4y4o:1U (2.3) BS07 MG ? GO:0000027 ... P60491 25775268
    189006 4y4o:1V (2.3) BS01 rna ? GO:0003723 ... P60492 25775268
    189007 4y4o:1V (2.3) BS02 MG ? GO:0003723 ... P60492 25775268
    189008 4y4o:1V (2.3) BS03 MG ? GO:0003723 ... P60492 25775268
    189009 4y4o:1V (2.3) BS04 MG ? GO:0003723 ... P60492 25775268
    189010 4y4o:1W (2.3) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    189011 4y4o:1W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    189012 4y4o:1W (2.3) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    189013 4y4o:1X (2.3) BS01 rna ? GO:0000027 ... Q5SHP0 25775268
    189014 4y4o:1Y (2.3) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    189015 4y4o:1Y (2.3) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    189016 4y4o:1Z (2.3) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    189017 4y4o:1Z (2.3) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    189018 4y4o:1b (2.3) BS01 rna ? GO:0003735 ... P80371 25775268
    189019 4y4o:1b (2.3) BS02 MG ? GO:0003735 ... P80371 25775268
    189020 4y4o:1c (2.3) BS01 rna ? GO:0003676 ... P80372 25775268
    189021 4y4o:1d (2.3) BS01 rna ? GO:0003723 ... P80373 25775268
    189022 4y4o:1d (2.3) BS02 SF4 ? GO:0003723 ... P80373 25775268
    189023 4y4o:1e (2.3) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    189024 4y4o:1e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    189025 4y4o:1f (2.3) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    189026 4y4o:1f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    189027 4y4o:1g (2.3) BS01 rna ? GO:0000028 ... P17291 25775268
    189028 4y4o:1h (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189029 4y4o:1i (2.3) BS01 rna ? GO:0000049 ... P80374 25775268
    189030 4y4o:1j (2.3) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    189031 4y4o:1k (2.3) BS01 rna ? GO:0003735 ... P80376 25775268
    189032 4y4o:1k (2.3) BS02 MG ? GO:0003735 ... P80376 25775268
    189033 4y4o:1l (2.3) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    189034 4y4o:1l (2.3) BS02 MG ? GO:0000049 ... Q5SHN3 25775268
    189035 4y4o:1m (2.3) BS01 rna ? GO:0000049 ... P80377 25775268
    189036 4y4o:1m (2.3) BS02 MG ? GO:0000049 ... P80377 25775268
    189037 4y4o:1n (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189038 4y4o:1n (2.3) BS02 ZN N/A GO:0003735 ... N/A 25775268
    189039 4y4o:1n (2.3) BS03 MG N/A GO:0003735 ... N/A 25775268
    189040 4y4o:1o (2.3) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    189041 4y4o:1o (2.3) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    189042 4y4o:1p (2.3) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    189043 4y4o:1q (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189044 4y4o:1r (2.3) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    189045 4y4o:1s (2.3) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    189046 4y4o:1t (2.3) BS01 rna ? GO:0003723 ... P80380 25775268
    189047 4y4o:1t (2.3) BS02 MG ? GO:0003723 ... P80380 25775268
    189048 4y4o:1y (2.3) BS01 rna ? GO:0005515 ... P0AD49 25775268
    189049 4y4o:1y (2.3) BS02 MG ? GO:0005515 ... P0AD49 25775268
    189050 4y4o:1y (2.3) BS03 MG ? GO:0005515 ... P0AD49 25775268
    189051 4y4o:20 (2.3) BS01 rna ? GO:0003735 ... P60493 25775268
    189052 4y4o:20 (2.3) BS02 rna ? GO:0003735 ... P60493 25775268
    189053 4y4o:21 (2.3) BS01 rna ? GO:0003735 ... P60494 25775268
    189054 4y4o:22 (2.3) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    189055 4y4o:23 (2.3) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    189056 4y4o:23 (2.3) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    189057 4y4o:23 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    189058 4y4o:24 (2.3) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    189059 4y4o:24 (2.3) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    189060 4y4o:25 (2.3) BS01 rna ? GO:0003735 ... P80339 25775268
    189061 4y4o:25 (2.3) BS02 MG ? GO:0003735 ... P80339 25775268
    189062 4y4o:25 (2.3) BS03 MG ? GO:0003735 ... P80339 25775268
    189063 4y4o:25 (2.3) BS04 ZN ? GO:0003735 ... P80339 25775268
    189064 4y4o:26 (2.3) BS01 rna ? GO:0000049 ... P35871 25775268
    189065 4y4o:26 (2.3) BS02 ZN ? GO:0000049 ... P35871 25775268
    189066 4y4o:27 (2.3) BS01 rna ? GO:0003735 ... P80340 25775268
    189067 4y4o:27 (2.3) BS02 MG ? GO:0003735 ... P80340 25775268
    189068 4y4o:28 (2.3) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    189069 4y4o:29 (2.3) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    189070 4y4o:29 (2.3) BS02 ZN ? GO:0003735 ... Q5SHR2 25775268
    189071 4y4o:2D (2.3) BS01 rna ? GO:0002181 ... P60405 25775268
    189072 4y4o:2D (2.3) BS02 rna ? GO:0002181 ... P60405 25775268
    189073 4y4o:2D (2.3) BS03 MG ? GO:0002181 ... P60405 25775268
    189074 4y4o:2D (2.3) BS04 MG ? GO:0002181 ... P60405 25775268
    189075 4y4o:2D (2.3) BS05 MG ? GO:0002181 ... P60405 25775268
    189076 4y4o:2D (2.3) BS06 MG ? GO:0002181 ... P60405 25775268
    189077 4y4o:2D (2.3) BS07 MG ? GO:0002181 ... P60405 25775268
    189078 4y4o:2D (2.3) BS08 MG ? GO:0002181 ... P60405 25775268
    189079 4y4o:2D (2.3) BS09 MG ? GO:0002181 ... P60405 25775268
    189080 4y4o:2D (2.3) BS10 MG ? GO:0002181 ... P60405 25775268
    189081 4y4o:2E (2.3) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    189082 4y4o:2E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    189083 4y4o:2E (2.3) BS03 MG ? GO:0003735 ... Q5SHN8 25775268
    189084 4y4o:2F (2.3) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    189085 4y4o:2F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 25775268
    189086 4y4o:2F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 25775268
    189087 4y4o:2F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 25775268
    189088 4y4o:2F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 25775268
    189089 4y4o:2G (2.3) BS01 rna ? GO:0000049 ... Q5SHQ0 25775268
    189090 4y4o:2G (2.3) BS02 rna ? GO:0000049 ... Q5SHQ0 25775268
    189091 4y4o:2G (2.3) BS03 MG ? GO:0000049 ... Q5SHQ0 25775268
    189092 4y4o:2G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 25775268
    189093 4y4o:2H (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189094 4y4o:2I (2.3) BS01 rna ? GO:0003735 ... Q5SLQ1 25775268
    189095 4y4o:2N (2.3) BS01 rna ? GO:0003729 ... P60488 25775268
    189096 4y4o:2O (2.3) BS01 rna ? GO:0003735 ... Q5SHP8 25775268
    189097 4y4o:2O (2.3) BS02 rna ? GO:0003735 ... Q5SHP8 25775268
    189098 4y4o:2P (2.3) BS01 rna ? GO:0003735 ... Q5SHQ7 25775268
    189099 4y4o:2Q (2.3) BS01 rna ? GO:0000049 ... P60489 25775268
    189100 4y4o:2Q (2.3) BS02 rna ? GO:0000049 ... P60489 25775268
    189101 4y4o:2Q (2.3) BS03 MG ? GO:0000049 ... P60489 25775268
    189102 4y4o:2Q (2.3) BS04 MG ? GO:0000049 ... P60489 25775268
    189103 4y4o:2R (2.3) BS01 rna ? GO:0003735 ... Q9Z9H5 25775268
    189104 4y4o:2R (2.3) BS02 MG ? GO:0003735 ... Q9Z9H5 25775268
    189105 4y4o:2S (2.3) BS01 rna ? GO:0003735 ... Q5SHQ4 25775268
    189106 4y4o:2S (2.3) BS02 rna ? GO:0003735 ... Q5SHQ4 25775268
    189107 4y4o:2T (2.3) BS01 rna ? GO:0003735 ... P60490 25775268
    189108 4y4o:2T (2.3) BS02 rna ? GO:0003735 ... P60490 25775268
    189109 4y4o:2U (2.3) BS01 rna ? GO:0000027 ... P60491 25775268
    189110 4y4o:2U (2.3) BS02 MG ? GO:0000027 ... P60491 25775268
    189111 4y4o:2V (2.3) BS01 rna ? GO:0003723 ... P60492 25775268
    189112 4y4o:2V (2.3) BS02 MG ? GO:0003723 ... P60492 25775268
    189113 4y4o:2V (2.3) BS03 MG ? GO:0003723 ... P60492 25775268
    189114 4y4o:2W (2.3) BS01 rna ? GO:0003735 ... Q5SHP3 25775268
    189115 4y4o:2W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 25775268
    189116 4y4o:2W (2.3) BS03 MG ? GO:0003735 ... Q5SHP3 25775268
    189117 4y4o:2X (2.3) BS01 rna ? GO:0000027 ... Q5SHP0 25775268
    189118 4y4o:2Y (2.3) BS01 rna ? GO:0003723 ... Q5SHP9 25775268
    189119 4y4o:2Y (2.3) BS02 ZN ? GO:0003723 ... Q5SHP9 25775268
    189120 4y4o:2Z (2.3) BS01 rna ? GO:0003723 ... Q5SHZ1 25775268
    189121 4y4o:2Z (2.3) BS02 rna ? GO:0003723 ... Q5SHZ1 25775268
    189122 4y4o:2b (2.3) BS01 rna ? GO:0003735 ... P80371 25775268
    189123 4y4o:2c (2.3) BS01 rna ? GO:0003676 ... P80372 25775268
    189124 4y4o:2d (2.3) BS01 rna ? GO:0003723 ... P80373 25775268
    189125 4y4o:2d (2.3) BS02 SF4 ? GO:0003723 ... P80373 25775268
    189126 4y4o:2e (2.3) BS01 rna ? GO:0003723 ... Q5SHQ5 25775268
    189127 4y4o:2e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 25775268
    189128 4y4o:2f (2.3) BS01 rna ? GO:0003735 ... Q5SLP8 25775268
    189129 4y4o:2f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 25775268
    189130 4y4o:2g (2.3) BS01 rna ? GO:0000028 ... P17291 25775268
    189131 4y4o:2h (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189132 4y4o:2i (2.3) BS01 rna ? GO:0000049 ... P80374 25775268
    189133 4y4o:2j (2.3) BS01 rna ? GO:0000049 ... Q5SHN7 25775268
    189134 4y4o:2j (2.3) BS02 MG ? GO:0000049 ... Q5SHN7 25775268
    189135 4y4o:2k (2.3) BS01 rna ? GO:0003735 ... P80376 25775268
    189136 4y4o:2k (2.3) BS02 MG ? GO:0003735 ... P80376 25775268
    189137 4y4o:2l (2.3) BS01 rna ? GO:0000049 ... Q5SHN3 25775268
    189138 4y4o:2l (2.3) BS02 MG ? GO:0000049 ... Q5SHN3 25775268
    189139 4y4o:2m (2.3) BS01 rna ? GO:0000049 ... P80377 25775268
    189140 4y4o:2n (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189141 4y4o:2n (2.3) BS02 ZN N/A GO:0003735 ... N/A 25775268
    189142 4y4o:2o (2.3) BS01 rna ? GO:0003735 ... Q5SJ76 25775268
    189143 4y4o:2o (2.3) BS02 rna ? GO:0003735 ... Q5SJ76 25775268
    189144 4y4o:2p (2.3) BS01 rna ? GO:0003735 ... Q5SJH3 25775268
    189145 4y4o:2q (2.3) BS01 rna N/A GO:0003735 ... N/A 25775268
    189146 4y4o:2r (2.3) BS01 rna ? GO:0003735 ... Q5SLQ0 25775268
    189147 4y4o:2s (2.3) BS01 rna ? GO:0000028 ... Q5SHP2 25775268
    189148 4y4o:2t (2.3) BS01 rna ? GO:0003723 ... P80380 25775268
    189149 4y4o:2t (2.3) BS02 MG ? GO:0003723 ... P80380 25775268
    189150 4y4o:2y (2.3) BS01 rna ? GO:0005515 ... P0AD49 25775268
    189151 4y4p:10 (2.5) BS01 rna ? GO:0003735 ... P60493 25775268
    189152 4y4p:10 (2.5) BS02 rna ? GO:0003735 ... P60493 25775268
    189153 4y4p:10 (2.5) BS03 MG ? GO:0003735 ... P60493 25775268
    189154 4y4p:10 (2.5) BS04 MG ? GO:0003735 ... P60493 25775268
    189155 4y4p:10 (2.5) BS05 MG ? GO:0003735 ... P60493 25775268
    189156 4y4p:11 (2.5) BS01 rna ? GO:0003735 ... P60494 25775268
    189157 4y4p:11 (2.5) BS02 MG ? GO:0003735 ... P60494 25775268
    189158 4y4p:12 (2.5) BS01 rna ? GO:0003735 ... Q5SHP6 25775268
    189159 4y4p:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 25775268
    189160 4y4p:13 (2.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25775268
    189161 4y4p:13 (2.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25775268
    189162 4y4p:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 25775268
    189163 4y4p:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 25775268
    189164 4y4p:13 (2.5) BS05 MG ? GO:0003735 ... Q5SHQ6 25775268
    189165 4y4p:14 (2.5) BS01 rna ? GO:0003735 ... Q5SJE1 25775268
    189166 4y4p:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 25775268
    189167 4y4p:15 (2.5) BS01 rna ? GO:0003735 ... P80339 25775268
    189168 4y4p:15 (2.5) BS02 ZN ? GO:0003735 ... P80339 25775268
    189169 4y4p:16 (2.5) BS01 rna ? GO:0000049 ... P35871 25775268
    189170 4y4p:16 (2.5) BS02 MG ? GO:0000049 ... P35871 25775268
    189171 4y4p:16 (2.5) BS03 ZN ? GO:0000049 ... P35871 25775268
    189172 4y4p:16 (2.5) BS04 MG ? GO:0000049 ... P35871 25775268
    189173 4y4p:17 (2.5) BS01 rna ? GO:0003735 ... P80340 25775268
    189174 4y4p:17 (2.5) BS02 MG ? GO:0003735 ... P80340 25775268
    189175 4y4p:17 (2.5) BS03 MG ? GO:0003735 ... P80340 25775268
    189176 4y4p:18 (2.5) BS01 rna ? GO:0003735 ... Q5SKU1 25775268
    189177 4y4p:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 25775268
    189178 4y4p:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 25775268
    189179 4y4p:18 (2.5) BS04 MG ? GO:0003735 ... Q5SKU1 25775268
    189180 4y4p:19 (2.5) BS01 rna ? GO:0003735 ... Q5SHR2 25775268
    189181 4y4p:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 25775268
    189182 4y4p:1D (2.5) BS01 rna ? GO:0002181 ... P60405 25775268
    189183 4y4p:1D (2.5) BS02 rna ? GO:0002181 ... P60405 25775268
    189184 4y4p:1D (2.5) BS03 MG ? GO:0002181 ... P60405 25775268
    189185 4y4p:1D (2.5) BS04 MG ? GO:0002181 ... P60405 25775268
    189186 4y4p:1D (2.5) BS05 MG ? GO:0002181 ... P60405 25775268
    189187 4y4p:1D (2.5) BS06 MG ? GO:0002181 ... P60405 25775268
    189188 4y4p:1D (2.5) BS07 MG ? GO:0002181 ... P60405 25775268
    189189 4y4p:1D (2.5) BS08 MG ? GO:0002181 ... P60405 25775268
    189190 4y4p:1D (2.5) BS09 MG ? GO:0002181 ... P60405 25775268
    189191 4y4p:1D (2.5) BS10 MG ? GO:0002181 ... P60405 25775268
    189192 4y4p:1D (2.5) BS11 MG ? GO:0002181 ... P60405 25775268
    189193 4y4p:1D (2.5) BS12 MG ? GO:0002181 ... P60405 25775268
    189194 4y4p:1E (2.5) BS01 rna ? GO:0003735 ... Q5SHN8 25775268
    189195 4y4p:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 25775268
    189196 4y4p:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 25775268
    189197 4y4p:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 25775268
    189198 4y4p:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 25775268
    189199 4y4p:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 25775268
    189200 4y4p:1F (2.5) BS01 rna ? GO:0003735 ... Q5SHN9 25775268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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