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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    188601 4y10:E (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 29449928
    188602 4y11:E (1.3) BS01 CA 3.4.21.4 GO:0004175 ... P00760 29449928
    188603 4y16:C (2.6) BS01 48G ? GO:0003674 ... A0A0B4J1J9
    P01848    		 26018083 PDBbind: -logKd/Ki=7.43, Kd=37.1nM
    188604 4y18:A (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188605 4y18:A (3.5) BS02 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188606 4y18:B (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188607 4y18:B (3.5) BS02 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188608 4y18:C (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188609 4y18:D (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188610 4y18:E (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188611 4y18:F (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188612 4y18:G (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188613 4y18:G (3.5) BS02 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188614 4y18:H (3.5) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 26778126
    188615 4y19:A (2.5) BS01 peptide ? GO:0006955 ... P01903 26437244
    188616 4y19:B (2.5) BS01 peptide ? GO:0006955 ... P01911 26437244
    188617 4y1a:A (4.0) BS01 peptide ? GO:0006955 ... P01903 26437244
    188618 4y1a:B (4.0) BS01 peptide ? GO:0006955 ... P01911 26437244
    188619 4y1u:A (1.762) BS01 MAG ? GO:0002317 ... P09382 N/A
    188620 4y1u:A (1.762) BS02 GAL ? GO:0002317 ... P09382 N/A
    188621 4y1u:B (1.762) BS01 MAG ? GO:0002317 ... P09382 N/A
    188622 4y1u:B (1.762) BS02 GAL ? GO:0002317 ... P09382 N/A
    188623 4y1v:A (2.32) BS01 MAG ? GO:0002317 ... P09382 N/A
    188624 4y1v:A (2.32) BS02 GAL ? GO:0002317 ... P09382 N/A
    188625 4y1v:B (2.32) BS01 MAG ? GO:0002317 ... P09382 N/A
    188626 4y1v:B (2.32) BS02 GAL ? GO:0002317 ... P09382 N/A
    188627 4y1x:A (2.45) BS01 6S2 ? GO:0002317 ... P09382 N/A
    188628 4y1x:A (2.45) BS02 GAL ? GO:0002317 ... P09382 N/A
    188629 4y1x:B (2.45) BS01 6S2 ? GO:0002317 ... P09382 N/A
    188630 4y1x:B (2.45) BS02 GAL ? GO:0002317 ... P09382 N/A
    188631 4y1y:A (1.86) BS01 6S2 ? GO:0002317 ... P09382 N/A
    188632 4y1y:A (1.86) BS02 GAL ? GO:0002317 ... P09382 N/A
    188633 4y1y:B (1.86) BS01 6S2 ? GO:0002317 ... P09382 N/A
    188634 4y1y:B (1.86) BS02 GAL ? GO:0002317 ... P09382 N/A
    188635 4y1z:A (2.23) BS01 6C2 ? GO:0002317 ... P09382 N/A
    188636 4y1z:A (2.23) BS02 GAL ? GO:0002317 ... P09382 N/A
    188637 4y1z:B (2.23) BS01 6C2 ? GO:0002317 ... P09382 N/A
    188638 4y1z:B (2.23) BS02 GAL ? GO:0002317 ... P09382 N/A
    188639 4y20:A (2.204) BS01 GLC ? GO:0002317 ... P09382 N/A
    188640 4y20:A (2.204) BS02 GAL ? GO:0002317 ... P09382 N/A
    188641 4y20:B (2.204) BS01 GLC ? GO:0002317 ... P09382 N/A
    188642 4y20:B (2.204) BS02 GAL ? GO:0002317 ... P09382 N/A
    188643 4y22:B (2.5) BS01 MAG ? GO:0002317 ... P09382 N/A
    188644 4y22:B (2.5) BS02 SGA ? GO:0002317 ... P09382 N/A
    188645 4y24:A (2.32) BS01 TD2 ? GO:0002317 ... P09382 27416897 MOAD: Kd=0.22uM
    PDBbind: -logKd/Ki=6.66, Kd=0.22uM
    188646 4y24:B (2.32) BS01 TD2 ? GO:0002317 ... P09382 27416897 MOAD: Kd=0.22uM
    188647 4y26:A (2.611) BS01 6S2 ? GO:0005515 ... P47929 N/A
    188648 4y26:A (2.611) BS02 GAL ? GO:0005515 ... P47929 N/A
    188649 4y26:B (2.611) BS01 6S2 ? GO:0005515 ... P47929 N/A
    188650 4y26:B (2.611) BS02 GAL ? GO:0005515 ... P47929 N/A
    188651 4y28:1 (2.8) BS01 CLA ? GO:0009416 ... E1C9L2 26076232
    188652 4y28:1 (2.8) BS02 CLA ? GO:0009416 ... E1C9L2 26076232
    188653 4y28:1 (2.8) BS03 CLA ? GO:0009416 ... E1C9L2 26076232
    188654 4y28:1 (2.8) BS04 CLA ? GO:0009416 ... E1C9L2 26076232
    188655 4y28:1 (2.8) BS05 CLA ? GO:0009416 ... E1C9L2 26076232
    188656 4y28:1 (2.8) BS06 CLA ? GO:0009416 ... E1C9L2 26076232
    188657 4y28:1 (2.8) BS07 CLA ? GO:0009416 ... E1C9L2 26076232
    188658 4y28:1 (2.8) BS08 CLA ? GO:0009416 ... E1C9L2 26076232
    188659 4y28:1 (2.8) BS09 CHL ? GO:0009416 ... E1C9L2 26076232
    188660 4y28:1 (2.8) BS10 CHL ? GO:0009416 ... E1C9L2 26076232
    188661 4y28:1 (2.8) BS11 CLA ? GO:0009416 ... E1C9L2 26076232
    188662 4y28:1 (2.8) BS12 CLA ? GO:0009416 ... E1C9L2 26076232
    188663 4y28:1 (2.8) BS13 CLA ? GO:0009416 ... E1C9L2 26076232
    188664 4y28:1 (2.8) BS14 CLA ? GO:0009416 ... E1C9L2 26076232
    188665 4y28:2 (2.8) BS01 CLA ? GO:0009416 ... Q41038 26076232
    188666 4y28:2 (2.8) BS02 CLA ? GO:0009416 ... Q41038 26076232
    188667 4y28:2 (2.8) BS03 CLA ? GO:0009416 ... Q41038 26076232
    188668 4y28:2 (2.8) BS04 CLA ? GO:0009416 ... Q41038 26076232
    188669 4y28:2 (2.8) BS05 CLA ? GO:0009416 ... Q41038 26076232
    188670 4y28:2 (2.8) BS06 CLA ? GO:0009416 ... Q41038 26076232
    188671 4y28:2 (2.8) BS07 CLA ? GO:0009416 ... Q41038 26076232
    188672 4y28:2 (2.8) BS08 CLA ? GO:0009416 ... Q41038 26076232
    188673 4y28:2 (2.8) BS09 CHL ? GO:0009416 ... Q41038 26076232
    188674 4y28:2 (2.8) BS10 CHL ? GO:0009416 ... Q41038 26076232
    188675 4y28:2 (2.8) BS11 CLA ? GO:0009416 ... Q41038 26076232
    188676 4y28:2 (2.8) BS12 CHL ? GO:0009416 ... Q41038 26076232
    188677 4y28:2 (2.8) BS13 CLA ? GO:0009416 ... Q41038 26076232
    188678 4y28:2 (2.8) BS14 CLA ? GO:0009416 ... Q41038 26076232
    188679 4y28:2 (2.8) BS15 CLA ? GO:0009416 ... Q41038 26076232
    188680 4y28:3 (2.8) BS01 CLA ? GO:0009416 ... Q32904 26076232
    188681 4y28:3 (2.8) BS02 CLA ? GO:0009416 ... Q32904 26076232
    188682 4y28:3 (2.8) BS03 CLA ? GO:0009416 ... Q32904 26076232
    188683 4y28:3 (2.8) BS04 CLA ? GO:0009416 ... Q32904 26076232
    188684 4y28:3 (2.8) BS05 CLA ? GO:0009416 ... Q32904 26076232
    188685 4y28:3 (2.8) BS06 CLA ? GO:0009416 ... Q32904 26076232
    188686 4y28:3 (2.8) BS07 CLA ? GO:0009416 ... Q32904 26076232
    188687 4y28:3 (2.8) BS08 CLA ? GO:0009416 ... Q32904 26076232
    188688 4y28:3 (2.8) BS09 CLA ? GO:0009416 ... Q32904 26076232
    188689 4y28:3 (2.8) BS10 CLA ? GO:0009416 ... Q32904 26076232
    188690 4y28:3 (2.8) BS11 CLA ? GO:0009416 ... Q32904 26076232
    188691 4y28:3 (2.8) BS12 CLA ? GO:0009416 ... Q32904 26076232
    188692 4y28:3 (2.8) BS13 CHL ? GO:0009416 ... Q32904 26076232
    188693 4y28:3 (2.8) BS14 CLA ? GO:0009416 ... Q32904 26076232
    188694 4y28:3 (2.8) BS15 CLA ? GO:0009416 ... Q32904 26076232
    188695 4y28:3 (2.8) BS16 CLA ? GO:0009416 ... Q32904 26076232
    188696 4y28:3 (2.8) BS17 CLA ? GO:0009416 ... Q32904 26076232
    188697 4y28:4 (2.8) BS01 CLA ? GO:0009416 ... Q9SQL2 26076232
    188698 4y28:4 (2.8) BS02 CLA ? GO:0009416 ... Q9SQL2 26076232
    188699 4y28:4 (2.8) BS03 CLA ? GO:0009416 ... Q9SQL2 26076232
    188700 4y28:4 (2.8) BS04 CLA ? GO:0009416 ... Q9SQL2 26076232
    188701 4y28:4 (2.8) BS05 CLA ? GO:0009416 ... Q9SQL2 26076232
    188702 4y28:4 (2.8) BS06 CLA ? GO:0009416 ... Q9SQL2 26076232
    188703 4y28:4 (2.8) BS07 CLA ? GO:0009416 ... Q9SQL2 26076232
    188704 4y28:4 (2.8) BS08 CLA ? GO:0009416 ... Q9SQL2 26076232
    188705 4y28:4 (2.8) BS09 CLA ? GO:0009416 ... Q9SQL2 26076232
    188706 4y28:4 (2.8) BS10 CHL ? GO:0009416 ... Q9SQL2 26076232
    188707 4y28:4 (2.8) BS11 CHL ? GO:0009416 ... Q9SQL2 26076232
    188708 4y28:4 (2.8) BS12 CLA ? GO:0009416 ... Q9SQL2 26076232
    188709 4y28:4 (2.8) BS13 CHL ? GO:0009416 ... Q9SQL2 26076232
    188710 4y28:4 (2.8) BS14 CLA ? GO:0009416 ... Q9SQL2 26076232
    188711 4y28:4 (2.8) BS15 CLA ? GO:0009416 ... Q9SQL2 26076232
    188712 4y28:4 (2.8) BS16 CHL ? GO:0009416 ... Q9SQL2 26076232
    188713 4y28:A (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... P05310 26076232
    188714 4y28:A (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188715 4y28:A (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188716 4y28:A (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188717 4y28:A (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... P05310 26076232
    188718 4y28:A (2.8) BS06 PQN 1.97.1.12 GO:0000287 ... P05310 26076232
    188719 4y28:A (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188720 4y28:A (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188721 4y28:A (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188722 4y28:A (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188723 4y28:A (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188724 4y28:A (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188725 4y28:A (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188726 4y28:A (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188727 4y28:A (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188728 4y28:A (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188729 4y28:A (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188730 4y28:A (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188731 4y28:A (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188732 4y28:A (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188733 4y28:A (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188734 4y28:A (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188735 4y28:A (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188736 4y28:A (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188737 4y28:A (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188738 4y28:A (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188739 4y28:A (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188740 4y28:A (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188741 4y28:A (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188742 4y28:A (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188743 4y28:A (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188744 4y28:A (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188745 4y28:A (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188746 4y28:A (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188747 4y28:A (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188748 4y28:A (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188749 4y28:A (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188750 4y28:A (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188751 4y28:A (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188752 4y28:A (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188753 4y28:A (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188754 4y28:A (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188755 4y28:A (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188756 4y28:A (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188757 4y28:A (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188758 4y28:A (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188759 4y28:A (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188760 4y28:A (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188761 4y28:A (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188762 4y28:A (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188763 4y28:A (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188764 4y28:A (2.8) BS52 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    188765 4y28:B (2.8) BS01 peptide 1.97.1.12 GO:0000287 ... P05311 26076232
    188766 4y28:B (2.8) BS02 CL0 1.97.1.12 GO:0000287 ... P05311 26076232
    188767 4y28:B (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188768 4y28:B (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188769 4y28:B (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... P05311 26076232
    188770 4y28:B (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188771 4y28:B (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188772 4y28:B (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188773 4y28:B (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188774 4y28:B (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188775 4y28:B (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188776 4y28:B (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188777 4y28:B (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188778 4y28:B (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188779 4y28:B (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188780 4y28:B (2.8) BS16 PQN 1.97.1.12 GO:0000287 ... P05311 26076232
    188781 4y28:B (2.8) BS17 CA 1.97.1.12 GO:0000287 ... P05311 26076232
    188782 4y28:B (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188783 4y28:B (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188784 4y28:B (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188785 4y28:B (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188786 4y28:B (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188787 4y28:B (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188788 4y28:B (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188789 4y28:B (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188790 4y28:B (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188791 4y28:B (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188792 4y28:B (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188793 4y28:B (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188794 4y28:B (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188795 4y28:B (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188796 4y28:B (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188797 4y28:B (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188798 4y28:B (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188799 4y28:B (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    188800 4y28:B (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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