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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    186801 4xcz:A (1.5) BS02 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186802 4xcz:A (1.5) BS03 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186803 4xd0:A (1.8) BS01 T3F 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186804 4xd0:A (1.8) BS02 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186805 4xd0:A (1.8) BS03 T3F 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186806 4xd1:A (1.5) BS01 FON 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186807 4xd1:A (1.5) BS02 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    186808 4xd2:A (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    186809 4xd2:A (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    186810 4xd2:A (1.1) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    186811 4xd2:B (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    186812 4xd2:B (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    186813 4xd2:B (1.1) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 N/A
    186814 4xd7:F (3.9) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 26032434
    186815 4xda:A (1.75) BS01 RIB 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186816 4xda:A (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186817 4xda:B (1.75) BS01 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186818 4xda:B (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186819 4xda:C (1.75) BS01 RIB 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186820 4xda:C (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186821 4xda:D (1.75) BS01 RIB 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186822 4xda:D (1.75) BS02 ADP 2.7.1.15 GO:0004747 ... A0A0H2UL04 25408351
    186823 4xdg:A (1.5) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    186824 4xdg:A (1.5) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    186825 4xdg:A (1.5) BS03 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    186826 4xdg:A (1.5) BS04 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    186827 4xdg:B (1.5) BS01 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    186828 4xdg:B (1.5) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    186829 4xdg:B (1.5) BS03 3ZU 1.10.5.1 GO:0001512 ... P16083 28146103
    186830 4xdg:B (1.5) BS04 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    186831 4xdh:A (1.9) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    186832 4xdh:A (1.9) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    186833 4xdh:A (1.9) BS03 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    186834 4xdh:A (1.9) BS04 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    186835 4xdh:B (1.9) BS01 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    186836 4xdh:B (1.9) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 28146103
    186837 4xdh:B (1.9) BS03 FAD 1.10.5.1 GO:0001512 ... P16083 28146103
    186838 4xdh:B (1.9) BS04 3ZV 1.10.5.1 GO:0001512 ... P16083 28146103
    186839 4xdi:A (1.893) BS01 HEM ? GO:0005737 ... A8JAR4 26057801
    186840 4xdi:B (1.893) BS01 HEM ? GO:0005737 ... A8JAR4 26057801
    186841 4xdj:A (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    186842 4xdj:A (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    186843 4xdj:A (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    186844 4xdj:B (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    186845 4xdj:B (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    186846 4xdj:B (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    186847 4xdj:C (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    186848 4xdj:C (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    186849 4xdj:C (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    186850 4xdj:D (3.8) BS01 K ? GO:0005267 ... P57789 25766236
    186851 4xdj:D (3.8) BS02 K ? GO:0005267 ... P57789 25766236
    186852 4xdj:D (3.8) BS03 K ? GO:0005267 ... P57789 25766236
    186853 4xdk:A (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    186854 4xdk:A (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    186855 4xdk:A (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    186856 4xdk:A (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    186857 4xdk:A (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    186858 4xdk:A (3.6) BS06 405 ? GO:0005267 ... P57789 25766236
    186859 4xdk:A (3.6) BS07 408 ? GO:0005267 ... P57789 25766236
    186860 4xdk:B (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    186861 4xdk:B (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    186862 4xdk:B (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    186863 4xdk:B (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    186864 4xdk:B (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    186865 4xdk:B (3.6) BS06 405 ? GO:0005267 ... P57789 25766236
    186866 4xdk:B (3.6) BS07 408 ? GO:0005267 ... P57789 25766236
    186867 4xdk:C (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    186868 4xdk:C (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    186869 4xdk:C (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    186870 4xdk:C (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    186871 4xdk:C (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    186872 4xdk:C (3.6) BS06 408 ? GO:0005267 ... P57789 25766236
    186873 4xdk:C (3.6) BS07 405 ? GO:0005267 ... P57789 25766236
    186874 4xdk:D (3.6) BS01 K ? GO:0005267 ... P57789 25766236
    186875 4xdk:D (3.6) BS02 K ? GO:0005267 ... P57789 25766236
    186876 4xdk:D (3.6) BS03 K ? GO:0005267 ... P57789 25766236
    186877 4xdk:D (3.6) BS04 408 ? GO:0005267 ... P57789 25766236
    186878 4xdk:D (3.6) BS05 405 ? GO:0005267 ... P57789 25766236
    186879 4xdk:D (3.6) BS06 408 ? GO:0005267 ... P57789 25766236
    186880 4xdk:D (3.6) BS07 405 ? GO:0005267 ... P57789 25766236
    186881 4xdl:A (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    186882 4xdl:A (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    186883 4xdl:A (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    186884 4xdl:B (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    186885 4xdl:B (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    186886 4xdl:B (3.5) BS03 40D ? GO:0005267 ... P57789 25766236
    186887 4xdl:B (3.5) BS04 K ? GO:0005267 ... P57789 25766236
    186888 4xdl:B (3.5) BS05 40D ? GO:0005267 ... P57789 25766236
    186889 4xdl:C (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    186890 4xdl:C (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    186891 4xdl:C (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    186892 4xdl:D (3.5) BS01 K ? GO:0005267 ... P57789 25766236
    186893 4xdl:D (3.5) BS02 K ? GO:0005267 ... P57789 25766236
    186894 4xdl:D (3.5) BS03 K ? GO:0005267 ... P57789 25766236
    186895 4xdr:A (1.4) BS01 ADN 2.7.1.180 GO:0005886 ... O83774 25944861
    186896 4xdt:A (1.452) BS01 FAD 2.7.1.180 GO:0005886 ... O83774 25944861
    186897 4xdt:A (1.452) BS02 MG 2.7.1.180 GO:0005886 ... O83774 25944861
    186898 4xdu:A (1.35) BS01 MG 2.7.1.180 GO:0005886 ... O83774 25944861
    186899 4xdu:A (1.35) BS02 ADP 2.7.1.180 GO:0005886 ... O83774 25944861
    186900 4xe1:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25733161
    186901 4xe1:A (1.8) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25733161
    186902 4xe1:A (1.8) BS03 IL5 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25733161 MOAD: Ki=77.3nM
    PDBbind: -logKd/Ki=7.11, Ki=77.3nM
    186903 4xe5:A (3.901) BS01 MG 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    186904 4xe5:A (3.901) BS02 MG 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    186905 4xe5:A (3.901) BS03 OBN 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    186906 4xe5:A (3.901) BS04 CLR 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    186907 4xe5:A (3.901) BS05 CLR 7.2.2.13 GO:0000166 ... Q08DA1 27050261
    186908 4xe5:B (3.901) BS01 CLR ? GO:0001671 ... G3MWR4 27050261
    186909 4xe5:G (3.901) BS01 CLR ? GO:0006811 ... Q04645 27050261
    186910 4xe6:X (2.692) BS01 06U 1.5.1.3 GO:0004146 ... P0A017 N/A BindingDB: IC50=19nM, Ki=2.8nM
    186911 4xe6:X (2.692) BS02 NDP 1.5.1.3 GO:0004146 ... P0A017 N/A
    186912 4xe9:A (1.84) BS01 OPX 3.2.1.18 GO:0004308 ... Q54727 N/A
    186913 4xec:X (2.692) BS01 06U 1.5.1.3 GO:0004146 ... P0A017 26098608 BindingDB: IC50=19nM, Ki=2.8nM
    186914 4xec:X (2.692) BS02 NDP 1.5.1.3 GO:0004146 ... P0A017 26098608
    186915 4xee:A (2.9) BS01 peptide 3.2.1.17 GO:0003796 ... P00720
    P20789    		 26205105
    186916 4xef:A (2.5) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    186917 4xef:A (2.5) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    186918 4xef:D (2.5) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    186919 4xef:D (2.5) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 26866573
    186920 4xej:AL02 (3.8) BS01 rna ? GO:0002181 ... Q72I07 25652826
    186921 4xej:AL03 (3.8) BS01 rna ? GO:0003735 ... Q72I04 25652826
    186922 4xej:AL04 (3.8) BS01 rna ? GO:0003735 ... Q72I05 25652826
    186923 4xej:AL05 (3.8) BS01 rna ? GO:0000049 ... Q72I16 25652826
    186924 4xej:AL05 (3.8) BS02 rna ? GO:0000049 ... Q72I16 25652826
    186925 4xej:AL06 (3.8) BS01 rna ? GO:0003735 ... Q72I19 25652826
    186926 4xej:AL09 (3.8) BS01 rna ? GO:0003735 ... Q72GV5 25652826
    186927 4xej:AL11 (3.8) BS01 rna ? GO:0003735 ... P62442 25652826
    186928 4xej:AL13 (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25652826
    186929 4xej:AL14 (3.8) BS01 rna ? GO:0003735 ... Q72I14 25652826
    186930 4xej:AL14 (3.8) BS02 rna ? GO:0003735 ... Q72I14 25652826
    186931 4xej:AL15 (3.8) BS01 rna ? GO:0003735 ... Q72I23 25652826
    186932 4xej:AL16 (3.8) BS01 rna ? GO:0000049 ... Q72I11 25652826
    186933 4xej:AL16 (3.8) BS02 rna ? GO:0000049 ... Q72I11 25652826
    186934 4xej:AL17 (3.8) BS01 rna ? GO:0003735 ... Q72I33 25652826
    186935 4xej:AL18 (3.8) BS01 rna ? GO:0003735 ... Q72I20 25652826
    186936 4xej:AL18 (3.8) BS02 rna ? GO:0003735 ... Q72I20 25652826
    186937 4xej:AL19 (3.8) BS01 rna ? GO:0003735 ... Q72JU9 25652826
    186938 4xej:AL19 (3.8) BS02 rna ? GO:0003735 ... Q72JU9 25652826
    186939 4xej:AL20 (3.8) BS01 rna ? GO:0000027 ... Q72L76 25652826
    186940 4xej:AL21 (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25652826
    186941 4xej:AL22 (3.8) BS01 rna ? GO:0003735 ... Q72I09 25652826
    186942 4xej:AL23 (3.8) BS01 rna ? GO:0000027 ... Q72I06 25652826
    186943 4xej:AL24 (3.8) BS01 rna ? GO:0003723 ... Q72I15 25652826
    186944 4xej:AL25 (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25652826
    186945 4xej:AL25 (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25652826
    186946 4xej:AL27 (3.8) BS01 rna ? GO:0003735 ... Q72HR3 25652826
    186947 4xej:AL27 (3.8) BS02 rna ? GO:0003735 ... Q72HR3 25652826
    186948 4xej:AL28 (3.8) BS01 rna ? GO:0005840 ... Q72G84 25652826
    186949 4xej:AL29 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25652826
    186950 4xej:AL30 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25652826
    186951 4xej:AL30 (3.8) BS02 rna ? GO:0003735 ... Q72I22 25652826
    186952 4xej:AL32 (3.8) BS01 rna ? GO:0003735 ... P62652 25652826
    186953 4xej:AL33 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25652826
    186954 4xej:AL34 (3.8) BS01 rna ? GO:0003735 ... P80340 25652826
    186955 4xej:AL35 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25652826
    186956 4xej:AS02 (3.8) BS01 rna ? GO:0003735 ... P62662 25652826
    186957 4xej:AS04 (3.8) BS01 rna ? GO:0003723 ... P62664 25652826
    186958 4xej:AS04 (3.8) BS02 ZN ? GO:0003723 ... P62664 25652826
    186959 4xej:AS05 (3.8) BS01 rna ? GO:0003723 ... P62665 25652826
    186960 4xej:AS06 (3.8) BS01 rna ? GO:0003735 ... P62666 25652826
    186961 4xej:AS07 (3.8) BS01 rna ? GO:0000028 ... P62667 25652826
    186962 4xej:AS08 (3.8) BS01 rna ? GO:0003735 ... P62668 25652826
    186963 4xej:AS09 (3.8) BS01 rna ? GO:0000049 ... P62669 25652826
    186964 4xej:AS09 (3.8) BS02 rna ? GO:0000049 ... P62669 25652826
    186965 4xej:AS10 (3.8) BS01 rna ? GO:0000049 ... P62653 25652826
    186966 4xej:AS10 (3.8) BS02 rna ? GO:0000049 ... P62653 25652826
    186967 4xej:AS11 (3.8) BS01 rna ? GO:0003735 ... P62654 25652826
    186968 4xej:AS12 (3.8) BS01 rna ? GO:0000049 ... P61941 25652826
    186969 4xej:AS13 (3.8) BS01 rna ? GO:0000049 ... P62655 25652826
    186970 4xej:AS13 (3.8) BS02 rna ? GO:0000049 ... P62655 25652826
    186971 4xej:AS14 (3.8) BS01 rna ? GO:0003735 ... P62656 25652826
    186972 4xej:AS14 (3.8) BS02 ZN ? GO:0003735 ... P62656 25652826
    186973 4xej:AS15 (3.8) BS01 rna ? GO:0003735 ... P62657 25652826
    186974 4xej:AS15 (3.8) BS02 rna ? GO:0003735 ... P62657 25652826
    186975 4xej:AS16 (3.8) BS01 rna ? GO:0003735 ... P62238 25652826
    186976 4xej:AS17 (3.8) BS01 rna ? GO:0003735 ... P62658 25652826
    186977 4xej:AS18 (3.8) BS01 rna ? GO:0003735 ... P62659 25652826
    186978 4xej:AS19 (3.8) BS01 rna ? GO:0003723 ... P62660 25652826
    186979 4xej:AS20 (3.8) BS01 rna ? GO:0003723 ... P62661 25652826
    186980 4xej:BL02 (3.8) BS01 rna ? GO:0002181 ... Q72I07 25652826
    186981 4xej:BL03 (3.8) BS01 rna ? GO:0003735 ... Q72I04 25652826
    186982 4xej:BL04 (3.8) BS01 rna ? GO:0003735 ... Q72I05 25652826
    186983 4xej:BL05 (3.8) BS01 rna ? GO:0000049 ... Q72I16 25652826
    186984 4xej:BL05 (3.8) BS02 rna ? GO:0000049 ... Q72I16 25652826
    186985 4xej:BL06 (3.8) BS01 rna ? GO:0003735 ... Q72I19 25652826
    186986 4xej:BL09 (3.8) BS01 rna ? GO:0003735 ... Q72GV5 25652826
    186987 4xej:BL09 (3.8) BS02 rna ? GO:0003735 ... Q72GV5 25652826
    186988 4xej:BL11 (3.8) BS01 rna ? GO:0003735 ... P62442 25652826
    186989 4xej:BL13 (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25652826
    186990 4xej:BL14 (3.8) BS01 rna ? GO:0003735 ... Q72I14 25652826
    186991 4xej:BL14 (3.8) BS02 rna ? GO:0003735 ... Q72I14 25652826
    186992 4xej:BL15 (3.8) BS01 rna ? GO:0003735 ... Q72I23 25652826
    186993 4xej:BL16 (3.8) BS01 rna ? GO:0000049 ... Q72I11 25652826
    186994 4xej:BL16 (3.8) BS02 rna ? GO:0000049 ... Q72I11 25652826
    186995 4xej:BL17 (3.8) BS01 rna ? GO:0003735 ... Q72I33 25652826
    186996 4xej:BL18 (3.8) BS01 rna ? GO:0003735 ... Q72I20 25652826
    186997 4xej:BL18 (3.8) BS02 rna ? GO:0003735 ... Q72I20 25652826
    186998 4xej:BL19 (3.8) BS01 rna ? GO:0003735 ... Q72JU9 25652826
    186999 4xej:BL19 (3.8) BS02 rna ? GO:0003735 ... Q72JU9 25652826
    187000 4xej:BL20 (3.8) BS01 rna ? GO:0000027 ... Q72L76 25652826
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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