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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    186001 4wzo:45 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    186002 4wzo:45 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    186003 4wzo:49 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    186004 4wzo:49 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    186005 4wzo:49 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    186006 4wzo:4A (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    186007 4wzo:4E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    186008 4wzo:4E (3.3) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    186009 4wzo:4I (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    186010 4wzo:4I (3.3) BS02 rna ? GO:0000049 ... P80377 26037619
    186011 4wzo:4I (3.3) BS03 rna ? GO:0000049 ... P80377 26037619
    186012 4wzo:51 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186013 4wzo:52 (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    186014 4wzo:55 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    186015 4wzo:58 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    186016 4wzo:59 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186017 4wzo:5A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186018 4wzo:5A (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    186019 4wzo:5E (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    186020 4wzo:5I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186021 4wzo:5I (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    186022 4wzo:61 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    186023 4wzo:62 (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    186024 4wzo:62 (3.3) BS02 rna ? GO:0000028 ... P17291 26037619
    186025 4wzo:65 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    186026 4wzo:65 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    186027 4wzo:68 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    186028 4wzo:68 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    186029 4wzo:69 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    186030 4wzo:69 (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    186031 4wzo:6A (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    186032 4wzo:6A (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    186033 4wzo:6E (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    186034 4wzo:6E (3.3) BS02 rna ? GO:0000028 ... P17291 26037619
    186035 4wzo:6I (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    186036 4wzo:6I (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    186037 4wzo:71 (3.3) BS01 rna ? GO:0000049 ... P27150 26037619
    186038 4wzo:72 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186039 4wzo:75 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    186040 4wzo:75 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    186041 4wzo:78 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    186042 4wzo:7A (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    186043 4wzo:7E (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186044 4wzo:7I (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    186045 4wzo:82 (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    186046 4wzo:82 (3.3) BS02 rna ? GO:0000049 ... P80374 26037619
    186047 4wzo:85 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    186048 4wzo:88 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    186049 4wzo:88 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    186050 4wzo:88 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    186051 4wzo:88 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    186052 4wzo:8A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186053 4wzo:8E (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    186054 4wzo:8I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    186055 4wzo:95 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    186056 4wzo:98 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    186057 4wzo:9A (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    186058 4wzo:9I (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    186059 4wzo:A5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    186060 4wzo:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    186061 4wzo:A8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    186062 4wzo:AA (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    186063 4wzo:AI (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    186064 4wzo:B5 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    186065 4wzo:B8 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    186066 4wzo:B8 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    186067 4wzo:BA (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    186068 4wzo:BI (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    186069 4wzo:C5 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    186070 4wzo:C5 (3.3) BS02 MG ? GO:0003723 ... Q5SHP9 26037619
    186071 4wzo:C5 (3.3) BS03 ZN ? GO:0003723 ... Q5SHP9 26037619
    186072 4wzo:C8 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    186073 4wzo:D5 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    186074 4wzo:D8 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    186075 4wzo:E5 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    186076 4wzo:E5 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    186077 4wzo:E8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    186078 4wzo:F5 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    186079 4wzo:F5 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    186080 4wzo:F8 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    186081 4wzo:G5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    186082 4wzo:G8 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    186083 4wzo:G8 (3.3) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    186084 4wzo:H5 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    186085 4wzo:H5 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    186086 4wzo:H8 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    186087 4wzo:I5 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    186088 4wzo:I8 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    186089 4wzo:I8 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    186090 4wzo:J5 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    186091 4wzo:J8 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    186092 4wzo:J8 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    186093 4wzo:K8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    186094 4wzo:L5 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    186095 4wzo:L8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    186096 4wzo:L8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    186097 4wzo:M5 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    186098 4wzo:M8 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    186099 4wzo:N8 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    186100 4wzo:P8 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    186101 4wzo:Q8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    186102 4wzs:A (3.78) BS01 dna ? GO:0001046 ... Q8SQT6 26258880
    186103 4wzs:A (3.78) BS02 dna ? GO:0001046 ... Q8SQT6 26258880
    186104 4wzs:B (3.78) BS01 dna ? GO:0000122 ... M1K2J7 26258880
    186105 4wzs:B (3.78) BS02 dna ? GO:0000122 ... M1K2J7 26258880
    186106 4wzs:D (3.78) BS01 dna ? GO:0003677 ... Q8ST28 26258880
    186107 4wzs:D (3.78) BS02 dna ? GO:0003677 ... Q8ST28 26258880
    186108 4wzv:A (1.65) BS01 E40 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=0.43nM
    PDBbind: -logKd/Ki=9.37, IC50=0.43nM
    BindingDB: IC50=0.430000nM
    186109 4wzv:A (1.65) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 26263024
    186110 4wzv:A (1.65) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 26263024
    186111 4wzv:A (1.65) BS04 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    186112 4wzv:A (1.65) BS05 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    186113 4wzv:A (1.65) BS06 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    186114 4wzv:A (1.65) BS07 E40 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=0.43nM
    PDBbind: -logKd/Ki=9.37, IC50=0.43nM
    BindingDB: IC50=0.430000nM
    186115 4wzv:B (1.65) BS01 E40 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=0.43nM
    BindingDB: IC50=0.430000nM
    186116 4wzv:B (1.65) BS02 E40 3.4.24.35 GO:0004222 ... P14780 26263024 MOAD: ic50=0.43nM
    BindingDB: IC50=0.430000nM
    186117 4wzv:B (1.65) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 26263024
    186118 4wzv:B (1.65) BS04 ZN 3.4.24.35 GO:0004222 ... P14780 26263024
    186119 4wzv:B (1.65) BS05 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    186120 4wzv:B (1.65) BS06 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    186121 4wzv:B (1.65) BS07 CA 3.4.24.35 GO:0004222 ... P14780 26263024
    186122 4wzz:A (1.7) BS01 RAM ? GO:0030246 ... A9KIX1 N/A
    186123 4x04:A (2.5) BS01 BDP ? GO:0030246 ... A8AR30 N/A
    186124 4x04:B (2.5) BS01 BDP ? GO:0030246 ... A8AR30 N/A
    186125 4x04:C (2.5) BS01 BDP ? GO:0030246 ... A8AR30 N/A
    186126 4x04:D (2.5) BS01 BDP ? GO:0030246 ... A8AR30 N/A
    186127 4x09:A (1.722) BS01 SO4 3.1.27.- GO:0003676 ... Q93091 27013146
    186128 4x09:A (1.722) BS02 SO4 3.1.27.- GO:0003676 ... Q93091 27013146
    186129 4x0l:A (2.05) BS01 HEM ? GO:0004601 ... P69905 25497229
    186130 4x0l:A (2.05) BS02 OXY ? GO:0004601 ... P69905 25497229
    186131 4x0l:B (2.05) BS01 HEM ? GO:0004601 ... P68871 25497229
    186132 4x0l:B (2.05) BS02 OXY ? GO:0004601 ... P68871 25497229
    186133 4x0m:A (1.68) BS01 3WA 2.7.11.30 GO:0004672 ... P36897 25437144
    186134 4x0n:A (2.6001) BS01 CA 3.2.1.1 GO:0003824 ... P00690 N/A
    186135 4x0o:A (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186136 4x0o:B (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186137 4x0o:D (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186138 4x0o:E (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186139 4x0o:F (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186140 4x0o:G (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186141 4x0o:H (2.2) BS01 COA 2.3.1.180 GO:0004315 ... Q9KLJ3 N/A
    186142 4x0t:A (2.4) BS01 NAD 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186143 4x0t:A (2.4) BS02 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186144 4x0t:B (2.4) BS01 NAD 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186145 4x0t:B (2.4) BS02 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186146 4x0t:C (2.4) BS01 NAD 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186147 4x0t:C (2.4) BS02 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186148 4x0t:D (2.4) BS01 NAD 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186149 4x0t:D (2.4) BS02 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186150 4x0u:A (1.95) BS01 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827 PDBbind: -logKd/Ki=7.40, Ki=0.04uM
    186151 4x0u:B (1.95) BS01 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186152 4x0u:C (1.95) BS01 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186153 4x0u:D (1.95) BS01 3W9 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186154 4x0u:D (1.95) BS02 MG 1.2.1.3
    1.2.1.31
    1.2.1.8    		 GO:0004029 ... P49419 25554827
    186155 4x0z:B (1.85) BS01 GAL ? GO:0005198 ... P90498 25855729
    186156 4x0z:B (1.85) BS02 SIA ? GO:0005198 ... P90498 25855729
    186157 4x0z:C (1.85) BS01 GAL ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    186158 4x0z:C (1.85) BS02 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.15, Kd=0.7mM
    186159 4x0z:D (1.85) BS01 GAL ? GO:0005198 ... P90498 25855729
    186160 4x0z:D (1.85) BS02 SIA ? GO:0005198 ... P90498 25855729
    186161 4x10:B (1.9) BS01 SIA ? GO:0005198 ... P90498 25855729
    186162 4x10:C (1.9) BS01 SIA ? GO:0005198 ... P90498 25855729
    186163 4x10:D (1.9) BS01 SIA ? GO:0005198 ... P90498 25855729
    186164 4x11:A (2.3) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=2.22, Kd=6mM
    186165 4x11:B (2.3) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=2.22, Kd=6mM
    186166 4x11:E (2.3) BS01 SIA ? GO:0005198 ... P90498 25855729
    186167 4x12:A (1.9) BS01 SIA ? GO:0005198 ... P90498 25855729
    186168 4x12:B (1.9) BS01 SIA ? GO:0005198 ... P90498 25855729
    186169 4x12:E (1.9) BS01 SIA ? GO:0005198 ... P90498 25855729
    186170 4x13:B (2.0) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.30, Kd=0.5mM
    186171 4x13:C (2.0) BS01 SIA ? GO:0005198 ... P90498 25855729 PDBbind: -logKd/Ki=3.30, Kd=0.5mM
    186172 4x13:E (2.0) BS01 SIA ? GO:0005198 ... P90498 25855729
    186173 4x14:B (2.3) BS01 GAL ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    186174 4x14:B (2.3) BS02 SIA ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    186175 4x14:C (2.3) BS01 GAL ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    186176 4x14:C (2.3) BS02 SIA ? GO:0005198 ... P03089 25855729 PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    186177 4x14:D (2.3) BS01 GAL ? GO:0005198 ... P03089 25855729
    186178 4x14:D (2.3) BS02 SIA ? GO:0005198 ... P03089 25855729
    186179 4x15:B (2.11) BS01 SIA ? GO:0005198 ... P03089 25855729
    186180 4x15:C (2.11) BS01 SIA ? GO:0005198 ... P03089 25855729
    186181 4x15:D (2.11) BS01 SIA ? GO:0005198 ... P03089 25855729
    186182 4x16:B (1.8) BS01 SIA ? GO:0005198 ... P03089 25855729
    186183 4x16:C (1.8) BS01 SIA ? GO:0005198 ... P03089 25855729
    186184 4x16:D (1.8) BS01 SIA ? GO:0005198 ... P03089 25855729
    186185 4x17:B (1.75) BS01 SIA ? GO:0005198 ... P03089 25855729
    186186 4x17:C (1.75) BS01 SIA ? GO:0005198 ... P03089 25855729
    186187 4x17:D (1.75) BS01 SIA ? GO:0005198 ... P03089 25855729
    186188 4x1b:A (2.45) BS01 FE ? GO:0005515 ... P02787 25854324
    186189 4x1b:A (2.45) BS02 MLI ? GO:0005515 ... P02787 25854324
    186190 4x1d:A (2.8) BS01 MLI ? GO:0005515 ... P02787 25854324
    186191 4x1d:B (2.8) BS01 MLI ? GO:0005515 ... P02787 25854324
    186192 4x1h:A (2.29) BS01 peptide ? GO:0000139 ... P02699 26526852
    186193 4x1i:A (3.11) BS01 GTP ? GO:0000226 ... D0VWZ0 25431858
    186194 4x1i:A (3.11) BS02 MG ? GO:0000226 ... D0VWZ0 25431858
    186195 4x1i:A (3.11) BS03 LOC ? GO:0000226 ... D0VWZ0 25431858
    186196 4x1i:B (3.11) BS01 GDP ? GO:0000226 ... D0VWY9 25431858
    186197 4x1i:B (3.11) BS02 LOC ? GO:0000226 ... D0VWY9 25431858
    186198 4x1i:B (3.11) BS03 3WD ? GO:0000226 ... D0VWY9 25431858
    186199 4x1i:C (3.11) BS01 3WD ? GO:0000226 ... D0VWZ0 25431858
    186200 4x1i:C (3.11) BS02 GTP ? GO:0000226 ... D0VWZ0 25431858
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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