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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    185801 4wzd:5I (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    185802 4wzd:5I (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    185803 4wzd:61 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    185804 4wzd:62 (3.1) BS01 rna ? GO:0000028 ... P17291 26037619
    185805 4wzd:62 (3.1) BS02 rna ? GO:0000028 ... P17291 26037619
    185806 4wzd:65 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    185807 4wzd:65 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    185808 4wzd:68 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    185809 4wzd:68 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    185810 4wzd:69 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    185811 4wzd:69 (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    185812 4wzd:6A (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    185813 4wzd:6A (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    185814 4wzd:6E (3.1) BS01 rna ? GO:0000028 ... P17291 26037619
    185815 4wzd:6E (3.1) BS02 rna ? GO:0000028 ... P17291 26037619
    185816 4wzd:6I (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    185817 4wzd:6I (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    185818 4wzd:71 (3.1) BS01 rna ? GO:0000049 ... P27150 26037619
    185819 4wzd:71 (3.1) BS02 rna ? GO:0000049 ... P27150 26037619
    185820 4wzd:72 (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    185821 4wzd:75 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    185822 4wzd:75 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    185823 4wzd:78 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    185824 4wzd:79 (3.1) BS01 rna ? GO:0000049 ... P27150 26037619
    185825 4wzd:79 (3.1) BS02 rna ? GO:0000049 ... P27150 26037619
    185826 4wzd:7A (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    185827 4wzd:7E (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    185828 4wzd:7I (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    185829 4wzd:82 (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    185830 4wzd:82 (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    185831 4wzd:85 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    185832 4wzd:85 (3.1) BS02 MG ? GO:0000027 ... P60491 26037619
    185833 4wzd:88 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    185834 4wzd:88 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    185835 4wzd:88 (3.1) BS03 MG ? GO:0000049 ... P60489 26037619
    185836 4wzd:8A (3.1) BS01 rna N/A GO:0003735 ... N/A 26037619
    185837 4wzd:8E (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    185838 4wzd:8E (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    185839 4wzd:8I (3.1) BS01 rna N/A GO:0003735 ... N/A 26037619
    185840 4wzd:95 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    185841 4wzd:98 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    185842 4wzd:9A (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    185843 4wzd:9I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    185844 4wzd:A5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    185845 4wzd:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    185846 4wzd:A8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    185847 4wzd:AA (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    185848 4wzd:AI (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    185849 4wzd:B5 (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    185850 4wzd:B8 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    185851 4wzd:B8 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    185852 4wzd:BA (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    185853 4wzd:BI (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    185854 4wzd:C5 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    185855 4wzd:C5 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    185856 4wzd:C8 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    185857 4wzd:D5 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    185858 4wzd:D5 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    185859 4wzd:D8 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    185860 4wzd:E5 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    185861 4wzd:E5 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    185862 4wzd:E8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    185863 4wzd:F5 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    185864 4wzd:F8 (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    185865 4wzd:G5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    185866 4wzd:G8 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    185867 4wzd:G8 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    185868 4wzd:H5 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    185869 4wzd:H5 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    185870 4wzd:H8 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    185871 4wzd:H8 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    185872 4wzd:I5 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    185873 4wzd:I8 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    185874 4wzd:I8 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    185875 4wzd:J5 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    185876 4wzd:J8 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    185877 4wzd:J8 (3.1) BS02 rna ? GO:0003735 ... P60494 26037619
    185878 4wzd:K5 (3.1) BS01 rna ? GO:0000049 ... P35871 26037619
    185879 4wzd:K8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    185880 4wzd:L5 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    185881 4wzd:L8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    185882 4wzd:L8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    185883 4wzd:M5 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    185884 4wzd:M8 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    185885 4wzd:N8 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    185886 4wzd:O8 (3.1) BS01 rna ? GO:0000049 ... P35871 26037619
    185887 4wzd:P8 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    185888 4wzd:Q8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    185889 4wzh:A (2.12) BS01 FMN 1.3.98.1 GO:0000166 ... E9AI53 25945707
    185890 4wzh:B (2.12) BS01 FMN 1.3.98.1 GO:0000166 ... E9AI53 25945707
    185891 4wzj:A (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185892 4wzj:AA (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185893 4wzj:AAA (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185894 4wzj:AAAA (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185895 4wzj:C (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185896 4wzj:CC (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185897 4wzj:CCC (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185898 4wzj:CCCC (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185899 4wzj:D (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185900 4wzj:DD (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185901 4wzj:DDD (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185902 4wzj:DDDD (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185903 4wzj:E (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185904 4wzj:EE (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185905 4wzj:EEE (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185906 4wzj:EEEE (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185907 4wzj:F (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185908 4wzj:FF (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185909 4wzj:FFF (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185910 4wzj:FFFF (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185911 4wzj:G (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185912 4wzj:GG (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185913 4wzj:GGG (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185914 4wzj:GGGG (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185915 4wzj:H (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185916 4wzj:HH (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185917 4wzj:HHH (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185918 4wzj:HHHH (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185919 4wzj:J (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185920 4wzj:JJ (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185921 4wzj:JJJ (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185922 4wzj:JJJJ (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185923 4wzj:K (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185924 4wzj:KK (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185925 4wzj:KKK (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185926 4wzj:KKKK (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185927 4wzj:L (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185928 4wzj:LL (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185929 4wzj:LLL (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185930 4wzj:LLLL (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185931 4wzj:M (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185932 4wzj:MM (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185933 4wzj:MMM (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185934 4wzj:MMMM (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185935 4wzj:N (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185936 4wzj:NN (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185937 4wzj:NNN (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185938 4wzj:NNNN (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185939 4wzj:O (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185940 4wzj:OO (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185941 4wzj:OOO (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185942 4wzj:OOOO (3.6) BS01 rna ? GO:0000243 ... P62318 21516107
    185943 4wzj:Q (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185944 4wzj:QQ (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185945 4wzj:QQQ (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185946 4wzj:QQQQ (3.6) BS01 rna ? GO:0000243 ... P62314 21516107
    185947 4wzj:R (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185948 4wzj:RR (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185949 4wzj:RRR (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185950 4wzj:RRRR (3.6) BS01 rna ? GO:0000245 ... P62316 21516107
    185951 4wzj:S (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185952 4wzj:SS (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185953 4wzj:SSS (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185954 4wzj:SSSS (3.6) BS01 rna ? GO:0000245 ... P62304 21516107
    185955 4wzj:T (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185956 4wzj:TT (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185957 4wzj:TTT (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185958 4wzj:TTTT (3.6) BS01 rna ? GO:0000387 ... P62306 21516107
    185959 4wzj:U (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185960 4wzj:UU (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185961 4wzj:UUU (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185962 4wzj:UUUU (3.6) BS01 rna ? GO:0000245 ... P62308 21516107
    185963 4wzo:11 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    185964 4wzo:11 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    185965 4wzo:11 (3.3) BS03 MG ? GO:0002181 ... P60405 26037619
    185966 4wzo:11 (3.3) BS04 MG ? GO:0002181 ... P60405 26037619
    185967 4wzo:12 (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    185968 4wzo:15 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    185969 4wzo:19 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    185970 4wzo:19 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    185971 4wzo:1A (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    185972 4wzo:1E (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    185973 4wzo:1I (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    185974 4wzo:21 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    185975 4wzo:22 (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    185976 4wzo:25 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    185977 4wzo:25 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    185978 4wzo:29 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    185979 4wzo:29 (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    185980 4wzo:2A (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    185981 4wzo:2A (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    185982 4wzo:2E (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    185983 4wzo:2I (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    185984 4wzo:2I (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    185985 4wzo:31 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    185986 4wzo:32 (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    185987 4wzo:32 (3.3) BS02 ZN ? GO:0003723 ... P80373 26037619
    185988 4wzo:35 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    185989 4wzo:39 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    185990 4wzo:3A (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    185991 4wzo:3E (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    185992 4wzo:3E (3.3) BS02 MG ? GO:0003723 ... P80373 26037619
    185993 4wzo:3E (3.3) BS03 ZN ? GO:0003723 ... P80373 26037619
    185994 4wzo:3I (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    185995 4wzo:41 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    185996 4wzo:41 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    185997 4wzo:41 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    185998 4wzo:41 (3.3) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    185999 4wzo:41 (3.3) BS05 MG ? GO:0000049 ... Q5SHQ0 26037619
    186000 4wzo:42 (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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