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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    185401 4wu8:E (2.45) BS02 dna ? GO:0000786 ... P84233 25916851
    185402 4wu8:F (2.45) BS01 dna ? GO:0000786 ... P62799 25916851
    185403 4wu8:F (2.45) BS02 dna ? GO:0000786 ... P62799 25916851
    185404 4wu8:G (2.45) BS01 dna ? GO:0000786 ... P06897 25916851
    185405 4wu8:G (2.45) BS02 dna ? GO:0000786 ... P06897 25916851
    185406 4wu8:H (2.45) BS01 dna ? GO:0000786 ... P02281 25916851
    185407 4wu8:H (2.45) BS02 dna ? GO:0000786 ... P02281 25916851
    185408 4wu9:A (2.6) BS01 dna ? GO:0000786 ... P84233 25916851
    185409 4wu9:A (2.6) BS02 dna ? GO:0000786 ... P84233 25916851
    185410 4wu9:B (2.6) BS01 dna ? GO:0000786 ... P62799 25916851
    185411 4wu9:B (2.6) BS02 dna ? GO:0000786 ... P62799 25916851
    185412 4wu9:C (2.6) BS01 dna ? GO:0000786 ... P06897 25916851
    185413 4wu9:C (2.6) BS02 dna ? GO:0000786 ... P06897 25916851
    185414 4wu9:D (2.6) BS01 dna ? GO:0000786 ... P02281 25916851
    185415 4wu9:D (2.6) BS02 dna ? GO:0000786 ... P02281 25916851
    185416 4wu9:E (2.6) BS01 dna ? GO:0000786 ... P84233 25916851
    185417 4wu9:E (2.6) BS02 dna ? GO:0000786 ... P84233 25916851
    185418 4wu9:F (2.6) BS01 dna ? GO:0000786 ... P62799 25916851
    185419 4wu9:F (2.6) BS02 dna ? GO:0000786 ... P62799 25916851
    185420 4wu9:G (2.6) BS01 dna ? GO:0000786 ... P06897 25916851
    185421 4wu9:G (2.6) BS02 dna ? GO:0000786 ... P06897 25916851
    185422 4wu9:H (2.6) BS01 dna ? GO:0000786 ... P02281 25916851
    185423 4wu9:H (2.6) BS02 dna ? GO:0000786 ... P02281 25916851
    185424 4wuo:A (2.05) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    185425 4wuo:A (2.05) BS02 NAD 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    185426 4wuo:A (2.05) BS03 NAD 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    185427 4wuo:B (2.05) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    185428 4wuo:B (2.05) BS02 NAD 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    185429 4wup:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542
    185430 4wup:A (1.75) BS02 3UF 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 MOAD: Kd=0.15nM
    PDBbind: -logKd/Ki=9.82, Kd=0.15nM
    BindingDB: Kd=790nM
    185431 4wup:B (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542
    185432 4wup:B (1.75) BS02 3UF 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 MOAD: Kd=0.15nM
    BindingDB: Kd=790nM
    185433 4wuq:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542
    185434 4wuq:A (1.75) BS02 3UG 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 BindingDB: Kd=0.029nM
    185435 4wuq:B (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542
    185436 4wuq:B (1.75) BS02 3UG 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 BindingDB: Kd=0.029nM
    185437 4wut:A (1.5) BS01 FCB ? GO:0030246 ... B9K0B2 N/A
    185438 4wut:A (1.5) BS02 CA ? GO:0030246 ... B9K0B2 N/A
    185439 4wut:A (1.5) BS03 CA ? GO:0030246 ... B9K0B2 N/A
    185440 4wuy:A (1.63) BS01 3UJ 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 25825497 MOAD: ic50<15nM
    PDBbind: -logKd/Ki=7.82, IC50<15nM
    BindingDB: IC50=<15nM
    185441 4wuy:A (1.63) BS02 SAH 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 25825497 BindingDB: IC50=180nM
    185442 4wuy:A (1.63) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 25825497
    185443 4wuy:A (1.63) BS04 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 25825497
    185444 4wuy:A (1.63) BS05 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 25825497
    185445 4wv6:A (1.75) BS01 peptide ? GO:0005737 ... P52292 25586196
    185446 4wv6:A (1.75) BS02 peptide ? GO:0005737 ... P52292 25586196
    185447 4wv9:A (2.0) BS01 MD4 ? GO:0004888 ... Q8WSF8 N/A
    185448 4wv9:B (2.0) BS01 MD4 ? GO:0004888 ... Q8WSF8 N/A
    185449 4wv9:D (2.0) BS01 MD4 ? GO:0004888 ... Q8WSF8 N/A
    185450 4wv9:E (2.0) BS01 MD4 ? GO:0004888 ... Q8WSF8 N/A
    185451 4wvf:A (1.8) BS01 GNP 3.6.5.- GO:0000054 ... P62826 25706475
    185452 4wvf:A (1.8) BS02 MG 3.6.5.- GO:0000054 ... P62826 25706475
    185453 4wvg:A (2.05) BS01 GLC 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185454 4wvg:A (2.05) BS02 GLC 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185455 4wvh:A (2.1) BS01 peptide 3.4.21.89 GO:0004252 ... P0AEX9 26870377
    185456 4wvh:A (2.1) BS02 GLC 3.4.21.89 GO:0004252 ... P0AEX9 26870377
    185457 4wvh:A (2.1) BS03 GLC 3.4.21.89 GO:0004252 ... P0AEX9 26870377
    185458 4wvi:A (1.9) BS01 peptide 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185459 4wvi:A (1.9) BS02 GLC 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185460 4wvi:A (1.9) BS03 GLC 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185461 4wvj:A (1.95) BS01 peptide 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185462 4wvj:A (1.95) BS02 GLC 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185463 4wvj:A (1.95) BS03 GLC 3.4.21.89 GO:0004252 ... P0AEX9
    Q5HHB9    		 26870377
    185464 4wvo:A (2.251) BS01 3UZ ? GO:0004864 ... O49686 25652827 MOAD: ic50=32nM
    185465 4wvp:E (1.63) BS01 peptide 3.4.21.37 GO:0000122 ... P08246 25581168
    185466 4wvp:E (1.63) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 25581168
    185467 4wvy:A (3.64) BS01 ATP 3.6.4.12 GO:0000492 ... G0RYI5 25661652
    185468 4ww0:A (2.96) BS01 ZN 3.4.24.- GO:0004176 ... O67077 26057670
    185469 4ww0:A (2.96) BS02 ADP 3.4.24.- GO:0004176 ... O67077 26057670
    185470 4ww0:B (2.96) BS01 ZN 3.4.24.- GO:0004176 ... O67077 26057670
    185471 4ww0:B (2.96) BS02 ADP 3.4.24.- GO:0004176 ... O67077 26057670
    185472 4ww0:C (2.96) BS01 ADP 3.4.24.- GO:0004176 ... O67077 26057670
    185473 4ww0:C (2.96) BS02 ZN 3.4.24.- GO:0004176 ... O67077 26057670
    185474 4ww0:C (2.96) BS03 ADP 3.4.24.- GO:0004176 ... O67077 26057670
    185475 4ww3:A (2.8) BS01 RET ? GO:0004930 ... P31356 26024518
    185476 4ww3:B (2.8) BS01 RET ? GO:0004930 ... P31356 26024518
    185477 4ww4:A (2.94) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 25661652
    185478 4ww4:B (2.94) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 25661652
    185479 4ww5:A (1.997) BS01 ANP 2.7.11.1
    3.6.-.-    		 GO:0000282 ... P53323 25735745
    185480 4ww6:A (1.06) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26079542
    185481 4ww6:A (1.06) BS02 3TV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26079542 MOAD: Kd=0.062nM
    PDBbind: -logKd/Ki=10.21, Kd=0.062nM
    BindingDB: Kd=0.91nM
    185482 4ww6:A (1.06) BS03 3TV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26079542 MOAD: Kd=0.062nM
    PDBbind: -logKd/Ki=10.21, Kd=0.062nM
    BindingDB: Kd=0.91nM
    185483 4ww7:A (1.669) BS01 AMP 2.7.11.1
    3.6.-.-    		 GO:0000282 ... P53323 25735745
    185484 4ww9:A (1.951) BS01 MG 2.7.11.1
    3.6.-.-    		 GO:0000282 ... P53323 25735745
    185485 4ww9:A (1.951) BS02 ADP 2.7.11.1
    3.6.-.-    		 GO:0000282 ... P53323 25735745
    185486 4wwb:A (1.11) BS01 NI ? GO:0042597 ... P37975 25628016
    185487 4wwd:A (1.3) BS01 CO ? GO:0042597 ... P37975 25628016
    185488 4wwf:A (1.1) BS01 NI ? GO:0042597 ... P37975 25628016
    185489 4wwf:B (1.1) BS01 NI ? GO:0042597 ... P37975 25628016
    185490 4wwh:A (1.2) BS01 GAL 3.6.3.17 GO:0030246 ... A0QT42 N/A
    185491 4wwh:B (1.2) BS01 GAL 3.6.3.17 GO:0030246 ... A0QT42 N/A
    185492 4wwl:A (2.23) BS01 MTN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 N/A
    185493 4wwl:A (2.23) BS02 ZN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 N/A
    185494 4wwl:A (2.23) BS03 ZN 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 N/A
    185495 4wwl:A (2.23) BS04 CO3 3.1.3.5
    3.6.1.45    		 GO:0000166 ... P07024 N/A
    185496 4wwu:C (3.301) BS01 ZN ? GO:0000055 ... P34232 25618852
    185497 4www:QB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 20855725
    185498 4www:QD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 20855725
    185499 4www:QE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 20855725
    185500 4www:QF (3.1) BS01 rna ? GO:0003735 ... P02358 20855725
    185501 4www:QG (3.1) BS01 rna ? GO:0003723 ... P02359 20855725
    185502 4www:QH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 20855725
    185503 4www:QI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 20855725
    185504 4www:QJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 20855725
    185505 4www:QK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 20855725
    185506 4www:QL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 20855725
    185507 4www:QM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 20855725
    185508 4www:QN (3.1) BS01 rna ? GO:0000028 ... P0AG59 20855725
    185509 4www:QO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 20855725
    185510 4www:QP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 20855725
    185511 4www:QQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 20855725
    185512 4www:QR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 20855725
    185513 4www:QS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 20855725
    185514 4www:QT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 20855725
    185515 4www:QU (3.1) BS01 rna ? GO:0003735 ... P68679 20855725
    185516 4www:R0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 20855725
    185517 4www:R1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 20855725
    185518 4www:R2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 20855725
    185519 4www:R3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 20855725
    185520 4www:R4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 20855725
    185521 4www:R4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 20855725
    185522 4www:RC (3.1) BS01 rna ? GO:0000027 ... P60422 20855725
    185523 4www:RD (3.1) BS01 rna ? GO:0000027 ... P60438 20855725
    185524 4www:RE (3.1) BS01 rna ? GO:0001070 ... P60723 20855725
    185525 4www:RF (3.1) BS01 rna ? GO:0000027 ... P62399 20855725
    185526 4www:RF (3.1) BS02 rna ? GO:0000027 ... P62399 20855725
    185527 4www:RG (3.1) BS01 rna ? GO:0000027 ... P0AG55 20855725
    185528 4www:RH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 20855725
    185529 4www:RI (3.1) BS01 rna ? GO:0000027 ... P0A7J7 20855725
    185530 4www:RJ (3.1) BS01 rna ? GO:0002181 ... P0AA10 20855725
    185531 4www:RK (3.1) BS01 rna ? GO:0002181 ... P0ADY3 20855725
    185532 4www:RK (3.1) BS02 rna ? GO:0002181 ... P0ADY3 20855725
    185533 4www:RL (3.1) BS01 rna ? GO:0002181 ... P02413 20855725
    185534 4www:RM (3.1) BS01 rna ? GO:0000027 ... P0ADY7 20855725
    185535 4www:RM (3.1) BS02 rna ? GO:0000027 ... P0ADY7 20855725
    185536 4www:RN (3.1) BS01 rna ? GO:0000027 ... P0AG44 20855725
    185537 4www:RO (3.1) BS01 rna ? GO:0002181 ... P0C018 20855725
    185538 4www:RO (3.1) BS02 rna ? GO:0002181 ... P0C018 20855725
    185539 4www:RP (3.1) BS01 rna ? GO:0000027 ... P0A7K6 20855725
    185540 4www:RP (3.1) BS02 rna ? GO:0000027 ... P0A7K6 20855725
    185541 4www:RQ (3.1) BS01 rna ? GO:0000027 ... P0A7L3 20855725
    185542 4www:RR (3.1) BS01 rna ? GO:0002181 ... P0AG48 20855725
    185543 4www:RS (3.1) BS01 rna ? GO:0002181 ... P61175 20855725
    185544 4www:RT (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 20855725
    185545 4www:RU (3.1) BS01 rna ? GO:0000027 ... P60624 20855725
    185546 4www:RV (3.1) BS01 rna ? GO:0000027 ... P68919 20855725
    185547 4www:RV (3.1) BS02 rna ? GO:0000027 ... P68919 20855725
    185548 4www:RW (3.1) BS01 rna ? GO:0000027 ... P0A7L8 20855725
    185549 4www:RX (3.1) BS01 rna ? GO:0000027 ... P0A7M2 20855725
    185550 4www:RY (3.1) BS01 rna ? GO:0000027 ... P0A7M6 20855725
    185551 4www:RZ (3.1) BS01 rna ? GO:0000027 ... P0AG51 20855725
    185552 4www:XB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 20855725
    185553 4www:XB (3.1) BS02 rna ? GO:0000028 ... P0A7V0 20855725
    185554 4www:XD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 20855725
    185555 4www:XD (3.1) BS02 rna ? GO:0000028 ... P0A7V8 20855725
    185556 4www:XE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 20855725
    185557 4www:XF (3.1) BS01 rna ? GO:0003735 ... P02358 20855725
    185558 4www:XG (3.1) BS01 rna ? GO:0003723 ... P02359 20855725
    185559 4www:XH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 20855725
    185560 4www:XI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 20855725
    185561 4www:XJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 20855725
    185562 4www:XK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 20855725
    185563 4www:XL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 20855725
    185564 4www:XM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 20855725
    185565 4www:XN (3.1) BS01 rna ? GO:0000028 ... P0AG59 20855725
    185566 4www:XO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 20855725
    185567 4www:XO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 20855725
    185568 4www:XP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 20855725
    185569 4www:XQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 20855725
    185570 4www:XR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 20855725
    185571 4www:XS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 20855725
    185572 4www:XT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 20855725
    185573 4www:XU (3.1) BS01 rna ? GO:0003735 ... P68679 20855725
    185574 4www:Y0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 20855725
    185575 4www:Y1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 20855725
    185576 4www:Y2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 20855725
    185577 4www:Y3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 20855725
    185578 4www:Y4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 20855725
    185579 4www:YC (3.1) BS01 rna ? GO:0000027 ... P60422 20855725
    185580 4www:YD (3.1) BS01 rna ? GO:0000027 ... P60438 20855725
    185581 4www:YE (3.1) BS01 rna ? GO:0001070 ... P60723 20855725
    185582 4www:YF (3.1) BS01 rna ? GO:0000027 ... P62399 20855725
    185583 4www:YF (3.1) BS02 rna ? GO:0000027 ... P62399 20855725
    185584 4www:YG (3.1) BS01 rna ? GO:0000027 ... P0AG55 20855725
    185585 4www:YH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 20855725
    185586 4www:YI (3.1) BS01 rna ? GO:0000027 ... P0A7J7 20855725
    185587 4www:YJ (3.1) BS01 rna ? GO:0002181 ... P0AA10 20855725
    185588 4www:YK (3.1) BS01 rna ? GO:0002181 ... P0ADY3 20855725
    185589 4www:YK (3.1) BS02 rna ? GO:0002181 ... P0ADY3 20855725
    185590 4www:YL (3.1) BS01 rna ? GO:0002181 ... P02413 20855725
    185591 4www:YM (3.1) BS01 rna ? GO:0000027 ... P0ADY7 20855725
    185592 4www:YM (3.1) BS02 rna ? GO:0000027 ... P0ADY7 20855725
    185593 4www:YN (3.1) BS01 rna ? GO:0000027 ... P0AG44 20855725
    185594 4www:YO (3.1) BS01 rna ? GO:0002181 ... P0C018 20855725
    185595 4www:YO (3.1) BS02 rna ? GO:0002181 ... P0C018 20855725
    185596 4www:YP (3.1) BS01 rna ? GO:0000027 ... P0A7K6 20855725
    185597 4www:YP (3.1) BS02 rna ? GO:0000027 ... P0A7K6 20855725
    185598 4www:YQ (3.1) BS01 rna ? GO:0000027 ... P0A7L3 20855725
    185599 4www:YR (3.1) BS01 rna ? GO:0002181 ... P0AG48 20855725
    185600 4www:YS (3.1) BS01 rna ? GO:0002181 ... P61175 20855725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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