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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    185201 4wt8:D8 (3.4) BS01 rna ? GO:0003735 ... P80340 25562208
    185202 4wt8:D9 (3.4) BS01 rna ? GO:0003735 ... Q5SKU1 25562208
    185203 4wt8:DB (3.4) BS01 rna ? GO:0002181 ... P60405 25562208
    185204 4wt8:DC (3.4) BS01 rna ? GO:0003735 ... Q5SHN8 25562208
    185205 4wt8:DD (3.4) BS01 rna ? GO:0003735 ... Q5SHN9 25562208
    185206 4wt8:DE (3.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25562208
    185207 4wt8:DE (3.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25562208
    185208 4wt8:DE (3.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25562208
    185209 4wt8:DF (3.4) BS01 rna ? GO:0003735 ... P0DOY8 25562208
    185210 4wt8:DH (3.4) BS01 rna ? GO:0003735 ... P60494 25562208
    185211 4wt8:DI (3.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25562208
    185212 4wt8:DI (3.4) BS02 rna ? GO:0003735 ... Q5SLQ1 25562208
    185213 4wt8:DK (3.4) BS01 rna ? GO:0003735 ... Q5SHP6 25562208
    185214 4wt8:DL (3.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25562208
    185215 4wt8:DM (3.4) BS01 rna ? GO:0003729 ... P60488 25562208
    185216 4wt8:DN (3.4) BS01 rna ? GO:0003735 ... Q5SHP8 25562208
    185217 4wt8:DN (3.4) BS02 rna ? GO:0003735 ... Q5SHP8 25562208
    185218 4wt8:DO (3.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25562208
    185219 4wt8:DP (3.4) BS01 rna ? GO:0000049 ... P60489 25562208
    185220 4wt8:DQ (3.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25562208
    185221 4wt8:DR (3.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25562208
    185222 4wt8:DR (3.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25562208
    185223 4wt8:DS (3.4) BS01 rna ? GO:0003735 ... P60490 25562208
    185224 4wt8:DS (3.4) BS02 rna ? GO:0003735 ... P60490 25562208
    185225 4wt8:DT (3.4) BS01 rna ? GO:0000027 ... P60491 25562208
    185226 4wt8:DU (3.4) BS01 rna ? GO:0003723 ... P60492 25562208
    185227 4wt8:DW (3.4) BS01 rna ? GO:0003735 ... Q5SHP3 25562208
    185228 4wt8:DX (3.4) BS01 rna ? GO:0000027 ... Q5SHP0 25562208
    185229 4wt8:DY (3.4) BS01 rna ? GO:0003723 ... Q5SHP9 25562208
    185230 4wt8:DZ (3.4) BS01 rna ? GO:0003735 ... Q5SHZ1 25562208
    185231 4wt8:DZ (3.4) BS02 rna ? GO:0003735 ... Q5SHZ1 25562208
    185232 4wt8:Da (3.4) BS01 rna ? GO:0003735 ... P60493 25562208
    185233 4wt8:Da (3.4) BS02 rna ? GO:0003735 ... P60493 25562208
    185234 4wth:A (2.25) BS01 GLC ?
    3.4.19.12    		 GO:0005515 ... P0AEX9
    P54252    		 27047745
    185235 4wth:A (2.25) BS02 GLC ?
    3.4.19.12    		 GO:0005515 ... P0AEX9
    P54252    		 27047745
    185236 4wth:B (2.25) BS01 GLC ?
    3.4.19.12    		 GO:0005515 ... P0AEX9
    P54252    		 27047745
    185237 4wth:B (2.25) BS02 GLC ?
    3.4.19.12    		 GO:0005515 ... P0AEX9
    P54252    		 27047745
    185238 4wth:B (2.25) BS03 ZN ?
    3.4.19.12    		 GO:0005515 ... P0AEX9
    P54252    		 27047745
    185239 4wtr:A (2.27) BS01 BGC 2.4.1.- GO:0004553 ... A0A0M3KKZ8 26249352
    185240 4wtr:A (2.27) BS02 BGC 2.4.1.- GO:0004553 ... A0A0M3KKZ8 26249352
    185241 4wts:A (2.3) BS01 BGC 2.4.1.- GO:0004553 ... A0A0M3KKZ8 26249352
    185242 4wts:A (2.3) BS02 BGC 2.4.1.- GO:0004553 ... A0A0M3KKZ8 26249352
    185243 4wtu:A (1.85) BS01 3UT 3.4.23.46 GO:0004190 ... P56817 25699151 MOAD: ic50=0.3nM
    PDBbind: -logKd/Ki=9.52, IC50=0.3nM
    BindingDB: IC50=3.0nM
    185244 4wtv:A (1.9) BS01 ATP 2.7.1.67
    3.2.1.17    		 GO:0003796 ... P00720
    Q8TCG2    		 26143926
    185245 4wtv:B (1.9) BS01 ATP 2.7.1.67
    3.2.1.17    		 GO:0003796 ... P00720
    Q8TCG2    		 26143926
    185246 4wtv:B (1.9) BS02 ATP 2.7.1.67
    3.2.1.17    		 GO:0003796 ... P00720
    Q8TCG2    		 26143926
    185247 4wu1:11 (3.2) BS01 rna ? GO:0002181 ... P60405 26037619
    185248 4wu1:12 (3.2) BS01 rna ? GO:0003735 ... P80371 26037619
    185249 4wu1:15 (3.2) BS01 rna ? GO:0003729 ... P60488 26037619
    185250 4wu1:19 (3.2) BS01 rna ? GO:0002181 ... P60405 26037619
    185251 4wu1:19 (3.2) BS02 rna ? GO:0002181 ... P60405 26037619
    185252 4wu1:19 (3.2) BS03 MG ? GO:0002181 ... P60405 26037619
    185253 4wu1:1A (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    185254 4wu1:1E (3.2) BS01 rna ? GO:0003735 ... P80371 26037619
    185255 4wu1:1I (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    185256 4wu1:21 (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    185257 4wu1:21 (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    185258 4wu1:22 (3.2) BS01 rna ? GO:0003676 ... P80372 26037619
    185259 4wu1:25 (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    185260 4wu1:25 (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    185261 4wu1:29 (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    185262 4wu1:2A (3.2) BS01 rna ? GO:0003735 ... P80376 26037619
    185263 4wu1:2A (3.2) BS02 MG ? GO:0003735 ... P80376 26037619
    185264 4wu1:2E (3.2) BS01 rna ? GO:0003676 ... P80372 26037619
    185265 4wu1:2I (3.2) BS01 rna ? GO:0003735 ... P80376 26037619
    185266 4wu1:2I (3.2) BS02 MG ? GO:0003735 ... P80376 26037619
    185267 4wu1:31 (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    185268 4wu1:31 (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    185269 4wu1:31 (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 26037619
    185270 4wu1:32 (3.2) BS01 rna ? GO:0003723 ... P80373 26037619
    185271 4wu1:32 (3.2) BS02 ZN ? GO:0003723 ... P80373 26037619
    185272 4wu1:35 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    185273 4wu1:39 (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    185274 4wu1:39 (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    185275 4wu1:3A (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    185276 4wu1:3E (3.2) BS01 rna ? GO:0003723 ... P80373 26037619
    185277 4wu1:3I (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    185278 4wu1:3I (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 26037619
    185279 4wu1:41 (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    185280 4wu1:41 (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    185281 4wu1:42 (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    185282 4wu1:42 (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 26037619
    185283 4wu1:45 (3.2) BS01 rna ? GO:0000049 ... P60489 26037619
    185284 4wu1:45 (3.2) BS02 rna ? GO:0000049 ... P60489 26037619
    185285 4wu1:49 (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    185286 4wu1:49 (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    185287 4wu1:49 (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    185288 4wu1:4A (3.2) BS01 rna ? GO:0000049 ... P80377 26037619
    185289 4wu1:4A (3.2) BS02 MG ? GO:0000049 ... P80377 26037619
    185290 4wu1:4E (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    185291 4wu1:4I (3.2) BS01 rna ? GO:0000049 ... P80377 26037619
    185292 4wu1:51 (3.2) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    185293 4wu1:52 (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    185294 4wu1:55 (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    185295 4wu1:58 (3.2) BS01 rna ? GO:0003729 ... P60488 26037619
    185296 4wu1:59 (3.2) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    185297 4wu1:5A (3.2) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    185298 4wu1:5A (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    185299 4wu1:5E (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    185300 4wu1:5I (3.2) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    185301 4wu1:5I (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    185302 4wu1:61 (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    185303 4wu1:62 (3.2) BS01 rna ? GO:0000028 ... P17291 26037619
    185304 4wu1:62 (3.2) BS02 rna ? GO:0000028 ... P17291 26037619
    185305 4wu1:65 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    185306 4wu1:65 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    185307 4wu1:68 (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    185308 4wu1:68 (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    185309 4wu1:69 (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    185310 4wu1:69 (3.2) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    185311 4wu1:6A (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    185312 4wu1:6E (3.2) BS01 rna ? GO:0000028 ... P17291 26037619
    185313 4wu1:6E (3.2) BS02 rna ? GO:0000028 ... P17291 26037619
    185314 4wu1:6I (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    185315 4wu1:6I (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    185316 4wu1:71 (3.2) BS01 rna ? GO:0000049 ... P27150 26037619
    185317 4wu1:71 (3.2) BS02 rna ? GO:0000049 ... P27150 26037619
    185318 4wu1:72 (3.2) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    185319 4wu1:72 (3.2) BS02 MG ? GO:0003735 ... P0DOY9 26037619
    185320 4wu1:75 (3.2) BS01 rna ? GO:0003735 ... P60490 26037619
    185321 4wu1:75 (3.2) BS02 rna ? GO:0003735 ... P60490 26037619
    185322 4wu1:78 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    185323 4wu1:79 (3.2) BS01 rna ? GO:0000049 ... P27150 26037619
    185324 4wu1:7A (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    185325 4wu1:7E (3.2) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    185326 4wu1:7I (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    185327 4wu1:82 (3.2) BS01 rna ? GO:0000049 ... P80374 26037619
    185328 4wu1:85 (3.2) BS01 rna ? GO:0000027 ... P60491 26037619
    185329 4wu1:88 (3.2) BS01 rna ? GO:0000049 ... P60489 26037619
    185330 4wu1:88 (3.2) BS02 rna ? GO:0000049 ... P60489 26037619
    185331 4wu1:88 (3.2) BS03 MG ? GO:0000049 ... P60489 26037619
    185332 4wu1:8A (3.2) BS01 rna N/A GO:0003735 ... N/A 26037619
    185333 4wu1:8E (3.2) BS01 rna ? GO:0000049 ... P80374 26037619
    185334 4wu1:8E (3.2) BS02 rna ? GO:0000049 ... P80374 26037619
    185335 4wu1:8I (3.2) BS01 rna N/A GO:0003735 ... N/A 26037619
    185336 4wu1:95 (3.2) BS01 rna ? GO:0003723 ... P60492 26037619
    185337 4wu1:98 (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    185338 4wu1:9A (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    185339 4wu1:9I (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    185340 4wu1:A5 (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    185341 4wu1:A8 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    185342 4wu1:A8 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    185343 4wu1:AA (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    185344 4wu1:AI (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    185345 4wu1:B5 (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    185346 4wu1:B8 (3.2) BS01 rna ? GO:0003735 ... P60490 26037619
    185347 4wu1:B8 (3.2) BS02 rna ? GO:0003735 ... P60490 26037619
    185348 4wu1:BA (3.2) BS01 rna ? GO:0003723 ... P80380 26037619
    185349 4wu1:BI (3.2) BS01 rna ? GO:0003723 ... P80380 26037619
    185350 4wu1:C5 (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    185351 4wu1:C5 (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    185352 4wu1:C8 (3.2) BS01 rna ? GO:0000027 ... P60491 26037619
    185353 4wu1:D5 (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    185354 4wu1:D5 (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    185355 4wu1:D8 (3.2) BS01 rna ? GO:0003723 ... P60492 26037619
    185356 4wu1:E5 (3.2) BS01 rna ? GO:0003735 ... P60493 26037619
    185357 4wu1:E5 (3.2) BS02 rna ? GO:0003735 ... P60493 26037619
    185358 4wu1:E8 (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    185359 4wu1:F5 (3.2) BS01 rna ? GO:0003735 ... P60494 26037619
    185360 4wu1:F8 (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    185361 4wu1:G5 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    185362 4wu1:G8 (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    185363 4wu1:G8 (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    185364 4wu1:H5 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    185365 4wu1:H5 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    185366 4wu1:H8 (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    185367 4wu1:H8 (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    185368 4wu1:I5 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    185369 4wu1:I8 (3.2) BS01 rna ? GO:0003735 ... P60493 26037619
    185370 4wu1:I8 (3.2) BS02 rna ? GO:0003735 ... P60493 26037619
    185371 4wu1:J5 (3.2) BS01 rna ? GO:0003735 ... P80339 26037619
    185372 4wu1:J8 (3.2) BS01 rna ? GO:0003735 ... P60494 26037619
    185373 4wu1:J8 (3.2) BS02 rna ? GO:0003735 ... P60494 26037619
    185374 4wu1:K8 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    185375 4wu1:L5 (3.2) BS01 rna ? GO:0003735 ... P80340 26037619
    185376 4wu1:L8 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    185377 4wu1:L8 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    185378 4wu1:M5 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    185379 4wu1:M8 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    185380 4wu1:N8 (3.2) BS01 rna ? GO:0003735 ... P80339 26037619
    185381 4wu1:P8 (3.2) BS01 rna ? GO:0003735 ... P80340 26037619
    185382 4wu1:Q8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    185383 4wu3:A (2.2) BS01 4IP 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185384 4wu3:A (2.2) BS02 4IP 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185385 4wu3:B (2.2) BS01 4IP 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185386 4wu3:B (2.2) BS02 PO4 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185387 4wu3:C (2.2) BS01 4IP 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185388 4wu3:C (2.2) BS02 4IP 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185389 4wu3:C (2.2) BS03 PO4 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185390 4wu3:D (2.2) BS01 4IP 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185391 4wu3:D (2.2) BS02 PO4 3.1.3.8 GO:0004725 ... A3QMF6 N/A
    185392 4wu8:A (2.45) BS01 dna ? GO:0000786 ... P84233 25916851
    185393 4wu8:A (2.45) BS02 dna ? GO:0000786 ... P84233 25916851
    185394 4wu8:B (2.45) BS01 dna ? GO:0000786 ... P62799 25916851
    185395 4wu8:B (2.45) BS02 dna ? GO:0000786 ... P62799 25916851
    185396 4wu8:C (2.45) BS01 dna ? GO:0000786 ... P06897 25916851
    185397 4wu8:C (2.45) BS02 dna ? GO:0000786 ... P06897 25916851
    185398 4wu8:D (2.45) BS01 dna ? GO:0000786 ... P02281 25916851
    185399 4wu8:D (2.45) BS02 dna ? GO:0000786 ... P02281 25916851
    185400 4wu8:E (2.45) BS01 dna ? GO:0000786 ... P84233 25916851
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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