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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    185001 4wt1:39 (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    185002 4wt1:3A (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    185003 4wt1:3E (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    185004 4wt1:3I (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    185005 4wt1:41 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    185006 4wt1:41 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    185007 4wt1:41 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    185008 4wt1:41 (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    185009 4wt1:42 (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    185010 4wt1:45 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    185011 4wt1:45 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    185012 4wt1:45 (3.05) BS03 rna ? GO:0000049 ... P60489 26037619
    185013 4wt1:45 (3.05) BS04 MG ? GO:0000049 ... P60489 26037619
    185014 4wt1:49 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    185015 4wt1:49 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    185016 4wt1:49 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    185017 4wt1:49 (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    185018 4wt1:4A (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    185019 4wt1:4E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    185020 4wt1:4E (3.05) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    185021 4wt1:4I (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    185022 4wt1:4I (3.05) BS02 rna ? GO:0000049 ... P80377 26037619
    185023 4wt1:4I (3.05) BS03 rna ? GO:0000049 ... P80377 26037619
    185024 4wt1:51 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185025 4wt1:52 (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    185026 4wt1:55 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    185027 4wt1:58 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    185028 4wt1:59 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185029 4wt1:5A (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185030 4wt1:5A (3.05) BS02 ZN N/A GO:0003735 ... N/A 26037619
    185031 4wt1:5E (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    185032 4wt1:5E (3.05) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    185033 4wt1:5I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185034 4wt1:5I (3.05) BS02 ZN N/A GO:0003735 ... N/A 26037619
    185035 4wt1:61 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    185036 4wt1:62 (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    185037 4wt1:62 (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    185038 4wt1:65 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    185039 4wt1:65 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    185040 4wt1:68 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    185041 4wt1:68 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    185042 4wt1:69 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    185043 4wt1:69 (3.05) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    185044 4wt1:6A (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    185045 4wt1:6A (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    185046 4wt1:6E (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    185047 4wt1:6E (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    185048 4wt1:6I (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    185049 4wt1:6I (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    185050 4wt1:72 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185051 4wt1:75 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    185052 4wt1:75 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    185053 4wt1:78 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    185054 4wt1:7A (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    185055 4wt1:7E (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185056 4wt1:7I (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    185057 4wt1:82 (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    185058 4wt1:82 (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    185059 4wt1:85 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    185060 4wt1:88 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    185061 4wt1:88 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    185062 4wt1:88 (3.05) BS03 rna ? GO:0000049 ... P60489 26037619
    185063 4wt1:88 (3.05) BS04 MG ? GO:0000049 ... P60489 26037619
    185064 4wt1:8A (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185065 4wt1:8E (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    185066 4wt1:8E (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    185067 4wt1:8I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    185068 4wt1:95 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    185069 4wt1:98 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    185070 4wt1:9A (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    185071 4wt1:9I (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    185072 4wt1:A5 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    185073 4wt1:A8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    185074 4wt1:A8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    185075 4wt1:AA (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    185076 4wt1:AI (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    185077 4wt1:B5 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    185078 4wt1:B8 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    185079 4wt1:B8 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    185080 4wt1:BA (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    185081 4wt1:BI (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    185082 4wt1:C5 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    185083 4wt1:C5 (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    185084 4wt1:C8 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    185085 4wt1:D5 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    185086 4wt1:D5 (3.05) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    185087 4wt1:D8 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    185088 4wt1:E5 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    185089 4wt1:E5 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    185090 4wt1:E8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    185091 4wt1:F5 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    185092 4wt1:F8 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    185093 4wt1:G5 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    185094 4wt1:G8 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    185095 4wt1:G8 (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    185096 4wt1:H5 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    185097 4wt1:H5 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    185098 4wt1:H8 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    185099 4wt1:I5 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    185100 4wt1:I8 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    185101 4wt1:I8 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    185102 4wt1:J5 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    185103 4wt1:J8 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    185104 4wt1:K5 (3.05) BS01 rna ? GO:0000049 ... P35871 26037619
    185105 4wt1:K8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    185106 4wt1:L5 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    185107 4wt1:L8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    185108 4wt1:L8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    185109 4wt1:M5 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    185110 4wt1:M8 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    185111 4wt1:N8 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    185112 4wt1:O8 (3.05) BS01 rna ? GO:0000049 ... P35871 26037619
    185113 4wt1:P8 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    185114 4wt1:Q8 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    185115 4wt2:A (1.42) BS01 3UD 2.3.2.27 GO:0005634 ... Q00987 25384157 MOAD: Kd=38pM
    PDBbind: -logKd/Ki=10.42, Kd=38pM
    BindingDB: IC50=0.600000nM, Kd=257nM
    185116 4wt7:A (2.0) BS01 X9X ? GO:0030246 ... B9K0E0 N/A
    185117 4wt7:B (2.0) BS01 X9X ? GO:0030246 ... B9K0E0 N/A
    185118 4wt8:AA (3.4) BS01 rna ? GO:0003735 ... P80371 25562208
    185119 4wt8:AC (3.4) BS01 rna ? GO:0003676 ... P80372 25562208
    185120 4wt8:AD (3.4) BS01 rna ? GO:0003723 ... P80373 25562208
    185121 4wt8:AE (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25562208
    185122 4wt8:AF (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 25562208
    185123 4wt8:AG (3.4) BS01 rna ? GO:0000028 ... P17291 25562208
    185124 4wt8:AG (3.4) BS02 rna ? GO:0000028 ... P17291 25562208
    185125 4wt8:AH (3.4) BS01 rna ? GO:0003735 ... P0DOY9 25562208
    185126 4wt8:AI (3.4) BS01 rna ? GO:0000049 ... P80374 25562208
    185127 4wt8:AJ (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 25562208
    185128 4wt8:AK (3.4) BS01 rna ? GO:0003735 ... P80376 25562208
    185129 4wt8:AL (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 25562208
    185130 4wt8:AM (3.4) BS01 rna ? GO:0000049 ... P80377 25562208
    185131 4wt8:AM (3.4) BS02 rna ? GO:0000049 ... P80377 25562208
    185132 4wt8:AN (3.4) BS01 rna ? GO:0003735 ... P0DOY6 25562208
    185133 4wt8:AO (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 25562208
    185134 4wt8:AO (3.4) BS02 rna ? GO:0003735 ... Q5SJ76 25562208
    185135 4wt8:AP (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 25562208
    185136 4wt8:AR (3.4) BS01 rna ? GO:0003735 ... P0DOY7 25562208
    185137 4wt8:AS (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25562208
    185138 4wt8:AT (3.4) BS01 rna ? GO:0003723 ... Q5SHP2 25562208
    185139 4wt8:AU (3.4) BS01 rna ? GO:0003723 ... P80380 25562208
    185140 4wt8:BA (3.4) BS01 rna ? GO:0003735 ... P80371 25562208
    185141 4wt8:BD (3.4) BS01 rna ? GO:0003723 ... P80373 25562208
    185142 4wt8:BE (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25562208
    185143 4wt8:BF (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 25562208
    185144 4wt8:BG (3.4) BS01 rna ? GO:0000028 ... P17291 25562208
    185145 4wt8:BG (3.4) BS02 rna ? GO:0000028 ... P17291 25562208
    185146 4wt8:BH (3.4) BS01 rna ? GO:0003735 ... P0DOY9 25562208
    185147 4wt8:BI (3.4) BS01 rna ? GO:0000049 ... P80374 25562208
    185148 4wt8:BJ (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 25562208
    185149 4wt8:BK (3.4) BS01 rna ? GO:0003735 ... P80376 25562208
    185150 4wt8:BL (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 25562208
    185151 4wt8:BM (3.4) BS01 rna ? GO:0000049 ... P80377 25562208
    185152 4wt8:BM (3.4) BS02 rna ? GO:0000049 ... P80377 25562208
    185153 4wt8:BM (3.4) BS03 rna ? GO:0000049 ... P80377 25562208
    185154 4wt8:BN (3.4) BS01 rna ? GO:0003735 ... P0DOY6 25562208
    185155 4wt8:BO (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 25562208
    185156 4wt8:BO (3.4) BS02 rna ? GO:0003735 ... Q5SJ76 25562208
    185157 4wt8:BP (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 25562208
    185158 4wt8:BR (3.4) BS01 rna ? GO:0003735 ... P0DOY7 25562208
    185159 4wt8:BS (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25562208
    185160 4wt8:BT (3.4) BS01 rna ? GO:0003723 ... Q5SHP2 25562208
    185161 4wt8:BU (3.4) BS01 rna ? GO:0003723 ... P80380 25562208
    185162 4wt8:C0 (3.4) BS01 rna ? GO:0003735 ... Q5SHR2 25562208
    185163 4wt8:C6 (3.4) BS01 rna ? GO:0003735 ... P80339 25562208
    185164 4wt8:C7 (3.4) BS01 rna ? GO:0003735 ... P35871 25562208
    185165 4wt8:C8 (3.4) BS01 rna ? GO:0003735 ... P80340 25562208
    185166 4wt8:C9 (3.4) BS01 rna ? GO:0003735 ... Q5SKU1 25562208
    185167 4wt8:CB (3.4) BS01 rna ? GO:0002181 ... P60405 25562208
    185168 4wt8:CC (3.4) BS01 rna ? GO:0003735 ... Q5SHN8 25562208
    185169 4wt8:CD (3.4) BS01 rna ? GO:0003735 ... Q5SHN9 25562208
    185170 4wt8:CE (3.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25562208
    185171 4wt8:CE (3.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25562208
    185172 4wt8:CE (3.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25562208
    185173 4wt8:CF (3.4) BS01 rna ? GO:0003735 ... P0DOY8 25562208
    185174 4wt8:CH (3.4) BS01 rna ? GO:0003735 ... P60494 25562208
    185175 4wt8:CI (3.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25562208
    185176 4wt8:CK (3.4) BS01 rna ? GO:0003735 ... Q5SHP6 25562208
    185177 4wt8:CL (3.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25562208
    185178 4wt8:CM (3.4) BS01 rna ? GO:0003729 ... P60488 25562208
    185179 4wt8:CN (3.4) BS01 rna ? GO:0003735 ... Q5SHP8 25562208
    185180 4wt8:CN (3.4) BS02 rna ? GO:0003735 ... Q5SHP8 25562208
    185181 4wt8:CO (3.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25562208
    185182 4wt8:CP (3.4) BS01 rna ? GO:0000049 ... P60489 25562208
    185183 4wt8:CP (3.4) BS02 rna ? GO:0000049 ... P60489 25562208
    185184 4wt8:CQ (3.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25562208
    185185 4wt8:CR (3.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25562208
    185186 4wt8:CR (3.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25562208
    185187 4wt8:CS (3.4) BS01 rna ? GO:0003735 ... P60490 25562208
    185188 4wt8:CS (3.4) BS02 rna ? GO:0003735 ... P60490 25562208
    185189 4wt8:CT (3.4) BS01 rna ? GO:0000027 ... P60491 25562208
    185190 4wt8:CU (3.4) BS01 rna ? GO:0003723 ... P60492 25562208
    185191 4wt8:CW (3.4) BS01 rna ? GO:0003735 ... Q5SHP3 25562208
    185192 4wt8:CX (3.4) BS01 rna ? GO:0000027 ... Q5SHP0 25562208
    185193 4wt8:CY (3.4) BS01 rna ? GO:0003723 ... Q5SHP9 25562208
    185194 4wt8:CZ (3.4) BS01 rna ? GO:0003735 ... Q5SHZ1 25562208
    185195 4wt8:CZ (3.4) BS02 rna ? GO:0003735 ... Q5SHZ1 25562208
    185196 4wt8:Ca (3.4) BS01 rna ? GO:0003735 ... P60493 25562208
    185197 4wt8:Ca (3.4) BS02 rna ? GO:0003735 ... P60493 25562208
    185198 4wt8:D0 (3.4) BS01 rna ? GO:0003735 ... Q5SHR2 25562208
    185199 4wt8:D6 (3.4) BS01 rna ? GO:0003735 ... P80339 25562208
    185200 4wt8:D7 (3.4) BS01 rna ? GO:0003735 ... P35871 25562208
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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