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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184801 4wsd:I8 (2.95) BS02 rna ? GO:0003735 ... P60493 26037619
    184802 4wsd:I8 (2.95) BS03 rna ? GO:0003735 ... P60493 26037619
    184803 4wsd:J5 (2.95) BS01 rna ? GO:0003735 ... P80339 26037619
    184804 4wsd:J8 (2.95) BS01 rna ? GO:0003735 ... P60494 26037619
    184805 4wsd:K5 (2.95) BS01 rna ? GO:0000049 ... P35871 26037619
    184806 4wsd:K8 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184807 4wsd:L5 (2.95) BS01 rna ? GO:0003735 ... P80340 26037619
    184808 4wsd:L8 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184809 4wsd:L8 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184810 4wsd:M5 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184811 4wsd:M8 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184812 4wsd:N8 (2.95) BS01 rna ? GO:0003735 ... P80339 26037619
    184813 4wsd:O8 (2.95) BS01 rna ? GO:0000049 ... P35871 26037619
    184814 4wsd:P8 (2.95) BS01 rna ? GO:0003735 ... P80340 26037619
    184815 4wsd:Q8 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184816 4wsj:A (1.64) BS01 3U3 ? GO:0004560 ... Q8A3I4 29142681 PDBbind: -logKd/Ki=7.33, IC50=46.8nM
    184817 4wsj:B (1.64) BS01 3U3 ? GO:0004560 ... Q8A3I4 29142681
    184818 4wsj:C (1.64) BS01 3U3 ? GO:0004560 ... Q8A3I4 29142681
    184819 4wsj:D (1.64) BS01 3U3 ? GO:0004560 ... Q8A3I4 29142681
    184820 4wsk:A (1.92) BS01 3U2 ? GO:0004560 ... Q8A3I4 29142681 PDBbind: -logKd/Ki=6.43, IC50=371.6nM
    184821 4wsk:B (1.92) BS01 3U2 ? GO:0004560 ... Q8A3I4 29142681
    184822 4wsk:C (1.92) BS01 3U2 ? GO:0004560 ... Q8A3I4 29142681
    184823 4wsm:11 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    184824 4wsm:11 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    184825 4wsm:11 (3.3) BS03 MG ? GO:0002181 ... P60405 26037619
    184826 4wsm:12 (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    184827 4wsm:15 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    184828 4wsm:19 (3.3) BS01 rna ? GO:0002181 ... P60405 26037619
    184829 4wsm:19 (3.3) BS02 rna ? GO:0002181 ... P60405 26037619
    184830 4wsm:19 (3.3) BS03 MG ? GO:0002181 ... P60405 26037619
    184831 4wsm:1A (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184832 4wsm:1E (3.3) BS01 rna ? GO:0003735 ... P80371 26037619
    184833 4wsm:1I (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184834 4wsm:21 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184835 4wsm:21 (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184836 4wsm:22 (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    184837 4wsm:25 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184838 4wsm:25 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184839 4wsm:29 (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184840 4wsm:29 (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184841 4wsm:2A (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    184842 4wsm:2A (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    184843 4wsm:2E (3.3) BS01 rna ? GO:0003676 ... P80372 26037619
    184844 4wsm:2I (3.3) BS01 rna ? GO:0003735 ... P80376 26037619
    184845 4wsm:2I (3.3) BS02 MG ? GO:0003735 ... P80376 26037619
    184846 4wsm:31 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184847 4wsm:31 (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    184848 4wsm:31 (3.3) BS03 MG ? GO:0003735 ... Q5SHN9 26037619
    184849 4wsm:32 (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    184850 4wsm:32 (3.3) BS02 ZN ? GO:0003723 ... P80373 26037619
    184851 4wsm:35 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184852 4wsm:39 (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184853 4wsm:39 (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    184854 4wsm:3A (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184855 4wsm:3E (3.3) BS01 rna ? GO:0003723 ... P80373 26037619
    184856 4wsm:3I (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184857 4wsm:41 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184858 4wsm:41 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184859 4wsm:41 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184860 4wsm:42 (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184861 4wsm:45 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    184862 4wsm:45 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    184863 4wsm:45 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    184864 4wsm:45 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    184865 4wsm:49 (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184866 4wsm:49 (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184867 4wsm:49 (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184868 4wsm:4A (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    184869 4wsm:4E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184870 4wsm:4I (3.3) BS01 rna ? GO:0000049 ... P80377 26037619
    184871 4wsm:4I (3.3) BS02 rna ? GO:0000049 ... P80377 26037619
    184872 4wsm:51 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184873 4wsm:52 (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184874 4wsm:55 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184875 4wsm:58 (3.3) BS01 rna ? GO:0003729 ... P60488 26037619
    184876 4wsm:59 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184877 4wsm:5A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184878 4wsm:5A (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    184879 4wsm:5E (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184880 4wsm:5E (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    184881 4wsm:5I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184882 4wsm:5I (3.3) BS02 ZN N/A GO:0003735 ... N/A 26037619
    184883 4wsm:61 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184884 4wsm:62 (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    184885 4wsm:65 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184886 4wsm:65 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184887 4wsm:68 (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184888 4wsm:68 (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184889 4wsm:69 (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184890 4wsm:69 (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    184891 4wsm:6A (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184892 4wsm:6E (3.3) BS01 rna ? GO:0000028 ... P17291 26037619
    184893 4wsm:6E (3.3) BS02 rna ? GO:0000028 ... P17291 26037619
    184894 4wsm:6I (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184895 4wsm:6I (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184896 4wsm:72 (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184897 4wsm:75 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    184898 4wsm:75 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    184899 4wsm:78 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184900 4wsm:7A (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184901 4wsm:7E (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184902 4wsm:7I (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184903 4wsm:82 (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    184904 4wsm:85 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    184905 4wsm:88 (3.3) BS01 rna ? GO:0000049 ... P60489 26037619
    184906 4wsm:88 (3.3) BS02 rna ? GO:0000049 ... P60489 26037619
    184907 4wsm:88 (3.3) BS03 rna ? GO:0000049 ... P60489 26037619
    184908 4wsm:88 (3.3) BS04 MG ? GO:0000049 ... P60489 26037619
    184909 4wsm:8A (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184910 4wsm:8E (3.3) BS01 rna ? GO:0000049 ... P80374 26037619
    184911 4wsm:8E (3.3) BS02 rna ? GO:0000049 ... P80374 26037619
    184912 4wsm:8I (3.3) BS01 rna N/A GO:0003735 ... N/A 26037619
    184913 4wsm:95 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    184914 4wsm:98 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184915 4wsm:9A (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184916 4wsm:9I (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184917 4wsm:A5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184918 4wsm:A5 (3.3) BS02 MG ? GO:0003735 ... Q5SHP3 26037619
    184919 4wsm:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184920 4wsm:A8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184921 4wsm:AA (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184922 4wsm:AI (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184923 4wsm:B5 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184924 4wsm:B8 (3.3) BS01 rna ? GO:0003735 ... P60490 26037619
    184925 4wsm:B8 (3.3) BS02 rna ? GO:0003735 ... P60490 26037619
    184926 4wsm:BA (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    184927 4wsm:BI (3.3) BS01 rna ? GO:0003723 ... P80380 26037619
    184928 4wsm:C5 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184929 4wsm:C8 (3.3) BS01 rna ? GO:0000027 ... P60491 26037619
    184930 4wsm:D5 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184931 4wsm:D5 (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    184932 4wsm:D8 (3.3) BS01 rna ? GO:0003723 ... P60492 26037619
    184933 4wsm:E5 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    184934 4wsm:E5 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    184935 4wsm:E5 (3.3) BS03 rna ? GO:0003735 ... P60493 26037619
    184936 4wsm:E8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184937 4wsm:F5 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    184938 4wsm:F8 (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184939 4wsm:G5 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184940 4wsm:G8 (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184941 4wsm:G8 (3.3) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    184942 4wsm:H5 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184943 4wsm:H5 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184944 4wsm:H8 (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184945 4wsm:H8 (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    184946 4wsm:I5 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184947 4wsm:I8 (3.3) BS01 rna ? GO:0003735 ... P60493 26037619
    184948 4wsm:I8 (3.3) BS02 rna ? GO:0003735 ... P60493 26037619
    184949 4wsm:I8 (3.3) BS03 rna ? GO:0003735 ... P60493 26037619
    184950 4wsm:J5 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    184951 4wsm:J8 (3.3) BS01 rna ? GO:0003735 ... P60494 26037619
    184952 4wsm:J8 (3.3) BS02 rna ? GO:0003735 ... P60494 26037619
    184953 4wsm:K8 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184954 4wsm:L5 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    184955 4wsm:L8 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184956 4wsm:L8 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184957 4wsm:M5 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184958 4wsm:M8 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184959 4wsm:M8 (3.3) BS02 rna ? GO:0003735 ... Q5SJE1 26037619
    184960 4wsm:N8 (3.3) BS01 rna ? GO:0003735 ... P80339 26037619
    184961 4wsm:P8 (3.3) BS01 rna ? GO:0003735 ... P80340 26037619
    184962 4wsm:Q8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184963 4wsn:E (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    184964 4wsn:M (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    184965 4wsn:U (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    184966 4wsn:c (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    184967 4wsn:k (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    184968 4wsn:s (5.5) BS01 ZN 3.4.-.- GO:0000338 ... Q92905 27029275
    184969 4wss:C (2.8) BS01 SIA ? GO:0019031 ... Q0A3A5 25673707
    184970 4wss:E (2.8) BS01 SIA ? GO:0019031 ... Q0A3A5 25673707
    184971 4wss:F (2.8) BS01 SIA ? GO:0019031 ... Q0A3A5 25673707
    184972 4wsu:A (2.7) BS01 SIA ? GO:0005886 ... A0A0J9X246 25673707
    184973 4wsu:C (2.7) BS01 SIA ? GO:0005886 ... A0A0J9X246 25673707
    184974 4wsv:A (3.1) BS01 SIA ? GO:0005886 ... A0A0J9X248 25673707
    184975 4wsv:E (3.1) BS01 SIA ? GO:0005886 ... A0A0J9X248 25673707
    184976 4wt1:11 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184977 4wt1:11 (3.05) BS02 rna ? GO:0002181 ... P60405 26037619
    184978 4wt1:12 (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184979 4wt1:15 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    184980 4wt1:19 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184981 4wt1:19 (3.05) BS02 MG ? GO:0002181 ... P60405 26037619
    184982 4wt1:1A (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184983 4wt1:1E (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184984 4wt1:1I (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184985 4wt1:21 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184986 4wt1:21 (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184987 4wt1:22 (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184988 4wt1:25 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184989 4wt1:25 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184990 4wt1:29 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184991 4wt1:2A (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184992 4wt1:2A (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184993 4wt1:2E (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184994 4wt1:2I (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184995 4wt1:2I (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184996 4wt1:31 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184997 4wt1:32 (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184998 4wt1:32 (3.05) BS02 ZN ? GO:0003723 ... P80373 26037619
    184999 4wt1:35 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    185000 4wt1:39 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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