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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184601 4wro:4I (3.05) BS03 rna ? GO:0000049 ... P80377 26037619
    184602 4wro:51 (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184603 4wro:58 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    184604 4wro:5E (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184605 4wro:5I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184606 4wro:5I (3.05) BS02 ZN N/A GO:0003735 ... N/A 26037619
    184607 4wro:61 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184608 4wro:68 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184609 4wro:68 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184610 4wro:6E (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    184611 4wro:6E (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    184612 4wro:6I (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184613 4wro:6I (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184614 4wro:78 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184615 4wro:7E (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184616 4wro:7I (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184617 4wro:88 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    184618 4wro:88 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    184619 4wro:88 (3.05) BS03 rna ? GO:0000049 ... P60489 26037619
    184620 4wro:8E (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    184621 4wro:8E (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    184622 4wro:8I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184623 4wro:98 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184624 4wro:9I (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184625 4wro:A8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184626 4wro:A8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184627 4wro:AI (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184628 4wro:B8 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    184629 4wro:B8 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    184630 4wro:BI (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    184631 4wro:C8 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    184632 4wro:D8 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    184633 4wro:E8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184634 4wro:F8 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184635 4wro:G8 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184636 4wro:G8 (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    184637 4wro:H8 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184638 4wro:I8 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    184639 4wro:I8 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    184640 4wro:J8 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    184641 4wro:K8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184642 4wro:L8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184643 4wro:L8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184644 4wro:M8 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184645 4wro:N8 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    184646 4wro:O8 (3.05) BS01 rna ? GO:0000049 ... P35871 26037619
    184647 4wro:P8 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    184648 4wro:Q8 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184649 4wrq:A (2.409) BS01 peptide ? GO:0000122 ... P63104 25909186
    184650 4wrq:B (2.409) BS01 peptide ? GO:0000122 ... P63104 25909186
    184651 4wrr:A (2.16) BS01 MG 2.7.1.107 GO:0004143 ... A0A6L8P1L2 N/A
    184652 4wrr:B (2.16) BS01 MG 2.7.1.107 GO:0004143 ... A0A6L8P1L2 N/A
    184653 4wrr:C (2.16) BS01 MG 2.7.1.107 GO:0004143 ... A0A6L8P1L2 N/A
    184654 4wrr:D (2.16) BS01 MG 2.7.1.107 GO:0004143 ... A0A6L8P1L2 N/A
    184655 4wrt:A (2.7) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 25409151
    184656 4wrt:A (2.7) BS02 rna 3.1.-.- GO:0003723 ... Q5V8Z9 25409151
    184657 4wrt:B (2.7) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 25409151
    184658 4wrt:B (2.7) BS02 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 25409151
    184659 4wrt:C (2.7) BS01 rna ? GO:0001172 ... Q5V8X3 25409151
    184660 4wru:A (1.24) BS01 URA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184661 4wrv:A (1.44) BS01 URA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184662 4wry:A (1.43) BS01 URF 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184663 4wrz:A (1.193) BS01 URF 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184664 4ws0:A (1.974) BS01 URF 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184665 4ws1:A (1.4) BS01 URF 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184666 4ws2:A (1.13) BS01 6UA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184667 4ws3:A (1.4) BS01 6UA 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184668 4ws4:A (1.18) BS01 5NU 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184669 4ws5:A (1.4) BS01 5NU 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184670 4ws6:A (1.1) BS01 WBU 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184671 4ws7:A (1.88) BS01 5UC 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184672 4ws8:A (1.4) BS01 TUL 3.2.2.27 GO:0004844 ... P9WFQ9 26143923
    184673 4wsa:A (3.4) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 25409151
    184674 4wsa:A (3.4) BS02 rna 3.1.-.- GO:0003723 ... Q5V8Z9 25409151
    184675 4wsa:B (3.4) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 25409151
    184676 4wsa:B (3.4) BS02 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 25409151
    184677 4wsa:C (3.4) BS01 rna ? GO:0001172 ... Q5V8X3 25409151
    184678 4wsb:B (2.65) BS01 rna 2.7.7.48 GO:0000166 ... H6QM91 25409151
    184679 4wsb:B (2.65) BS02 rna 2.7.7.48 GO:0000166 ... H6QM91 25409151
    184680 4wsb:C (2.65) BS01 rna ? GO:0003723 ... H6QM90 25409151
    184681 4wsd:11 (2.95) BS01 rna ? GO:0002181 ... P60405 26037619
    184682 4wsd:11 (2.95) BS02 rna ? GO:0002181 ... P60405 26037619
    184683 4wsd:12 (2.95) BS01 rna ? GO:0003735 ... P80371 26037619
    184684 4wsd:15 (2.95) BS01 rna ? GO:0003729 ... P60488 26037619
    184685 4wsd:19 (2.95) BS01 rna ? GO:0002181 ... P60405 26037619
    184686 4wsd:19 (2.95) BS02 rna ? GO:0002181 ... P60405 26037619
    184687 4wsd:1A (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184688 4wsd:1E (2.95) BS01 rna ? GO:0003735 ... P80371 26037619
    184689 4wsd:1I (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184690 4wsd:21 (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184691 4wsd:21 (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184692 4wsd:22 (2.95) BS01 rna ? GO:0003676 ... P80372 26037619
    184693 4wsd:25 (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184694 4wsd:25 (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184695 4wsd:29 (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184696 4wsd:29 (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184697 4wsd:2A (2.95) BS01 rna ? GO:0003735 ... P80376 26037619
    184698 4wsd:2A (2.95) BS02 MG ? GO:0003735 ... P80376 26037619
    184699 4wsd:2E (2.95) BS01 rna ? GO:0003676 ... P80372 26037619
    184700 4wsd:2I (2.95) BS01 rna ? GO:0003735 ... P80376 26037619
    184701 4wsd:2I (2.95) BS02 MG ? GO:0003735 ... P80376 26037619
    184702 4wsd:31 (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184703 4wsd:32 (2.95) BS01 rna ? GO:0003723 ... P80373 26037619
    184704 4wsd:32 (2.95) BS02 ZN ? GO:0003723 ... P80373 26037619
    184705 4wsd:35 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184706 4wsd:39 (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184707 4wsd:3A (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184708 4wsd:3E (2.95) BS01 rna ? GO:0003723 ... P80373 26037619
    184709 4wsd:3E (2.95) BS02 MG ? GO:0003723 ... P80373 26037619
    184710 4wsd:3I (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184711 4wsd:3I (2.95) BS02 MG ? GO:0000049 ... Q5SHN3 26037619
    184712 4wsd:41 (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184713 4wsd:41 (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184714 4wsd:41 (2.95) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184715 4wsd:41 (2.95) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    184716 4wsd:42 (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184717 4wsd:45 (2.95) BS01 rna ? GO:0000049 ... P60489 26037619
    184718 4wsd:45 (2.95) BS02 rna ? GO:0000049 ... P60489 26037619
    184719 4wsd:49 (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184720 4wsd:49 (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184721 4wsd:4A (2.95) BS01 rna ? GO:0000049 ... P80377 26037619
    184722 4wsd:4E (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184723 4wsd:4I (2.95) BS01 rna ? GO:0000049 ... P80377 26037619
    184724 4wsd:4I (2.95) BS02 rna ? GO:0000049 ... P80377 26037619
    184725 4wsd:4I (2.95) BS03 rna ? GO:0000049 ... P80377 26037619
    184726 4wsd:51 (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184727 4wsd:52 (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184728 4wsd:55 (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184729 4wsd:58 (2.95) BS01 rna ? GO:0003729 ... P60488 26037619
    184730 4wsd:59 (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184731 4wsd:5A (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184732 4wsd:5A (2.95) BS02 ZN N/A GO:0003735 ... N/A 26037619
    184733 4wsd:5E (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184734 4wsd:5I (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184735 4wsd:5I (2.95) BS02 MG N/A GO:0003735 ... N/A 26037619
    184736 4wsd:5I (2.95) BS03 ZN N/A GO:0003735 ... N/A 26037619
    184737 4wsd:61 (2.95) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184738 4wsd:62 (2.95) BS01 rna ? GO:0000028 ... P17291 26037619
    184739 4wsd:62 (2.95) BS02 rna ? GO:0000028 ... P17291 26037619
    184740 4wsd:65 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184741 4wsd:65 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184742 4wsd:68 (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184743 4wsd:68 (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184744 4wsd:69 (2.95) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184745 4wsd:69 (2.95) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    184746 4wsd:6A (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184747 4wsd:6A (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184748 4wsd:6E (2.95) BS01 rna ? GO:0000028 ... P17291 26037619
    184749 4wsd:6E (2.95) BS02 rna ? GO:0000028 ... P17291 26037619
    184750 4wsd:6I (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184751 4wsd:6I (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184752 4wsd:72 (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184753 4wsd:75 (2.95) BS01 rna ? GO:0003735 ... P60490 26037619
    184754 4wsd:75 (2.95) BS02 rna ? GO:0003735 ... P60490 26037619
    184755 4wsd:78 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184756 4wsd:7A (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184757 4wsd:7E (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184758 4wsd:7I (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184759 4wsd:82 (2.95) BS01 rna ? GO:0000049 ... P80374 26037619
    184760 4wsd:85 (2.95) BS01 rna ? GO:0000027 ... P60491 26037619
    184761 4wsd:88 (2.95) BS01 rna ? GO:0000049 ... P60489 26037619
    184762 4wsd:88 (2.95) BS02 rna ? GO:0000049 ... P60489 26037619
    184763 4wsd:88 (2.95) BS03 rna ? GO:0000049 ... P60489 26037619
    184764 4wsd:8A (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184765 4wsd:8E (2.95) BS01 rna ? GO:0000049 ... P80374 26037619
    184766 4wsd:8E (2.95) BS02 rna ? GO:0000049 ... P80374 26037619
    184767 4wsd:8I (2.95) BS01 rna N/A GO:0003735 ... N/A 26037619
    184768 4wsd:95 (2.95) BS01 rna ? GO:0003723 ... P60492 26037619
    184769 4wsd:98 (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184770 4wsd:9A (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184771 4wsd:9I (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184772 4wsd:A5 (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184773 4wsd:A8 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184774 4wsd:A8 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184775 4wsd:AA (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184776 4wsd:AI (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184777 4wsd:B5 (2.95) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184778 4wsd:B8 (2.95) BS01 rna ? GO:0003735 ... P60490 26037619
    184779 4wsd:B8 (2.95) BS02 rna ? GO:0003735 ... P60490 26037619
    184780 4wsd:BA (2.95) BS01 rna ? GO:0003723 ... P80380 26037619
    184781 4wsd:BI (2.95) BS01 rna ? GO:0003723 ... P80380 26037619
    184782 4wsd:C5 (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184783 4wsd:C5 (2.95) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    184784 4wsd:C8 (2.95) BS01 rna ? GO:0000027 ... P60491 26037619
    184785 4wsd:D5 (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184786 4wsd:D5 (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    184787 4wsd:D8 (2.95) BS01 rna ? GO:0003723 ... P60492 26037619
    184788 4wsd:E5 (2.95) BS01 rna ? GO:0003735 ... P60493 26037619
    184789 4wsd:E5 (2.95) BS02 rna ? GO:0003735 ... P60493 26037619
    184790 4wsd:E8 (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184791 4wsd:F5 (2.95) BS01 rna ? GO:0003735 ... P60494 26037619
    184792 4wsd:F8 (2.95) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184793 4wsd:G5 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184794 4wsd:G8 (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184795 4wsd:H5 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184796 4wsd:H5 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184797 4wsd:H8 (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184798 4wsd:H8 (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    184799 4wsd:I5 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184800 4wsd:I8 (2.95) BS01 rna ? GO:0003735 ... P60493 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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