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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184401 4wr6:L5 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    184402 4wr6:L8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184403 4wr6:L8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184404 4wr6:L8 (3.05) BS03 MG ? GO:0003735 ... Q5SHQ6 26037619
    184405 4wr6:M5 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184406 4wr6:M8 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184407 4wr6:N8 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    184408 4wr6:P8 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    184409 4wr6:Q8 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184410 4wr7:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542
    184411 4wr7:A (1.5) BS02 3TV 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 MOAD: Kd=0.002nM
    PDBbind: -logKd/Ki=11.70, Kd=0.002nM
    BindingDB: Kd=0.033nM
    184412 4wr7:B (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542
    184413 4wr7:B (1.5) BS02 3TV 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 26079542 MOAD: Kd=0.002nM
    BindingDB: Kd=0.033nM
    184414 4wr8:B (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 PDBbind: -logKd/Ki=6.23, Ki=0.59uM
    BindingDB: Ki=590nM, Kd=260nM
    184415 4wr8:C (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 PDBbind: -logKd/Ki=6.23, Ki=0.59uM
    BindingDB: Ki=590nM, Kd=260nM
    184416 4wr8:E (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184417 4wr8:F (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184418 4wr8:H (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184419 4wr8:I (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184420 4wr8:K (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184421 4wr8:L (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184422 4wr8:N (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184423 4wr8:O (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184424 4wr8:Q (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184425 4wr8:R (2.6) BS01 3TX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 BindingDB: Ki=590nM, Kd=260nM
    184426 4wra:11 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184427 4wra:11 (3.05) BS02 rna ? GO:0002181 ... P60405 26037619
    184428 4wra:12 (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184429 4wra:15 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    184430 4wra:19 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184431 4wra:19 (3.05) BS02 rna ? GO:0002181 ... P60405 26037619
    184432 4wra:19 (3.05) BS03 MG ? GO:0002181 ... P60405 26037619
    184433 4wra:1A (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184434 4wra:1E (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184435 4wra:1I (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184436 4wra:21 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184437 4wra:21 (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184438 4wra:22 (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184439 4wra:25 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184440 4wra:25 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184441 4wra:29 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184442 4wra:29 (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184443 4wra:29 (3.05) BS03 MG ? GO:0003735 ... Q5SHN8 26037619
    184444 4wra:2A (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184445 4wra:2A (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184446 4wra:2E (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184447 4wra:2I (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184448 4wra:2I (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184449 4wra:31 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184450 4wra:31 (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    184451 4wra:32 (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184452 4wra:32 (3.05) BS02 ZN ? GO:0003723 ... P80373 26037619
    184453 4wra:35 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184454 4wra:39 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184455 4wra:39 (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    184456 4wra:3A (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184457 4wra:3E (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184458 4wra:3E (3.05) BS02 MG ? GO:0003723 ... P80373 26037619
    184459 4wra:3E (3.05) BS03 ZN ? GO:0003723 ... P80373 26037619
    184460 4wra:3I (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184461 4wra:3I (3.05) BS02 MG ? GO:0000049 ... Q5SHN3 26037619
    184462 4wra:41 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184463 4wra:41 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184464 4wra:41 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184465 4wra:41 (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    184466 4wra:42 (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184467 4wra:45 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    184468 4wra:45 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    184469 4wra:49 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184470 4wra:49 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184471 4wra:49 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184472 4wra:4A (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    184473 4wra:4A (3.05) BS02 rna ? GO:0000049 ... P80377 26037619
    184474 4wra:4E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184475 4wra:4I (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    184476 4wra:51 (3.05) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    184477 4wra:52 (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184478 4wra:55 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184479 4wra:58 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    184480 4wra:59 (3.05) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    184481 4wra:5A (3.05) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    184482 4wra:5A (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    184483 4wra:5E (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184484 4wra:5I (3.05) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    184485 4wra:5I (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    184486 4wra:61 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184487 4wra:62 (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    184488 4wra:62 (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    184489 4wra:65 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184490 4wra:65 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184491 4wra:68 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184492 4wra:68 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184493 4wra:69 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184494 4wra:69 (3.05) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    184495 4wra:6A (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184496 4wra:6A (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184497 4wra:6E (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    184498 4wra:6E (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    184499 4wra:6I (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184500 4wra:6I (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184501 4wra:72 (3.05) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    184502 4wra:75 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    184503 4wra:75 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    184504 4wra:78 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184505 4wra:7A (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184506 4wra:7E (3.05) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    184507 4wra:7I (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184508 4wra:82 (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    184509 4wra:82 (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    184510 4wra:85 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    184511 4wra:88 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    184512 4wra:88 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    184513 4wra:88 (3.05) BS03 rna ? GO:0000049 ... P60489 26037619
    184514 4wra:88 (3.05) BS04 MG ? GO:0000049 ... P60489 26037619
    184515 4wra:8A (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184516 4wra:8E (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    184517 4wra:8E (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    184518 4wra:8I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184519 4wra:95 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    184520 4wra:98 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184521 4wra:9A (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184522 4wra:9I (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184523 4wra:A5 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184524 4wra:A8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184525 4wra:A8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184526 4wra:AA (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184527 4wra:AI (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184528 4wra:B5 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184529 4wra:B8 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    184530 4wra:B8 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    184531 4wra:BA (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    184532 4wra:BI (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    184533 4wra:C5 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184534 4wra:C5 (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    184535 4wra:C8 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    184536 4wra:D5 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184537 4wra:D5 (3.05) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    184538 4wra:D8 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    184539 4wra:E5 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    184540 4wra:E5 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    184541 4wra:E8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184542 4wra:F5 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    184543 4wra:F8 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184544 4wra:G5 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184545 4wra:G8 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184546 4wra:G8 (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    184547 4wra:H5 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184548 4wra:H5 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184549 4wra:H8 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184550 4wra:I5 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184551 4wra:I8 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    184552 4wra:I8 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    184553 4wra:J5 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    184554 4wra:J8 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    184555 4wra:K8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184556 4wra:L5 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    184557 4wra:L8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184558 4wra:L8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184559 4wra:M5 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184560 4wra:M8 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184561 4wra:N8 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    184562 4wra:P8 (3.05) BS01 rna ? GO:0003735 ... P80340 26037619
    184563 4wra:Q8 (3.05) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    184564 4wrb:A (1.81) BS01 3TW 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 MOAD: Ki=0.65uM
    PDBbind: -logKd/Ki=6.19, Ki=0.65uM
    BindingDB: Ki=570nM
    184565 4wrb:C (1.81) BS01 3TW 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 25697265 PDBbind: -logKd/Ki=6.19, Ki=0.65uM
    BindingDB: Ki=570nM
    184566 4wrh:A (1.6) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 N/A
    184567 4wrh:A (1.6) BS02 YY2 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 N/A
    184568 4wrh:A (1.6) BS03 YY1 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 N/A
    184569 4wrn:A (3.2) BS01 GLC ? GO:0008643 ... P07911
    P0AEY0    		 26811476
    184570 4wrn:A (3.2) BS02 GLC ? GO:0008643 ... P07911
    P0AEY0    		 26811476
    184571 4wrn:A (3.2) BS03 ZN ? GO:0008643 ... P07911
    P0AEY0    		 26811476
    184572 4wrn:B (3.2) BS01 GLC ? GO:0008643 ... P07911
    P0AEY0    		 26811476
    184573 4wrn:B (3.2) BS02 GLC ? GO:0008643 ... P07911
    P0AEY0    		 26811476
    184574 4wrn:B (3.2) BS03 ZN ? GO:0008643 ... P07911
    P0AEY0    		 26811476
    184575 4wro:11 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184576 4wro:11 (3.05) BS02 MG ? GO:0002181 ... P60405 26037619
    184577 4wro:12 (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184578 4wro:1E (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184579 4wro:1I (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184580 4wro:21 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184581 4wro:21 (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184582 4wro:22 (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184583 4wro:2E (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184584 4wro:2I (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184585 4wro:2I (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184586 4wro:31 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184587 4wro:32 (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184588 4wro:32 (3.05) BS02 ZN ? GO:0003723 ... P80373 26037619
    184589 4wro:3E (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184590 4wro:3E (3.05) BS02 MG ? GO:0003723 ... P80373 26037619
    184591 4wro:3E (3.05) BS03 MG ? GO:0003723 ... P80373 26037619
    184592 4wro:3I (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184593 4wro:41 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184594 4wro:41 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184595 4wro:41 (3.05) BS03 MG ? GO:0000049 ... Q5SHQ0 26037619
    184596 4wro:41 (3.05) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    184597 4wro:4E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184598 4wro:4E (3.05) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    184599 4wro:4I (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    184600 4wro:4I (3.05) BS02 rna ? GO:0000049 ... P80377 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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