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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184201 4wqy:CE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    184202 4wqy:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    184203 4wqy:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    184204 4wqy:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    184205 4wqy:CG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    184206 4wqy:CG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    184207 4wqy:CG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 25594181
    184208 4wqy:CG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    184209 4wqy:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184210 4wqy:CK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    184211 4wqy:CL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    184212 4wqy:CN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    184213 4wqy:CO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    184214 4wqy:CO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    184215 4wqy:CP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    184216 4wqy:CQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    184217 4wqy:CQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    184218 4wqy:CQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    184219 4wqy:CR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    184220 4wqy:CS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    184221 4wqy:CS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    184222 4wqy:CT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    184223 4wqy:CT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    184224 4wqy:CU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    184225 4wqy:CU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    184226 4wqy:CU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    184227 4wqy:CV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    184228 4wqy:CV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    184229 4wqy:CV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    184230 4wqy:CW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    184231 4wqy:CW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    184232 4wqy:CX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    184233 4wqy:CY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    184234 4wqy:CY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    184235 4wqy:CZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    184236 4wqy:CZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    184237 4wqy:DB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    184238 4wqy:DC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    184239 4wqy:DD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    184240 4wqy:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    184241 4wqy:DE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    184242 4wqy:DE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    184243 4wqy:DE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25594181
    184244 4wqy:DF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    184245 4wqy:DF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25594181
    184246 4wqy:DG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    184247 4wqy:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184248 4wqy:DI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    184249 4wqy:DI (2.8) BS02 rna ? GO:0000049 ... P80374 25594181
    184250 4wqy:DJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    184251 4wqy:DK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    184252 4wqy:DL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    184253 4wqy:DL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25594181
    184254 4wqy:DM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    184255 4wqy:DN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184256 4wqy:DN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    184257 4wqy:DO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    184258 4wqy:DO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    184259 4wqy:DP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    184260 4wqy:DQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184261 4wqy:DR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    184262 4wqy:DS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    184263 4wqy:DT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    184264 4wqy:DT (2.8) BS02 MG ? GO:0003723 ... P80380 25594181
    184265 4wqy:DZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184266 4wqy:DZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184267 4wqy:DZ (2.8) BS03 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184268 4wqy:DZ (2.8) BS04 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184269 4wqy:DZ (2.8) BS05 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184270 4wr2:A (1.7) BS01 CA 3.2.-.- GO:0005829 ... A3QAS1 N/A
    184271 4wr3:A (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P0A6B4 27474741
    184272 4wr3:B (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P0A6B4 27474741
    184273 4wr3:C (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P0A6B4 27474741
    184274 4wr3:D (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P0A6B4 27474741
    184275 4wr6:11 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184276 4wr6:12 (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184277 4wr6:15 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    184278 4wr6:19 (3.05) BS01 rna ? GO:0002181 ... P60405 26037619
    184279 4wr6:19 (3.05) BS02 rna ? GO:0002181 ... P60405 26037619
    184280 4wr6:1A (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184281 4wr6:1E (3.05) BS01 rna ? GO:0003735 ... P80371 26037619
    184282 4wr6:1I (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    184283 4wr6:21 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184284 4wr6:21 (3.05) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    184285 4wr6:22 (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184286 4wr6:22 (3.05) BS02 rna ? GO:0003676 ... P80372 26037619
    184287 4wr6:25 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184288 4wr6:25 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184289 4wr6:29 (3.05) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    184290 4wr6:2A (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184291 4wr6:2A (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184292 4wr6:2E (3.05) BS01 rna ? GO:0003676 ... P80372 26037619
    184293 4wr6:2I (3.05) BS01 rna ? GO:0003735 ... P80376 26037619
    184294 4wr6:2I (3.05) BS02 MG ? GO:0003735 ... P80376 26037619
    184295 4wr6:31 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184296 4wr6:31 (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    184297 4wr6:32 (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184298 4wr6:32 (3.05) BS02 ZN ? GO:0003723 ... P80373 26037619
    184299 4wr6:35 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184300 4wr6:39 (3.05) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    184301 4wr6:39 (3.05) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    184302 4wr6:3A (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184303 4wr6:3E (3.05) BS01 rna ? GO:0003723 ... P80373 26037619
    184304 4wr6:3I (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    184305 4wr6:41 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184306 4wr6:41 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184307 4wr6:41 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184308 4wr6:42 (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184309 4wr6:42 (3.05) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    184310 4wr6:45 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    184311 4wr6:45 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    184312 4wr6:49 (3.05) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    184313 4wr6:49 (3.05) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    184314 4wr6:49 (3.05) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    184315 4wr6:4A (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    184316 4wr6:4A (3.05) BS02 rna ? GO:0000049 ... P80377 26037619
    184317 4wr6:4E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    184318 4wr6:4E (3.05) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    184319 4wr6:4I (3.05) BS01 rna ? GO:0000049 ... P80377 26037619
    184320 4wr6:4I (3.05) BS02 rna ? GO:0000049 ... P80377 26037619
    184321 4wr6:4I (3.05) BS03 rna ? GO:0000049 ... P80377 26037619
    184322 4wr6:51 (3.05) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    184323 4wr6:52 (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184324 4wr6:55 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184325 4wr6:58 (3.05) BS01 rna ? GO:0003729 ... P60488 26037619
    184326 4wr6:59 (3.05) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    184327 4wr6:5A (3.05) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    184328 4wr6:5A (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    184329 4wr6:5E (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    184330 4wr6:5I (3.05) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    184331 4wr6:5I (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    184332 4wr6:61 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184333 4wr6:62 (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    184334 4wr6:62 (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    184335 4wr6:65 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184336 4wr6:65 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184337 4wr6:68 (3.05) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    184338 4wr6:68 (3.05) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    184339 4wr6:69 (3.05) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    184340 4wr6:69 (3.05) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    184341 4wr6:6A (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184342 4wr6:6A (3.05) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    184343 4wr6:6E (3.05) BS01 rna ? GO:0000028 ... P17291 26037619
    184344 4wr6:6E (3.05) BS02 rna ? GO:0000028 ... P17291 26037619
    184345 4wr6:6I (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    184346 4wr6:72 (3.05) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    184347 4wr6:75 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    184348 4wr6:75 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    184349 4wr6:78 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    184350 4wr6:7A (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184351 4wr6:7E (3.05) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    184352 4wr6:7I (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    184353 4wr6:82 (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    184354 4wr6:82 (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    184355 4wr6:85 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    184356 4wr6:88 (3.05) BS01 rna ? GO:0000049 ... P60489 26037619
    184357 4wr6:88 (3.05) BS02 rna ? GO:0000049 ... P60489 26037619
    184358 4wr6:88 (3.05) BS03 rna ? GO:0000049 ... P60489 26037619
    184359 4wr6:8A (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184360 4wr6:8E (3.05) BS01 rna ? GO:0000049 ... P80374 26037619
    184361 4wr6:8E (3.05) BS02 rna ? GO:0000049 ... P80374 26037619
    184362 4wr6:8I (3.05) BS01 rna N/A GO:0003735 ... N/A 26037619
    184363 4wr6:95 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    184364 4wr6:98 (3.05) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    184365 4wr6:9A (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184366 4wr6:9I (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    184367 4wr6:A5 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184368 4wr6:A8 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    184369 4wr6:A8 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    184370 4wr6:AA (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184371 4wr6:AI (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    184372 4wr6:B5 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184373 4wr6:B8 (3.05) BS01 rna ? GO:0003735 ... P60490 26037619
    184374 4wr6:B8 (3.05) BS02 rna ? GO:0003735 ... P60490 26037619
    184375 4wr6:BA (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    184376 4wr6:BI (3.05) BS01 rna ? GO:0003723 ... P80380 26037619
    184377 4wr6:C5 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184378 4wr6:C5 (3.05) BS02 MG ? GO:0003723 ... Q5SHP9 26037619
    184379 4wr6:C5 (3.05) BS03 ZN ? GO:0003723 ... Q5SHP9 26037619
    184380 4wr6:C8 (3.05) BS01 rna ? GO:0000027 ... P60491 26037619
    184381 4wr6:D5 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184382 4wr6:D5 (3.05) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    184383 4wr6:D8 (3.05) BS01 rna ? GO:0003723 ... P60492 26037619
    184384 4wr6:E5 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    184385 4wr6:E5 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    184386 4wr6:E8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    184387 4wr6:F5 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    184388 4wr6:F8 (3.05) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    184389 4wr6:G5 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    184390 4wr6:G8 (3.05) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    184391 4wr6:G8 (3.05) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    184392 4wr6:H5 (3.05) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    184393 4wr6:H5 (3.05) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    184394 4wr6:H8 (3.05) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    184395 4wr6:I5 (3.05) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    184396 4wr6:I8 (3.05) BS01 rna ? GO:0003735 ... P60493 26037619
    184397 4wr6:I8 (3.05) BS02 rna ? GO:0003735 ... P60493 26037619
    184398 4wr6:J5 (3.05) BS01 rna ? GO:0003735 ... P80339 26037619
    184399 4wr6:J8 (3.05) BS01 rna ? GO:0003735 ... P60494 26037619
    184400 4wr6:K8 (3.05) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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