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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184001 4wqu:CQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    184002 4wqu:CQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    184003 4wqu:CQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    184004 4wqu:CR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    184005 4wqu:CS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    184006 4wqu:CS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    184007 4wqu:CT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    184008 4wqu:CT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    184009 4wqu:CU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    184010 4wqu:CU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    184011 4wqu:CU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    184012 4wqu:CV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    184013 4wqu:CV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    184014 4wqu:CV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    184015 4wqu:CW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    184016 4wqu:CW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    184017 4wqu:CX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    184018 4wqu:CY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    184019 4wqu:CY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    184020 4wqu:CZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    184021 4wqu:CZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    184022 4wqu:DB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    184023 4wqu:DC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    184024 4wqu:DD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    184025 4wqu:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    184026 4wqu:DE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    184027 4wqu:DE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    184028 4wqu:DF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    184029 4wqu:DF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25594181
    184030 4wqu:DG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    184031 4wqu:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184032 4wqu:DI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    184033 4wqu:DJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    184034 4wqu:DJ (2.8) BS02 MG ? GO:0000049 ... Q5SHN7 25594181
    184035 4wqu:DK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    184036 4wqu:DL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    184037 4wqu:DL (2.8) BS02 peptide ? GO:0000049 ... Q5SHN3 25594181
    184038 4wqu:DL (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 25594181
    184039 4wqu:DM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    184040 4wqu:DN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184041 4wqu:DN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    184042 4wqu:DO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    184043 4wqu:DO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    184044 4wqu:DP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    184045 4wqu:DQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184046 4wqu:DR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    184047 4wqu:DS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    184048 4wqu:DT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    184049 4wqu:DZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184050 4wqu:DZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184051 4wqu:DZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184052 4wqy:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    184053 4wqy:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    184054 4wqy:A0 (2.8) BS03 MG ? GO:0003735 ... P60493 25594181
    184055 4wqy:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    184056 4wqy:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    184057 4wqy:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    184058 4wqy:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    184059 4wqy:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    184060 4wqy:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    184061 4wqy:A4 (2.8) BS03 MG ? GO:0003735 ... Q5SJE1 25594181
    184062 4wqy:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    184063 4wqy:A5 (2.8) BS02 MG ? GO:0003735 ... P80339 25594181
    184064 4wqy:A5 (2.8) BS03 ZN ? GO:0003735 ... P80339 25594181
    184065 4wqy:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    184066 4wqy:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    184067 4wqy:A6 (2.8) BS03 MG ? GO:0000049 ... P35871 25594181
    184068 4wqy:A6 (2.8) BS04 ZN ? GO:0000049 ... P35871 25594181
    184069 4wqy:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    184070 4wqy:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    184071 4wqy:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    184072 4wqy:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    184073 4wqy:A7 (2.8) BS05 MG ? GO:0003735 ... P80340 25594181
    184074 4wqy:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    184075 4wqy:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    184076 4wqy:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    184077 4wqy:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    184078 4wqy:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    184079 4wqy:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    184080 4wqy:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    184081 4wqy:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    184082 4wqy:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    184083 4wqy:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    184084 4wqy:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    184085 4wqy:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    184086 4wqy:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    184087 4wqy:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    184088 4wqy:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    184089 4wqy:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    184090 4wqy:AE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    184091 4wqy:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    184092 4wqy:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    184093 4wqy:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    184094 4wqy:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    184095 4wqy:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    184096 4wqy:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    184097 4wqy:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    184098 4wqy:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    184099 4wqy:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    184100 4wqy:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    184101 4wqy:AG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 25594181
    184102 4wqy:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    184103 4wqy:AG (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 25594181
    184104 4wqy:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184105 4wqy:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    184106 4wqy:AK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    184107 4wqy:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    184108 4wqy:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    184109 4wqy:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    184110 4wqy:AN (2.8) BS03 MG ? GO:0003729 ... P60488 25594181
    184111 4wqy:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    184112 4wqy:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    184113 4wqy:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    184114 4wqy:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    184115 4wqy:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    184116 4wqy:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    184117 4wqy:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    184118 4wqy:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    184119 4wqy:AQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    184120 4wqy:AQ (2.8) BS04 MG ? GO:0000049 ... P60489 25594181
    184121 4wqy:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    184122 4wqy:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    184123 4wqy:AR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25594181
    184124 4wqy:AR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25594181
    184125 4wqy:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    184126 4wqy:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    184127 4wqy:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    184128 4wqy:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    184129 4wqy:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    184130 4wqy:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    184131 4wqy:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    184132 4wqy:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    184133 4wqy:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    184134 4wqy:AU (2.8) BS06 MG ? GO:0000027 ... P60491 25594181
    184135 4wqy:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    184136 4wqy:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    184137 4wqy:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    184138 4wqy:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    184139 4wqy:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    184140 4wqy:AV (2.8) BS06 MG ? GO:0003723 ... P60492 25594181
    184141 4wqy:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    184142 4wqy:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    184143 4wqy:AW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25594181
    184144 4wqy:AX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    184145 4wqy:AX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25594181
    184146 4wqy:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    184147 4wqy:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    184148 4wqy:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    184149 4wqy:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    184150 4wqy:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    184151 4wqy:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    184152 4wqy:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    184153 4wqy:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    184154 4wqy:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    184155 4wqy:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    184156 4wqy:BG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    184157 4wqy:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184158 4wqy:BI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    184159 4wqy:BJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    184160 4wqy:BK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    184161 4wqy:BK (2.8) BS02 MG ? GO:0003735 ... P80376 25594181
    184162 4wqy:BL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    184163 4wqy:BM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    184164 4wqy:BN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184165 4wqy:BN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    184166 4wqy:BN (2.8) BS03 MG N/A GO:0003735 ... N/A 25594181
    184167 4wqy:BO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    184168 4wqy:BO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    184169 4wqy:BP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    184170 4wqy:BQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    184171 4wqy:BR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    184172 4wqy:BS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    184173 4wqy:BT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    184174 4wqy:BZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184175 4wqy:BZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184176 4wqy:BZ (2.8) BS03 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184177 4wqy:BZ (2.8) BS04 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184178 4wqy:BZ (2.8) BS05 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    184179 4wqy:C0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    184180 4wqy:C0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    184181 4wqy:C1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    184182 4wqy:C2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    184183 4wqy:C3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    184184 4wqy:C3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    184185 4wqy:C3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    184186 4wqy:C4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    184187 4wqy:C4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    184188 4wqy:C5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    184189 4wqy:C5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    184190 4wqy:C6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    184191 4wqy:C6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25594181
    184192 4wqy:C7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    184193 4wqy:C8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    184194 4wqy:C9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    184195 4wqy:C9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    184196 4wqy:CC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    184197 4wqy:CD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    184198 4wqy:CD (2.8) BS02 MG ? GO:0002181 ... P60405 25594181
    184199 4wqy:CD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    184200 4wqy:CE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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