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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183801 4wqr:J5 (3.15) BS01 rna ? GO:0003735 ... P80339 26037619
    183802 4wqr:J8 (3.15) BS01 rna ? GO:0003735 ... P60494 26037619
    183803 4wqr:J8 (3.15) BS02 rna ? GO:0003735 ... P60494 26037619
    183804 4wqr:K5 (3.15) BS01 rna ? GO:0000049 ... P35871 26037619
    183805 4wqr:K8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    183806 4wqr:L5 (3.15) BS01 rna ? GO:0003735 ... P80340 26037619
    183807 4wqr:L8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    183808 4wqr:L8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    183809 4wqr:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    183810 4wqr:M8 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    183811 4wqr:N8 (3.15) BS01 rna ? GO:0003735 ... P80339 26037619
    183812 4wqr:O8 (3.15) BS01 rna ? GO:0000049 ... P35871 26037619
    183813 4wqr:P8 (3.15) BS01 rna ? GO:0003735 ... P80340 26037619
    183814 4wqr:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    183815 4wqs:C (4.306) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    183816 4wqs:C (4.306) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    183817 4wqs:C (4.306) BS03 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    183818 4wqs:D (4.306) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183819 4wqs:D (4.306) BS02 rna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183820 4wqs:D (4.306) BS03 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183821 4wqs:D (4.306) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183822 4wqs:D (4.306) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183823 4wqs:M (4.306) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    183824 4wqs:M (4.306) BS02 rna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    183825 4wqs:M (4.306) BS03 dna 2.7.7.6 GO:0000428 ... Q8RQE9 25601758
    183826 4wqs:N (4.306) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183827 4wqs:N (4.306) BS02 rna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183828 4wqs:N (4.306) BS03 dna 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183829 4wqs:N (4.306) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183830 4wqt:D (4.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183831 4wqt:D (4.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183832 4wqt:I (4.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183833 4wqt:I (4.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183834 4wqt:N (4.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183835 4wqt:N (4.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 25601758
    183836 4wqu:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    183837 4wqu:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    183838 4wqu:A0 (2.8) BS03 MG ? GO:0003735 ... P60493 25594181
    183839 4wqu:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    183840 4wqu:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    183841 4wqu:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    183842 4wqu:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    183843 4wqu:A3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    183844 4wqu:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    183845 4wqu:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    183846 4wqu:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    183847 4wqu:A5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    183848 4wqu:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    183849 4wqu:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    183850 4wqu:A6 (2.8) BS03 ZN ? GO:0000049 ... P35871 25594181
    183851 4wqu:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    183852 4wqu:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    183853 4wqu:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    183854 4wqu:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    183855 4wqu:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    183856 4wqu:A8 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 25594181
    183857 4wqu:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    183858 4wqu:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    183859 4wqu:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    183860 4wqu:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    183861 4wqu:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    183862 4wqu:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    183863 4wqu:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    183864 4wqu:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    183865 4wqu:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    183866 4wqu:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    183867 4wqu:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    183868 4wqu:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    183869 4wqu:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    183870 4wqu:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    183871 4wqu:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    183872 4wqu:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    183873 4wqu:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    183874 4wqu:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    183875 4wqu:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    183876 4wqu:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    183877 4wqu:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    183878 4wqu:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    183879 4wqu:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    183880 4wqu:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    183881 4wqu:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    183882 4wqu:AG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 25594181
    183883 4wqu:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    183884 4wqu:AG (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 25594181
    183885 4wqu:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183886 4wqu:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    183887 4wqu:AK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    183888 4wqu:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    183889 4wqu:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    183890 4wqu:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    183891 4wqu:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    183892 4wqu:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    183893 4wqu:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    183894 4wqu:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    183895 4wqu:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    183896 4wqu:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    183897 4wqu:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    183898 4wqu:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    183899 4wqu:AQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    183900 4wqu:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    183901 4wqu:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    183902 4wqu:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    183903 4wqu:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    183904 4wqu:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    183905 4wqu:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    183906 4wqu:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    183907 4wqu:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    183908 4wqu:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    183909 4wqu:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    183910 4wqu:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    183911 4wqu:AU (2.8) BS06 MG ? GO:0000027 ... P60491 25594181
    183912 4wqu:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    183913 4wqu:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    183914 4wqu:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    183915 4wqu:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    183916 4wqu:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    183917 4wqu:AV (2.8) BS06 MG ? GO:0003723 ... P60492 25594181
    183918 4wqu:AV (2.8) BS07 MG ? GO:0003723 ... P60492 25594181
    183919 4wqu:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    183920 4wqu:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    183921 4wqu:AX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    183922 4wqu:AX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25594181
    183923 4wqu:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    183924 4wqu:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    183925 4wqu:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    183926 4wqu:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    183927 4wqu:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    183928 4wqu:BB (2.8) BS02 MG ? GO:0003735 ... P80371 25594181
    183929 4wqu:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    183930 4wqu:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    183931 4wqu:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    183932 4wqu:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    183933 4wqu:BE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    183934 4wqu:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    183935 4wqu:BG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    183936 4wqu:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183937 4wqu:BI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    183938 4wqu:BI (2.8) BS02 rna ? GO:0000049 ... P80374 25594181
    183939 4wqu:BJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    183940 4wqu:BK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    183941 4wqu:BK (2.8) BS02 MG ? GO:0003735 ... P80376 25594181
    183942 4wqu:BL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    183943 4wqu:BL (2.8) BS02 peptide ? GO:0000049 ... Q5SHN3 25594181
    183944 4wqu:BL (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 25594181
    183945 4wqu:BM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    183946 4wqu:BM (2.8) BS02 rna ? GO:0000049 ... P80377 25594181
    183947 4wqu:BM (2.8) BS03 MG ? GO:0000049 ... P80377 25594181
    183948 4wqu:BN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183949 4wqu:BN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    183950 4wqu:BN (2.8) BS03 MG N/A GO:0003735 ... N/A 25594181
    183951 4wqu:BO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    183952 4wqu:BO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    183953 4wqu:BP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    183954 4wqu:BQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183955 4wqu:BR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    183956 4wqu:BS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    183957 4wqu:BT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    183958 4wqu:BT (2.8) BS02 MG ? GO:0003723 ... P80380 25594181
    183959 4wqu:BZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183960 4wqu:BZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183961 4wqu:BZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183962 4wqu:C0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    183963 4wqu:C1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    183964 4wqu:C2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    183965 4wqu:C3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    183966 4wqu:C3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    183967 4wqu:C3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    183968 4wqu:C4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    183969 4wqu:C4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    183970 4wqu:C5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    183971 4wqu:C5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    183972 4wqu:C6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    183973 4wqu:C6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25594181
    183974 4wqu:C7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    183975 4wqu:C8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    183976 4wqu:C9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    183977 4wqu:C9 (2.8) BS02 MG ? GO:0003735 ... Q5SHR2 25594181
    183978 4wqu:C9 (2.8) BS03 ZN ? GO:0003735 ... Q5SHR2 25594181
    183979 4wqu:CC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    183980 4wqu:CD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    183981 4wqu:CD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    183982 4wqu:CD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    183983 4wqu:CD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    183984 4wqu:CD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    183985 4wqu:CE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    183986 4wqu:CE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    183987 4wqu:CE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25594181
    183988 4wqu:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    183989 4wqu:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    183990 4wqu:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    183991 4wqu:CF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    183992 4wqu:CG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    183993 4wqu:CG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    183994 4wqu:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183995 4wqu:CK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    183996 4wqu:CL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    183997 4wqu:CN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    183998 4wqu:CO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    183999 4wqu:CO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    184000 4wqu:CP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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