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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183401 4wq1:I8 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    183402 4wq1:I8 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    183403 4wq1:J5 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    183404 4wq1:J8 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    183405 4wq1:K5 (3.1) BS01 rna ? GO:0003735 ... P35871 26037619
    183406 4wq1:K8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    183407 4wq1:K8 (3.1) BS02 MG ? GO:0003735 ... Q5SHP6 26037619
    183408 4wq1:L5 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    183409 4wq1:L8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    183410 4wq1:L8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    183411 4wq1:M5 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    183412 4wq1:M8 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    183413 4wq1:M8 (3.1) BS02 rna ? GO:0003735 ... Q5SJE1 26037619
    183414 4wq1:N8 (3.1) BS01 rna ? GO:0003735 ... P80339 26037619
    183415 4wq1:O8 (3.1) BS01 rna ? GO:0003735 ... P35871 26037619
    183416 4wq1:P8 (3.1) BS01 rna ? GO:0003735 ... P80340 26037619
    183417 4wq1:Q8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 26037619
    183418 4wq4:A (2.33) BS01 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    183419 4wq4:A (2.33) BS02 ATP 2.3.1.234 GO:0000287 ... P05852 25578970
    183420 4wq4:B (2.33) BS01 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    183421 4wq4:B (2.33) BS02 ATP 2.3.1.234 GO:0000287 ... P05852 25578970
    183422 4wq5:A (2.33) BS01 MG 2.3.1.234 GO:0000287 ... P05852 25578970
    183423 4wq5:A (2.33) BS02 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    183424 4wq5:A (2.33) BS03 ATP 2.3.1.234 GO:0000287 ... P05852 25578970
    183425 4wq5:B (2.33) BS01 MG 2.3.1.234 GO:0000287 ... P05852 25578970
    183426 4wq5:B (2.33) BS02 FE 2.3.1.234 GO:0000287 ... P05852 25578970
    183427 4wq5:B (2.33) BS03 ATP 2.3.1.234 GO:0000287 ... P05852 25578970
    183428 4wq6:A (1.72) BS01 3TQ 2.4.2.12 GO:0005125 ... P43490 25556090 MOAD: ic50=0.026uM
    BindingDB: IC50=9.30nM
    183429 4wq6:B (1.72) BS01 3TQ 2.4.2.12 GO:0005125 ... P43490 25556090 MOAD: ic50=0.026uM
    BindingDB: IC50=9.30nM
    183430 4wq7:A (1.98) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183431 4wq7:A (1.98) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183432 4wq8:A (1.3989) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183433 4wq8:A (1.3989) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183434 4wq9:A (1.47) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183435 4wq9:A (1.47) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183436 4wq9:A (1.47) BS03 THJ 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183437 4wqa:A (1.64) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183438 4wqa:A (1.64) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183439 4wqa:A (1.64) BS03 SO3 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183440 4wqb:A (1.5013) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183441 4wqb:A (1.5013) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183442 4wqb:A (1.5013) BS03 SO3 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183443 4wqc:A (1.56) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183444 4wqc:A (1.56) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183445 4wqc:A (1.56) BS03 THJ 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183446 4wqd:A (1.22) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183447 4wqd:A (1.22) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183448 4wqe:A (1.4) BS01 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183449 4wqe:A (1.4) BS02 HEC 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183450 4wqe:A (1.4) BS03 THJ 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183451 4wqe:A (1.4) BS04 SO3 1.8.2.2 GO:0009055 ... D3RVD4 25673691
    183452 4wqf:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    183453 4wqf:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    183454 4wqf:A0 (2.8) BS03 rna ? GO:0003735 ... P60493 25594181
    183455 4wqf:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    183456 4wqf:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    183457 4wqf:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    183458 4wqf:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    183459 4wqf:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    183460 4wqf:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    183461 4wqf:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    183462 4wqf:A5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    183463 4wqf:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    183464 4wqf:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    183465 4wqf:A6 (2.8) BS03 ZN ? GO:0000049 ... P35871 25594181
    183466 4wqf:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    183467 4wqf:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    183468 4wqf:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    183469 4wqf:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    183470 4wqf:A7 (2.8) BS05 MG ? GO:0003735 ... P80340 25594181
    183471 4wqf:A7 (2.8) BS06 MG ? GO:0003735 ... P80340 25594181
    183472 4wqf:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    183473 4wqf:A8 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 25594181
    183474 4wqf:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    183475 4wqf:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    183476 4wqf:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    183477 4wqf:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    183478 4wqf:AD (2.8) BS02 MG ? GO:0002181 ... P60405 25594181
    183479 4wqf:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    183480 4wqf:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    183481 4wqf:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    183482 4wqf:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    183483 4wqf:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    183484 4wqf:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    183485 4wqf:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    183486 4wqf:AE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    183487 4wqf:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    183488 4wqf:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    183489 4wqf:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    183490 4wqf:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    183491 4wqf:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    183492 4wqf:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    183493 4wqf:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    183494 4wqf:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    183495 4wqf:AG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 25594181
    183496 4wqf:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    183497 4wqf:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183498 4wqf:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    183499 4wqf:AK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    183500 4wqf:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    183501 4wqf:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    183502 4wqf:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    183503 4wqf:AN (2.8) BS03 MG ? GO:0003729 ... P60488 25594181
    183504 4wqf:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    183505 4wqf:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    183506 4wqf:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    183507 4wqf:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    183508 4wqf:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    183509 4wqf:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    183510 4wqf:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    183511 4wqf:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    183512 4wqf:AQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    183513 4wqf:AQ (2.8) BS04 MG ? GO:0000049 ... P60489 25594181
    183514 4wqf:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    183515 4wqf:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    183516 4wqf:AR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25594181
    183517 4wqf:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    183518 4wqf:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    183519 4wqf:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    183520 4wqf:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    183521 4wqf:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    183522 4wqf:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    183523 4wqf:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    183524 4wqf:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    183525 4wqf:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    183526 4wqf:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    183527 4wqf:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    183528 4wqf:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    183529 4wqf:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    183530 4wqf:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    183531 4wqf:AV (2.8) BS06 MG ? GO:0003723 ... P60492 25594181
    183532 4wqf:AV (2.8) BS07 MG ? GO:0003723 ... P60492 25594181
    183533 4wqf:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    183534 4wqf:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    183535 4wqf:AX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    183536 4wqf:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    183537 4wqf:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    183538 4wqf:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    183539 4wqf:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    183540 4wqf:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    183541 4wqf:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    183542 4wqf:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    183543 4wqf:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    183544 4wqf:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    183545 4wqf:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    183546 4wqf:BG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    183547 4wqf:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183548 4wqf:BI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    183549 4wqf:BI (2.8) BS02 rna ? GO:0000049 ... P80374 25594181
    183550 4wqf:BJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    183551 4wqf:BK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    183552 4wqf:BK (2.8) BS02 MG ? GO:0003735 ... P80376 25594181
    183553 4wqf:BL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    183554 4wqf:BL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25594181
    183555 4wqf:BM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    183556 4wqf:BM (2.8) BS02 MG ? GO:0000049 ... P80377 25594181
    183557 4wqf:BN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183558 4wqf:BN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    183559 4wqf:BN (2.8) BS03 MG N/A GO:0003735 ... N/A 25594181
    183560 4wqf:BO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    183561 4wqf:BO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    183562 4wqf:BP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    183563 4wqf:BQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183564 4wqf:BR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    183565 4wqf:BS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    183566 4wqf:BT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    183567 4wqf:BZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183568 4wqf:BZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183569 4wqf:BZ (2.8) BS03 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183570 4wqf:BZ (2.8) BS04 FUA ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183571 4wqf:BZ (2.8) BS05 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183572 4wqf:C0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    183573 4wqf:C0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    183574 4wqf:C0 (2.8) BS03 rna ? GO:0003735 ... P60493 25594181
    183575 4wqf:C1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    183576 4wqf:C2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    183577 4wqf:C3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    183578 4wqf:C3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    183579 4wqf:C3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    183580 4wqf:C4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    183581 4wqf:C4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    183582 4wqf:C5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    183583 4wqf:C5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    183584 4wqf:C6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    183585 4wqf:C6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25594181
    183586 4wqf:C7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    183587 4wqf:C7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    183588 4wqf:C8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    183589 4wqf:C9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    183590 4wqf:C9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    183591 4wqf:CC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    183592 4wqf:CD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    183593 4wqf:CD (2.8) BS02 MG ? GO:0002181 ... P60405 25594181
    183594 4wqf:CD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    183595 4wqf:CE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    183596 4wqf:CE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    183597 4wqf:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    183598 4wqf:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    183599 4wqf:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    183600 4wqf:CF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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