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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183201 4wpo:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    183202 4wpo:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    183203 4wpo:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    183204 4wpo:CG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    183205 4wpo:CG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    183206 4wpo:CG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25594181
    183207 4wpo:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183208 4wpo:CK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    183209 4wpo:CL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    183210 4wpo:CN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    183211 4wpo:CO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    183212 4wpo:CO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    183213 4wpo:CP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    183214 4wpo:CP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    183215 4wpo:CQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    183216 4wpo:CQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    183217 4wpo:CQ (2.8) BS03 rna ? GO:0000049 ... P60489 25594181
    183218 4wpo:CQ (2.8) BS04 MG ? GO:0000049 ... P60489 25594181
    183219 4wpo:CR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    183220 4wpo:CS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    183221 4wpo:CS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    183222 4wpo:CT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    183223 4wpo:CT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    183224 4wpo:CU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    183225 4wpo:CU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    183226 4wpo:CU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    183227 4wpo:CV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    183228 4wpo:CV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    183229 4wpo:CV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    183230 4wpo:CW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    183231 4wpo:CW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    183232 4wpo:CX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    183233 4wpo:CY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    183234 4wpo:CY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    183235 4wpo:CZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    183236 4wpo:CZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    183237 4wpo:DB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    183238 4wpo:DC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    183239 4wpo:DD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    183240 4wpo:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    183241 4wpo:DE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    183242 4wpo:DE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    183243 4wpo:DE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25594181
    183244 4wpo:DF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    183245 4wpo:DF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25594181
    183246 4wpo:DG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    183247 4wpo:DG (2.8) BS02 rna ? GO:0000028 ... P17291 25594181
    183248 4wpo:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183249 4wpo:DI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    183250 4wpo:DJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    183251 4wpo:DK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    183252 4wpo:DL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    183253 4wpo:DL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25594181
    183254 4wpo:DM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    183255 4wpo:DN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183256 4wpo:DN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    183257 4wpo:DO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    183258 4wpo:DO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    183259 4wpo:DP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    183260 4wpo:DQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    183261 4wpo:DR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    183262 4wpo:DS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    183263 4wpo:DT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    183264 4wpo:DZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183265 4wpo:DZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183266 4wpo:DZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    183267 4wpt:A (1.6) BS01 PEP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    183268 4wpu:A (2.26) BS01 GDP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    183269 4wpu:A (2.26) BS02 PEP 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    183270 4wpv:A (1.672) BS01 ZN 4.1.1.32 GO:0004611 ... A5TYT6 N/A
    183271 4wq1:11 (3.1) BS01 rna ? GO:0002181 ... P60405 26037619
    183272 4wq1:11 (3.1) BS02 MG ? GO:0002181 ... P60405 26037619
    183273 4wq1:12 (3.1) BS01 rna ? GO:0003735 ... P80371 26037619
    183274 4wq1:15 (3.1) BS01 rna ? GO:0003729 ... P60488 26037619
    183275 4wq1:19 (3.1) BS01 rna ? GO:0002181 ... P60405 26037619
    183276 4wq1:19 (3.1) BS02 rna ? GO:0002181 ... P60405 26037619
    183277 4wq1:19 (3.1) BS03 MG ? GO:0002181 ... P60405 26037619
    183278 4wq1:1A (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    183279 4wq1:1E (3.1) BS01 rna ? GO:0003735 ... P80371 26037619
    183280 4wq1:1I (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 26037619
    183281 4wq1:21 (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    183282 4wq1:21 (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 26037619
    183283 4wq1:22 (3.1) BS01 rna ? GO:0003676 ... P80372 26037619
    183284 4wq1:22 (3.1) BS02 rna ? GO:0003676 ... P80372 26037619
    183285 4wq1:25 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    183286 4wq1:25 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    183287 4wq1:29 (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 26037619
    183288 4wq1:2A (3.1) BS01 rna ? GO:0003735 ... P80376 26037619
    183289 4wq1:2A (3.1) BS02 rna ? GO:0003735 ... P80376 26037619
    183290 4wq1:2A (3.1) BS03 MG ? GO:0003735 ... P80376 26037619
    183291 4wq1:2E (3.1) BS01 rna ? GO:0003676 ... P80372 26037619
    183292 4wq1:2E (3.1) BS02 rna ? GO:0003676 ... P80372 26037619
    183293 4wq1:2I (3.1) BS01 rna ? GO:0003735 ... P80376 26037619
    183294 4wq1:2I (3.1) BS02 MG ? GO:0003735 ... P80376 26037619
    183295 4wq1:31 (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    183296 4wq1:32 (3.1) BS01 rna ? GO:0003723 ... P80373 26037619
    183297 4wq1:32 (3.1) BS02 ZN ? GO:0003723 ... P80373 26037619
    183298 4wq1:35 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    183299 4wq1:39 (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 26037619
    183300 4wq1:39 (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 26037619
    183301 4wq1:3A (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    183302 4wq1:3E (3.1) BS01 rna ? GO:0003723 ... P80373 26037619
    183303 4wq1:3I (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 26037619
    183304 4wq1:41 (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    183305 4wq1:41 (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    183306 4wq1:41 (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    183307 4wq1:41 (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    183308 4wq1:42 (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    183309 4wq1:42 (3.1) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    183310 4wq1:45 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    183311 4wq1:45 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    183312 4wq1:45 (3.1) BS03 rna ? GO:0000049 ... P60489 26037619
    183313 4wq1:45 (3.1) BS04 MG ? GO:0000049 ... P60489 26037619
    183314 4wq1:49 (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 26037619
    183315 4wq1:49 (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 26037619
    183316 4wq1:49 (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 26037619
    183317 4wq1:49 (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 26037619
    183318 4wq1:4A (3.1) BS01 rna ? GO:0000049 ... P80377 26037619
    183319 4wq1:4E (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 26037619
    183320 4wq1:4E (3.1) BS02 rna ? GO:0003723 ... Q5SHQ5 26037619
    183321 4wq1:4I (3.1) BS01 rna ? GO:0000049 ... P80377 26037619
    183322 4wq1:51 (3.1) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    183323 4wq1:52 (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    183324 4wq1:52 (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 26037619
    183325 4wq1:55 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    183326 4wq1:58 (3.1) BS01 rna ? GO:0003729 ... P60488 26037619
    183327 4wq1:59 (3.1) BS01 rna ? GO:0002181 ... P0DOY8 26037619
    183328 4wq1:5A (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    183329 4wq1:5A (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    183330 4wq1:5E (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 26037619
    183331 4wq1:5I (3.1) BS01 rna ? GO:0003735 ... P0DOY6 26037619
    183332 4wq1:5I (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 26037619
    183333 4wq1:61 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    183334 4wq1:62 (3.1) BS01 rna ? GO:0000028 ... P17291 26037619
    183335 4wq1:62 (3.1) BS02 rna ? GO:0000028 ... P17291 26037619
    183336 4wq1:65 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    183337 4wq1:65 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    183338 4wq1:68 (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 26037619
    183339 4wq1:68 (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 26037619
    183340 4wq1:69 (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 26037619
    183341 4wq1:69 (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 26037619
    183342 4wq1:6A (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    183343 4wq1:6A (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    183344 4wq1:6E (3.1) BS01 rna ? GO:0000028 ... P17291 26037619
    183345 4wq1:6E (3.1) BS02 rna ? GO:0000028 ... P17291 26037619
    183346 4wq1:6I (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 26037619
    183347 4wq1:6I (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 26037619
    183348 4wq1:72 (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    183349 4wq1:75 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    183350 4wq1:75 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    183351 4wq1:78 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 26037619
    183352 4wq1:78 (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 26037619
    183353 4wq1:7A (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    183354 4wq1:7E (3.1) BS01 rna ? GO:0003735 ... P0DOY9 26037619
    183355 4wq1:7I (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 26037619
    183356 4wq1:82 (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    183357 4wq1:82 (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    183358 4wq1:85 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    183359 4wq1:88 (3.1) BS01 rna ? GO:0000049 ... P60489 26037619
    183360 4wq1:88 (3.1) BS02 rna ? GO:0000049 ... P60489 26037619
    183361 4wq1:88 (3.1) BS03 rna ? GO:0000049 ... P60489 26037619
    183362 4wq1:88 (3.1) BS04 MG ? GO:0000049 ... P60489 26037619
    183363 4wq1:8A (3.1) BS01 rna ? GO:0003735 ... A0A0N0BLS5 26037619
    183364 4wq1:8E (3.1) BS01 rna ? GO:0000049 ... P80374 26037619
    183365 4wq1:8E (3.1) BS02 rna ? GO:0000049 ... P80374 26037619
    183366 4wq1:8I (3.1) BS01 rna ? GO:0003735 ... A0A0N0BLS5 26037619
    183367 4wq1:95 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    183368 4wq1:98 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 26037619
    183369 4wq1:9A (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    183370 4wq1:9I (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 26037619
    183371 4wq1:A5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    183372 4wq1:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 26037619
    183373 4wq1:A8 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 26037619
    183374 4wq1:AA (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    183375 4wq1:AI (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 26037619
    183376 4wq1:B5 (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    183377 4wq1:B8 (3.1) BS01 rna ? GO:0003735 ... P60490 26037619
    183378 4wq1:B8 (3.1) BS02 rna ? GO:0003735 ... P60490 26037619
    183379 4wq1:B8 (3.1) BS03 MG ? GO:0003735 ... P60490 26037619
    183380 4wq1:BA (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    183381 4wq1:BI (3.1) BS01 rna ? GO:0003723 ... P80380 26037619
    183382 4wq1:C5 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    183383 4wq1:C5 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    183384 4wq1:C8 (3.1) BS01 rna ? GO:0000027 ... P60491 26037619
    183385 4wq1:D5 (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 26037619
    183386 4wq1:D5 (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 26037619
    183387 4wq1:D8 (3.1) BS01 rna ? GO:0003723 ... P60492 26037619
    183388 4wq1:E5 (3.1) BS01 rna ? GO:0003735 ... P60493 26037619
    183389 4wq1:E5 (3.1) BS02 rna ? GO:0003735 ... P60493 26037619
    183390 4wq1:E5 (3.1) BS03 MG ? GO:0003735 ... P60493 26037619
    183391 4wq1:E8 (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 26037619
    183392 4wq1:F5 (3.1) BS01 rna ? GO:0003735 ... P60494 26037619
    183393 4wq1:F8 (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 26037619
    183394 4wq1:G5 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 26037619
    183395 4wq1:G8 (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 26037619
    183396 4wq1:G8 (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 26037619
    183397 4wq1:H5 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 26037619
    183398 4wq1:H5 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 26037619
    183399 4wq1:H8 (3.1) BS01 rna ? GO:0003735 ... Q5SHZ1 26037619
    183400 4wq1:I5 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 26037619
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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