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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    182801 4wn0:A (2.2) BS01 CA ? GO:0005509 ... Q5PPM0 26755729
    182802 4wn0:A (2.2) BS02 CA ? GO:0005509 ... Q5PPM0 26755729
    182803 4wn0:A (2.2) BS03 CA ? GO:0005509 ... Q5PPM0 26755729
    182804 4wn0:A (2.2) BS04 PO4 ? GO:0005509 ... Q5PPM0 26755729
    182805 4wn0:A (2.2) BS05 G3P ? GO:0005509 ... Q5PPM0 26755729 MOAD: ic50=0.6mM
    PDBbind: -logKd/Ki=3.22, IC50=0.6mM
    182806 4wn3:A (1.8) BS01 3R3 2.4.2.10 GO:0004588 ... P13298 N/A
    182807 4wn9:A (1.9) BS01 ICS 1.18.6.1 GO:0005524 ... P00467 25710326
    182808 4wn9:A (1.9) BS02 CLF 1.18.6.1 GO:0005524 ... P00467 25710326
    182809 4wn9:B (1.9) BS01 CLF 1.18.6.1 GO:0005524 ... P11347 25710326
    182810 4wn9:B (1.9) BS02 PRO 1.18.6.1 GO:0005524 ... P11347 25710326
    182811 4wn9:B (1.9) BS03 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    182812 4wn9:B (1.9) BS04 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    182813 4wn9:C (1.9) BS01 ICS 1.18.6.1 GO:0005524 ... P00467 25710326
    182814 4wn9:C (1.9) BS02 CLF 1.18.6.1 GO:0005524 ... P00467 25710326
    182815 4wn9:D (1.9) BS01 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    182816 4wn9:D (1.9) BS02 FE 1.18.6.1 GO:0005524 ... P11347 25710326
    182817 4wn9:D (1.9) BS03 CLF 1.18.6.1 GO:0005524 ... P11347 25710326
    182818 4wn9:D (1.9) BS04 PRO 1.18.6.1 GO:0005524 ... P11347 25710326
    182819 4wna:A (2.0) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 25710326
    182820 4wna:A (2.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 25710326
    182821 4wna:B (2.0) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 25710326
    182822 4wna:B (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    182823 4wna:B (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    182824 4wna:C (2.0) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 25710326
    182825 4wna:C (2.0) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 25710326
    182826 4wna:D (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    182827 4wna:D (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 25710326
    182828 4wna:D (2.0) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 25710326
    182829 4wnc:A (1.99) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182830 4wnc:B (1.99) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182831 4wnc:C (1.99) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182832 4wnc:C (1.99) BS02 ZN 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182833 4wnc:D (1.99) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182834 4wnc:E (1.99) BS01 ZN 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182835 4wnc:E (1.99) BS02 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182836 4wnc:O (1.99) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182837 4wni:A (2.3) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182838 4wni:B (2.3) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182839 4wni:B (2.3) BS02 ZN 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182840 4wni:O (2.3) BS01 NAD 1.2.1.12
    2.6.99.-    		 GO:0000226 ... P04406 25451934
    182841 4wnj:B (1.398) BS01 QUE ? GO:0005179 ... P02766 26249340
    182842 4wnk:A (2.42) BS01 453 2.7.11.16 GO:0004672 ... P43249 26032411 MOAD: ic50=0.38uM
    PDBbind: -logKd/Ki=6.42, IC50=0.38uM
    182843 4wnl:A (2.8) BS01 peptide ? GO:0003723 ... P36068 25535369
    182844 4wnl:B (2.8) BS01 peptide ? GO:0003723 ... P36068 25535369
    182845 4wnl:C (2.8) BS01 peptide ? GO:0003723 ... P36068 25535369
    182846 4wnl:D (2.8) BS01 peptide ? GO:0003723 ... P36068 25535369
    182847 4wnn:D (1.8) BS01 peptide ? GO:0000786 ... P02293 26455391
    182848 4wns:B (1.399) BS01 3RL ? GO:0005179 ... P02766 26249340
    182849 4wnt:A (2.6) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182850 4wnt:A (2.6) BS02 AJN 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: Ki=4.6nM
    182851 4wnt:A (2.6) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182852 4wnt:A (2.6) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182853 4wnt:B (2.6) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182854 4wnt:B (2.6) BS02 AJN 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: Ki=4.6nM
    182855 4wnt:B (2.6) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182856 4wnu:A (2.26) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182857 4wnu:A (2.26) BS02 QDN 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=30nM
    182858 4wnu:A (2.26) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182859 4wnu:A (2.26) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182860 4wnu:B (2.26) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182861 4wnu:B (2.26) BS02 QDN 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=30nM
    182862 4wnu:B (2.26) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182863 4wnu:C (2.26) BS01 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182864 4wnu:C (2.26) BS02 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182865 4wnu:C (2.26) BS03 QDN 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=30nM
    182866 4wnu:C (2.26) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182867 4wnu:D (2.26) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182868 4wnu:D (2.26) BS02 QDN 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=30nM
    182869 4wnu:D (2.26) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182870 4wnv:A (2.35) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182871 4wnv:A (2.35) BS02 QI9 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=15000nM
    182872 4wnv:A (2.35) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182873 4wnv:A (2.35) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182874 4wnv:B (2.35) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182875 4wnv:B (2.35) BS02 QI9 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=15000nM
    182876 4wnv:B (2.35) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182877 4wnv:C (2.35) BS01 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182878 4wnv:C (2.35) BS02 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182879 4wnv:C (2.35) BS03 QI9 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=15000nM
    182880 4wnv:C (2.35) BS04 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182881 4wnv:D (2.35) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182882 4wnv:D (2.35) BS02 QI9 1.14.14.- GO:0004497 ... P10635 25555909 BindingDB: IC50=10.0nM, Ki=15000nM
    182883 4wnv:D (2.35) BS03 ZN 1.14.14.- GO:0004497 ... P10635 25555909
    182884 4wnw:A (3.299) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182885 4wnw:A (3.299) BS02 RTZ 1.14.14.- GO:0004497 ... P10635 25555909
    182886 4wnw:B (3.299) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    182887 4wnw:B (3.299) BS02 RTZ 1.14.14.- GO:0004497 ... P10635 25555909
    182888 4wo0:A (1.339) BS01 AGI ? GO:0005179 ... P02766 26249340 BindingDB: IC50=653nM, Kd=250nM
    182889 4wo0:B (1.339) BS01 AGI ? GO:0005179 ... P02766 26249340 BindingDB: IC50=653nM, Kd=250nM
    182890 4woi:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 26224058
    182891 4woi:AC (3.0) BS01 rna ? GO:0000028 ... P0A7V3 26224058
    182892 4woi:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 26224058
    182893 4woi:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 26224058
    182894 4woi:AF (3.0) BS01 rna ? GO:0002181 ... P02358 26224058
    182895 4woi:AG (3.0) BS01 rna ? GO:0000028 ... P02359 26224058
    182896 4woi:AG (3.0) BS02 rna ? GO:0000028 ... P02359 26224058
    182897 4woi:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 26224058
    182898 4woi:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 26224058
    182899 4woi:AI (3.0) BS02 rna ? GO:0000049 ... P0A7X3 26224058
    182900 4woi:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 26224058
    182901 4woi:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 26224058
    182902 4woi:AK (3.0) BS02 rna ? GO:0002181 ... P0A7R9 26224058
    182903 4woi:AK (3.0) BS03 rna ? GO:0002181 ... P0A7R9 26224058
    182904 4woi:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 26224058
    182905 4woi:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 26224058
    182906 4woi:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 26224058
    182907 4woi:AO (3.0) BS01 rna N/A GO:0003735 ... N/A 26224058
    182908 4woi:AO (3.0) BS02 rna N/A GO:0003735 ... N/A 26224058
    182909 4woi:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 26224058
    182910 4woi:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 26224058
    182911 4woi:AR (3.0) BS01 rna ? GO:0002181 ... P0A7T7 26224058
    182912 4woi:AS (3.0) BS01 rna ? GO:0000028 ... P0A7U3 26224058
    182913 4woi:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 26224058
    182914 4woi:AU (3.0) BS01 rna ? GO:0000028 ... P68679 26224058
    182915 4woi:AU (3.0) BS02 rna ? GO:0000028 ... P68679 26224058
    182916 4woi:AV (3.0) BS01 rna ? GO:0002184 ... P0A805 26224058
    182917 4woi:B0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 26224058
    182918 4woi:B1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 26224058
    182919 4woi:B2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 26224058
    182920 4woi:B3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 26224058
    182921 4woi:B4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 26224058
    182922 4woi:B4 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 26224058
    182923 4woi:B5 (3.0) BS01 rna ? GO:0000049 ... Q5SLP7 26224058
    182924 4woi:B5 (3.0) BS02 rna ? GO:0000049 ... Q5SLP7 26224058
    182925 4woi:BC (3.0) BS01 rna ? GO:0000027 ... P60422 26224058
    182926 4woi:BD (3.0) BS01 rna ? GO:0000027 ... P60438 26224058
    182927 4woi:BE (3.0) BS01 rna ? GO:0001070 ... P60723 26224058
    182928 4woi:BF (3.0) BS01 rna ? GO:0000027 ... P62399 26224058
    182929 4woi:BF (3.0) BS02 rna ? GO:0000027 ... P62399 26224058
    182930 4woi:BF (3.0) BS03 rna ? GO:0000027 ... P62399 26224058
    182931 4woi:BG (3.0) BS01 rna ? GO:0000027 ... P0AG55 26224058
    182932 4woi:BH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 26224058
    182933 4woi:BH (3.0) BS02 rna ? GO:0002181 ... P0A7R1 26224058
    182934 4woi:BI (3.0) BS01 rna ? GO:0000027 ... P0A7J7 26224058
    182935 4woi:BJ (3.0) BS01 rna ? GO:0002181 ... P0AA10 26224058
    182936 4woi:BK (3.0) BS01 rna ? GO:0002181 ... P0ADY3 26224058
    182937 4woi:BK (3.0) BS02 rna ? GO:0002181 ... P0ADY3 26224058
    182938 4woi:BL (3.0) BS01 rna ? GO:0002181 ... P02413 26224058
    182939 4woi:BM (3.0) BS01 rna ? GO:0000027 ... P0ADY7 26224058
    182940 4woi:BM (3.0) BS02 rna ? GO:0000027 ... P0ADY7 26224058
    182941 4woi:BN (3.0) BS01 rna ? GO:0000027 ... P0AG44 26224058
    182942 4woi:BO (3.0) BS01 rna ? GO:0002181 ... P0C018 26224058
    182943 4woi:BO (3.0) BS02 rna ? GO:0002181 ... P0C018 26224058
    182944 4woi:BP (3.0) BS01 rna ? GO:0000027 ... P0A7K6 26224058
    182945 4woi:BP (3.0) BS02 rna ? GO:0000027 ... P0A7K6 26224058
    182946 4woi:BQ (3.0) BS01 rna ? GO:0000027 ... P0A7L3 26224058
    182947 4woi:BR (3.0) BS01 rna ? GO:0002181 ... P0AG48 26224058
    182948 4woi:BS (3.0) BS01 rna ? GO:0002181 ... P61175 26224058
    182949 4woi:BT (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 26224058
    182950 4woi:BU (3.0) BS01 rna ? GO:0000027 ... P60624 26224058
    182951 4woi:BV (3.0) BS01 rna ? GO:0000027 ... P68919 26224058
    182952 4woi:BV (3.0) BS02 rna ? GO:0000027 ... P68919 26224058
    182953 4woi:BW (3.0) BS01 rna ? GO:0000027 ... P0A7L8 26224058
    182954 4woi:BW (3.0) BS02 rna ? GO:0000027 ... P0A7L8 26224058
    182955 4woi:BX (3.0) BS01 rna ? GO:0000027 ... P0A7M2 26224058
    182956 4woi:BY (3.0) BS01 rna ? GO:0000027 ... P0A7M6 26224058
    182957 4woi:BZ (3.0) BS01 rna ? GO:0000027 ... P0AG51 26224058
    182958 4woi:BZ (3.0) BS02 rna ? GO:0000027 ... P0AG51 26224058
    182959 4woi:C0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 26224058
    182960 4woi:C1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 26224058
    182961 4woi:C2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 26224058
    182962 4woi:C3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 26224058
    182963 4woi:C4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 26224058
    182964 4woi:C4 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 26224058
    182965 4woi:CC (3.0) BS01 rna ? GO:0000027 ... P60422 26224058
    182966 4woi:CD (3.0) BS01 rna ? GO:0000027 ... P60438 26224058
    182967 4woi:CE (3.0) BS01 rna ? GO:0001070 ... P60723 26224058
    182968 4woi:CF (3.0) BS01 rna ? GO:0000027 ... P62399 26224058
    182969 4woi:CF (3.0) BS02 rna ? GO:0000027 ... P62399 26224058
    182970 4woi:CF (3.0) BS03 rna ? GO:0000027 ... P62399 26224058
    182971 4woi:CG (3.0) BS01 rna ? GO:0000027 ... P0AG55 26224058
    182972 4woi:CH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 26224058
    182973 4woi:CI (3.0) BS01 rna ? GO:0000027 ... P0A7J7 26224058
    182974 4woi:CJ (3.0) BS01 rna ? GO:0002181 ... P0AA10 26224058
    182975 4woi:CK (3.0) BS01 rna ? GO:0002181 ... P0ADY3 26224058
    182976 4woi:CK (3.0) BS02 rna ? GO:0002181 ... P0ADY3 26224058
    182977 4woi:CL (3.0) BS01 rna ? GO:0002181 ... P02413 26224058
    182978 4woi:CM (3.0) BS01 rna ? GO:0000027 ... P0ADY7 26224058
    182979 4woi:CM (3.0) BS02 rna ? GO:0000027 ... P0ADY7 26224058
    182980 4woi:CN (3.0) BS01 rna ? GO:0000027 ... P0AG44 26224058
    182981 4woi:CO (3.0) BS01 rna ? GO:0002181 ... P0C018 26224058
    182982 4woi:CO (3.0) BS02 rna ? GO:0002181 ... P0C018 26224058
    182983 4woi:CP (3.0) BS01 rna ? GO:0000027 ... P0A7K6 26224058
    182984 4woi:CP (3.0) BS02 rna ? GO:0000027 ... P0A7K6 26224058
    182985 4woi:CQ (3.0) BS01 rna ? GO:0000027 ... P0A7L3 26224058
    182986 4woi:CR (3.0) BS01 rna ? GO:0002181 ... P0AG48 26224058
    182987 4woi:CS (3.0) BS01 rna ? GO:0002181 ... P61175 26224058
    182988 4woi:CT (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 26224058
    182989 4woi:CU (3.0) BS01 rna ? GO:0000027 ... P60624 26224058
    182990 4woi:CV (3.0) BS01 rna ? GO:0000027 ... P68919 26224058
    182991 4woi:CV (3.0) BS02 rna ? GO:0000027 ... P68919 26224058
    182992 4woi:CW (3.0) BS01 rna ? GO:0000027 ... P0A7L8 26224058
    182993 4woi:CW (3.0) BS02 rna ? GO:0000027 ... P0A7L8 26224058
    182994 4woi:CX (3.0) BS01 rna ? GO:0000027 ... P0A7M2 26224058
    182995 4woi:CY (3.0) BS01 rna ? GO:0000027 ... P0A7M6 26224058
    182996 4woi:CZ (3.0) BS01 rna ? GO:0000027 ... P0AG51 26224058
    182997 4woi:CZ (3.0) BS02 rna ? GO:0000027 ... P0AG51 26224058
    182998 4woi:DB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 26224058
    182999 4woi:DB (3.0) BS02 rna ? GO:0000028 ... P0A7V0 26224058
    183000 4woi:DC (3.0) BS01 rna ? GO:0000028 ... P0A7V3 26224058
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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