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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    182201 4wf1:CE (3.09) BS01 rna ? GO:0000028 ... P0A7W1 25368144
    182202 4wf1:CF (3.09) BS01 rna ? GO:0003735 ... P02358 25368144
    182203 4wf1:CG (3.09) BS01 rna ? GO:0003723 ... P02359 25368144
    182204 4wf1:CH (3.09) BS01 rna ? GO:0000028 ... P0A7W7 25368144
    182205 4wf1:CI (3.09) BS01 rna ? GO:0000049 ... P0A7X3 25368144
    182206 4wf1:CJ (3.09) BS01 rna ? GO:0000049 ... P0A7R5 25368144
    182207 4wf1:CK (3.09) BS01 rna ? GO:0002181 ... P0A7R9 25368144
    182208 4wf1:CL (3.09) BS01 rna ? GO:0000049 ... P0A7S3 25368144
    182209 4wf1:CM (3.09) BS01 rna ? GO:0000049 ... P0A7S9 25368144
    182210 4wf1:CN (3.09) BS01 rna ? GO:0000028 ... P0AG59 25368144
    182211 4wf1:CO (3.09) BS01 rna ? GO:0000028 ... P0ADZ4 25368144
    182212 4wf1:CO (3.09) BS02 rna ? GO:0000028 ... P0ADZ4 25368144
    182213 4wf1:CP (3.09) BS01 rna ? GO:0000028 ... P0A7T3 25368144
    182214 4wf1:CQ (3.09) BS01 rna ? GO:0000028 ... P0AG63 25368144
    182215 4wf1:CR (3.09) BS01 rna ? GO:0003735 ... P0A7T7 25368144
    182216 4wf1:CS (3.09) BS01 rna ? GO:0003723 ... P0A7U3 25368144
    182217 4wf1:CT (3.09) BS01 rna ? GO:0000028 ... P0A7U7 25368144
    182218 4wf1:CU (3.09) BS01 rna ? GO:0003735 ... P68679 25368144
    182219 4wf1:D0 (3.09) BS01 rna ? GO:0000027 ... P0A7N4 25368144
    182220 4wf1:D1 (3.09) BS01 rna ? GO:0000027 ... P0A7N9 25368144
    182221 4wf1:D2 (3.09) BS01 rna ? GO:0002181 ... P0A7P5 25368144
    182222 4wf1:D3 (3.09) BS01 rna ? GO:0002181 ... P0A7Q1 25368144
    182223 4wf1:D4 (3.09) BS01 rna ? GO:0002181 ... P0A7Q6 25368144
    182224 4wf1:DC (3.09) BS01 rna ? GO:0000027 ... P60422 25368144
    182225 4wf1:DD (3.09) BS01 rna ? GO:0000027 ... P60438 25368144
    182226 4wf1:DE (3.09) BS01 rna ? GO:0001070 ... P60723 25368144
    182227 4wf1:DF (3.09) BS01 rna ? GO:0000027 ... P62399 25368144
    182228 4wf1:DF (3.09) BS02 rna ? GO:0000027 ... P62399 25368144
    182229 4wf1:DG (3.09) BS01 rna ? GO:0000027 ... P0AG55 25368144
    182230 4wf1:DH (3.09) BS01 rna ? GO:0002181 ... P0A7R1 25368144
    182231 4wf1:DI (3.09) BS01 rna ? GO:0000027 ... P0A7J7 25368144
    182232 4wf1:DJ (3.09) BS01 rna ? GO:0002181 ... P0AA10 25368144
    182233 4wf1:DK (3.09) BS01 rna ? GO:0002181 ... P0ADY3 25368144
    182234 4wf1:DL (3.09) BS01 rna ? GO:0002181 ... P02413 25368144
    182235 4wf1:DM (3.09) BS01 rna ? GO:0000027 ... P0ADY7 25368144
    182236 4wf1:DM (3.09) BS02 rna ? GO:0000027 ... P0ADY7 25368144
    182237 4wf1:DN (3.09) BS01 rna ? GO:0000027 ... P0AG44 25368144
    182238 4wf1:DO (3.09) BS01 rna ? GO:0002181 ... P0C018 25368144
    182239 4wf1:DO (3.09) BS02 rna ? GO:0002181 ... P0C018 25368144
    182240 4wf1:DP (3.09) BS01 rna ? GO:0000027 ... P0A7K6 25368144
    182241 4wf1:DP (3.09) BS02 rna ? GO:0000027 ... P0A7K6 25368144
    182242 4wf1:DQ (3.09) BS01 rna ? GO:0000027 ... P0A7L3 25368144
    182243 4wf1:DR (3.09) BS01 rna ? GO:0002181 ... P0AG48 25368144
    182244 4wf1:DS (3.09) BS01 rna ? GO:0002181 ... P61175 25368144
    182245 4wf1:DT (3.09) BS01 rna ? GO:0000027 ... P0ADZ0 25368144
    182246 4wf1:DU (3.09) BS01 rna ? GO:0000027 ... P60624 25368144
    182247 4wf1:DV (3.09) BS01 rna ? GO:0000027 ... P68919 25368144
    182248 4wf1:DV (3.09) BS02 rna ? GO:0000027 ... P68919 25368144
    182249 4wf1:DW (3.09) BS01 rna ? GO:0003735 ... P0A7L8 25368144
    182250 4wf1:DW (3.09) BS02 rna ? GO:0003735 ... P0A7L8 25368144
    182251 4wf1:DX (3.09) BS01 rna ? GO:0000027 ... P0A7M2 25368144
    182252 4wf1:DY (3.09) BS01 rna ? GO:0000027 ... P0A7M6 25368144
    182253 4wf1:DZ (3.09) BS01 rna ? GO:0000027 ... P0AG51 25368144
    182254 4wf1:DZ (3.09) BS02 rna ? GO:0000027 ... P0AG51 25368144
    182255 4wf2:A (2.31) BS01 BTX 6.3.4.15 GO:0000976 ... P06709 25746672 PDBbind: -logKd/Ki=8.10, Kd=8.03nM
    BindingDB: Ki=87nM, Kd=1.5nM
    182256 4wf4:B (1.7) BS01 WF4 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635 MOAD: Kd=777uM
    PDBbind: -logKd/Ki=3.11, Kd=777uM
    182257 4wf5:A (1.45) BS01 WF4 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635 MOAD: Kd=777uM
    182258 4wf5:A (1.45) BS02 WF4 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635 MOAD: Kd=777uM
    182259 4wf5:B (1.45) BS01 WF4 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635
    182260 4wf5:B (1.45) BS02 CU 1.8.4.2 GO:0015036 ... A0A0H2UL03 25556635
    182261 4wf9:2 (3.427) BS01 rna ? GO:0003735 ... Q2FUQ0 26464510
    182262 4wf9:3 (3.427) BS01 rna ? GO:0003735 ... Q2FXQ0 26464510
    182263 4wf9:A (3.427) BS01 rna ? GO:0002181 ... P60430 26464510
    182264 4wf9:B (3.427) BS01 rna ? GO:0003735 ... Q2FW06 26464510
    182265 4wf9:B (3.427) BS02 MG ? GO:0003735 ... Q2FW06 26464510
    182266 4wf9:C (3.427) BS01 rna ? GO:0003735 ... Q2FW07 26464510
    182267 4wf9:D (3.427) BS01 rna ? GO:0000049 ... Q2FW18 26464510
    182268 4wf9:D (3.427) BS02 rna ? GO:0000049 ... Q2FW18 26464510
    182269 4wf9:E (3.427) BS01 rna ? GO:0002181 ... Q2FW21 26464510
    182270 4wf9:G (3.427) BS01 rna ? GO:0003729 ... Q2FW38 26464510
    182271 4wf9:H (3.427) BS01 rna ? GO:0003735 ... Q2FW16 26464510
    182272 4wf9:I (3.427) BS01 rna ? GO:0003735 ... P0A0F8 26464510
    182273 4wf9:J (3.427) BS01 rna ? GO:0000049 ... Q2FW13 26464510
    182274 4wf9:J (3.427) BS02 rna ? GO:0000049 ... Q2FW13 26464510
    182275 4wf9:K (3.427) BS01 rna ? GO:0003735 ... Q2FW33 26464510
    182276 4wf9:L (3.427) BS01 rna ? GO:0003735 ... Q2FW22 26464510
    182277 4wf9:L (3.427) BS02 rna ? GO:0003735 ... Q2FW22 26464510
    182278 4wf9:M (3.427) BS01 rna ? GO:0003735 ... Q2FZ42 26464510
    182279 4wf9:N (3.427) BS01 rna ? GO:0000027 ... Q2FXQ1 26464510
    182280 4wf9:O (3.427) BS01 rna ? GO:0003723 ... Q2FXS8 26464510
    182281 4wf9:P (3.427) BS01 rna ? GO:0003735 ... Q2FW11 26464510
    182282 4wf9:Q (3.427) BS01 rna ? GO:0000027 ... Q2FW08 26464510
    182283 4wf9:R (3.427) BS01 rna ? GO:0003723 ... Q2FW17 26464510
    182284 4wf9:S (3.427) BS01 rna ? GO:0003723 ... Q2FJE0 26464510
    182285 4wf9:S (3.427) BS02 rna ? GO:0003723 ... Q2FJE0 26464510
    182286 4wf9:T (3.427) BS01 rna ? GO:0003735 ... Q2FXT0 26464510
    182287 4wf9:V (3.427) BS01 rna ? GO:0003735 ... Q2FW14 26464510
    182288 4wf9:W (3.427) BS01 rna ? GO:0003735 ... P0A0G2 26464510
    182289 4wf9:W (3.427) BS02 rna ? GO:0003735 ... P0A0G2 26464510
    182290 4wf9:Z (3.427) BS01 rna ? GO:0003735 ... Q2FZF1 26464510
    182291 4wfa:2 (3.392) BS01 rna ? GO:0003735 ... Q2FUQ0 26464510
    182292 4wfa:3 (3.392) BS01 rna ? GO:0003735 ... Q2FXQ0 26464510
    182293 4wfa:4 (3.392) BS01 rna ? GO:0003735 ... Q2FW29 26464510
    182294 4wfa:A (3.392) BS01 rna ? GO:0002181 ... P60430 26464510
    182295 4wfa:A (3.392) BS02 MG ? GO:0002181 ... P60430 26464510
    182296 4wfa:B (3.392) BS01 rna ? GO:0003735 ... Q2FW06 26464510
    182297 4wfa:C (3.392) BS01 rna ? GO:0003735 ... Q2FW07 26464510
    182298 4wfa:D (3.392) BS01 rna ? GO:0000049 ... Q2FW18 26464510
    182299 4wfa:D (3.392) BS02 rna ? GO:0000049 ... Q2FW18 26464510
    182300 4wfa:E (3.392) BS01 rna ? GO:0002181 ... Q2FW21 26464510
    182301 4wfa:G (3.392) BS01 rna ? GO:0003729 ... Q2FW38 26464510
    182302 4wfa:H (3.392) BS01 rna ? GO:0003735 ... Q2FW16 26464510
    182303 4wfa:I (3.392) BS01 rna ? GO:0003735 ... P0A0F8 26464510
    182304 4wfa:J (3.392) BS01 rna ? GO:0000049 ... Q2FW13 26464510
    182305 4wfa:J (3.392) BS02 rna ? GO:0000049 ... Q2FW13 26464510
    182306 4wfa:K (3.392) BS01 rna ? GO:0003735 ... Q2FW33 26464510
    182307 4wfa:L (3.392) BS01 rna ? GO:0003735 ... Q2FW22 26464510
    182308 4wfa:L (3.392) BS02 rna ? GO:0003735 ... Q2FW22 26464510
    182309 4wfa:M (3.392) BS01 rna ? GO:0003735 ... Q2FZ42 26464510
    182310 4wfa:N (3.392) BS01 rna ? GO:0000027 ... Q2FXQ1 26464510
    182311 4wfa:O (3.392) BS01 rna ? GO:0003723 ... Q2FXS8 26464510
    182312 4wfa:P (3.392) BS01 rna ? GO:0003735 ... Q2FW11 26464510
    182313 4wfa:Q (3.392) BS01 rna ? GO:0000027 ... Q2FW08 26464510
    182314 4wfa:R (3.392) BS01 rna ? GO:0003723 ... Q2FW17 26464510
    182315 4wfa:S (3.392) BS01 rna ? GO:0003723 ... Q2FJE0 26464510
    182316 4wfa:S (3.392) BS02 rna ? GO:0003723 ... Q2FJE0 26464510
    182317 4wfa:T (3.392) BS01 rna ? GO:0003735 ... Q2FXT0 26464510
    182318 4wfa:U (3.392) BS01 rna ? GO:0003735 ... Q2FZ60 26464510
    182319 4wfa:V (3.392) BS01 rna ? GO:0003735 ... Q2FW14 26464510
    182320 4wfa:W (3.392) BS01 rna ? GO:0003735 ... P0A0G2 26464510
    182321 4wfa:W (3.392) BS02 rna ? GO:0003735 ... P0A0G2 26464510
    182322 4wfa:Z (3.392) BS01 rna ? GO:0003735 ... Q2FZF1 26464510
    182323 4wfb:2 (3.43) BS01 rna ? GO:0003735 ... Q2FUQ0 26464510
    182324 4wfb:3 (3.43) BS01 rna ? GO:0003735 ... Q2FXQ0 26464510
    182325 4wfb:4 (3.43) BS01 rna ? GO:0003735 ... Q2FW29 26464510
    182326 4wfb:A (3.43) BS01 rna ? GO:0002181 ... P60430 26464510
    182327 4wfb:B (3.43) BS01 rna ? GO:0003735 ... Q2FW06 26464510
    182328 4wfb:B (3.43) BS02 MN ? GO:0003735 ... Q2FW06 26464510
    182329 4wfb:C (3.43) BS01 rna ? GO:0003735 ... Q2FW07 26464510
    182330 4wfb:D (3.43) BS01 rna ? GO:0000049 ... Q2FW18 26464510
    182331 4wfb:D (3.43) BS02 rna ? GO:0000049 ... Q2FW18 26464510
    182332 4wfb:E (3.43) BS01 rna ? GO:0002181 ... Q2FW21 26464510
    182333 4wfb:G (3.43) BS01 rna ? GO:0003729 ... Q2FW38 26464510
    182334 4wfb:H (3.43) BS01 rna ? GO:0003735 ... Q2FW16 26464510
    182335 4wfb:I (3.43) BS01 rna ? GO:0003735 ... P0A0F8 26464510
    182336 4wfb:J (3.43) BS01 rna ? GO:0000049 ... Q2FW13 26464510
    182337 4wfb:J (3.43) BS02 rna ? GO:0000049 ... Q2FW13 26464510
    182338 4wfb:K (3.43) BS01 rna ? GO:0003735 ... Q2FW33 26464510
    182339 4wfb:L (3.43) BS01 rna ? GO:0003735 ... Q2FW22 26464510
    182340 4wfb:L (3.43) BS02 rna ? GO:0003735 ... Q2FW22 26464510
    182341 4wfb:M (3.43) BS01 rna ? GO:0003735 ... Q2FZ42 26464510
    182342 4wfb:N (3.43) BS01 rna ? GO:0000027 ... Q2FXQ1 26464510
    182343 4wfb:O (3.43) BS01 rna ? GO:0003723 ... Q2FXS8 26464510
    182344 4wfb:P (3.43) BS01 rna ? GO:0003735 ... Q2FW11 26464510
    182345 4wfb:Q (3.43) BS01 rna ? GO:0000027 ... Q2FW08 26464510
    182346 4wfb:R (3.43) BS01 rna ? GO:0003723 ... Q2FW17 26464510
    182347 4wfb:S (3.43) BS01 rna ? GO:0003723 ... Q2G0S0 26464510
    182348 4wfb:T (3.43) BS01 rna ? GO:0003735 ... Q2FXT0 26464510
    182349 4wfb:U (3.43) BS01 rna ? GO:0003735 ... Q2FZ60 26464510
    182350 4wfb:V (3.43) BS01 rna ? GO:0003735 ... Q2FW14 26464510
    182351 4wfb:W (3.43) BS01 rna ? GO:0003735 ... P0A0G2 26464510
    182352 4wfb:W (3.43) BS02 rna ? GO:0003735 ... P0A0G2 26464510
    182353 4wfb:Z (3.43) BS01 rna ? GO:0003735 ... Q2FZF1 26464510
    182354 4wfd:A (2.4) BS01 peptide 3.1.13.- GO:0000176 ... Q12149 25319414
    182355 4wfe:A (2.5) BS01 CA ? GO:0005267 ... Q9NYG8 25471887
    182356 4wfe:A (2.5) BS02 CA ? GO:0005267 ... Q9NYG8 25471887
    182357 4wff:A (2.5) BS01 CA ? GO:0005267 ... Q9NYG8 25471887
    182358 4wff:A (2.5) BS02 CA ? GO:0005267 ... Q9NYG8 25471887
    182359 4wfg:A (3.0) BS01 CA ? GO:0005267 ... Q9NYG8 25471887
    182360 4wfg:A (3.0) BS02 CA ? GO:0005267 ... Q9NYG8 25471887
    182361 4wfh:A (3.01) BS01 CA ? GO:0005267 ... Q9NYG8 25471887
    182362 4wfh:A (3.01) BS02 CA ? GO:0005267 ... Q9NYG8 25471887
    182363 4wfn:1 (3.54) BS01 rna ? GO:0000049 ... Q9RSS4 28689968
    182364 4wfn:2 (3.54) BS01 rna ? GO:0003735 ... Q9RSH2 28689968
    182365 4wfn:3 (3.54) BS01 rna ? GO:0003735 ... Q9RSW6 28689968
    182366 4wfn:A (3.54) BS01 rna ? GO:0002181 ... Q9RXJ9 28689968
    182367 4wfn:B (3.54) BS01 rna ? GO:0003735 ... Q9RXK2 28689968
    182368 4wfn:C (3.54) BS01 rna ? GO:0003735 ... Q9RXK1 28689968
    182369 4wfn:D (3.54) BS01 rna ? GO:0000049 ... Q9RXJ0 28689968
    182370 4wfn:D (3.54) BS02 rna ? GO:0000049 ... Q9RXJ0 28689968
    182371 4wfn:E (3.54) BS01 rna ? GO:0002181 ... Q9RSL3 28689968
    182372 4wfn:G (3.54) BS01 rna ? GO:0003729 ... Q9RXY1 28689968
    182373 4wfn:H (3.54) BS01 rna ? GO:0003735 ... Q9RXJ2 28689968
    182374 4wfn:I (3.54) BS01 rna ? GO:0003735 ... Q9RSK9 28689968
    182375 4wfn:J (3.54) BS01 rna ? GO:0000049 ... Q9RXJ5 28689968
    182376 4wfn:J (3.54) BS02 rna ? GO:0000049 ... Q9RXJ5 28689968
    182377 4wfn:K (3.54) BS01 rna ? GO:0003735 ... Q9RSJ5 28689968
    182378 4wfn:K (3.54) BS02 MG ? GO:0003735 ... Q9RSJ5 28689968
    182379 4wfn:L (3.54) BS01 rna ? GO:0003735 ... Q9RSL2 28689968
    182380 4wfn:L (3.54) BS02 rna ? GO:0003735 ... Q9RSL2 28689968
    182381 4wfn:M (3.54) BS01 rna ? GO:0003735 ... Q9RWB4 28689968
    182382 4wfn:N (3.54) BS01 rna ? GO:0000027 ... Q9RSW7 28689968
    182383 4wfn:O (3.54) BS01 rna ? GO:0003723 ... Q9RY64 28689968
    182384 4wfn:P (3.54) BS01 rna ? GO:0003735 ... Q9RXJ7 28689968
    182385 4wfn:Q (3.54) BS01 rna ? GO:0000027 ... Q9RXK0 28689968
    182386 4wfn:R (3.54) BS01 rna ? GO:0003723 ... Q9RXJ1 28689968
    182387 4wfn:S (3.54) BS01 rna ? GO:0000049 ... Q9RX88 28689968
    182388 4wfn:S (3.54) BS02 rna ? GO:0000049 ... Q9RX88 28689968
    182389 4wfn:T (3.54) BS01 rna ? GO:0000049 ... Q9RY65 28689968
    182390 4wfn:U (3.54) BS01 rna ? GO:0003735 ... Q9RRG8 28689968
    182391 4wfn:V (3.54) BS01 rna ? GO:0003735 ... Q9RXJ4 28689968
    182392 4wfn:W (3.54) BS01 rna ? GO:0003735 ... Q9RSL0 28689968
    182393 4wfn:Z (3.54) BS01 rna ? GO:0003735 ... P49228 28689968
    182394 4wfo:A (1.14) BS01 MN 1.13.11.12 GO:0005506 ... P08170 N/A
    182395 4wfr:A (2.0) BS01 2AM 3.1.4.37 GO:0004113 ... P16330 26563764
    182396 4wg3:A (2.2) BS01 UWA 2.7.11.17 GO:0004672 ... Q9BJF5 N/A BindingDB: IC50=10.8nM
    182397 4wg4:A (2.3) BS01 UWB 2.7.11.17 GO:0004672 ... Q9BJF5 N/A BindingDB: IC50=19.1nM
    182398 4wg5:A (2.3) BS01 UW3 2.7.11.17 GO:0004672 ... Q9BJF5 N/A BindingDB: IC50=19.0nM
    182399 4wgi:A (1.85) BS01 GLC ? GO:0008643 ... P0AEY0
    Q07820    		 25516789
    182400 4wgi:A (1.85) BS02 GLC ? GO:0008643 ... P0AEY0
    Q07820    		 25516789
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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