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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181601 4w2i:BV (2.7) BS01 rna ? GO:0003723 ... P60492 25306922
    181602 4w2i:BV (2.7) BS02 MG ? GO:0003723 ... P60492 25306922
    181603 4w2i:BV (2.7) BS03 MG ? GO:0003723 ... P60492 25306922
    181604 4w2i:BV (2.7) BS04 MG ? GO:0003723 ... P60492 25306922
    181605 4w2i:BV (2.7) BS05 MG ? GO:0003723 ... P60492 25306922
    181606 4w2i:BV (2.7) BS06 MG ? GO:0003723 ... P60492 25306922
    181607 4w2i:BV (2.7) BS07 MG ? GO:0003723 ... P60492 25306922
    181608 4w2i:BW (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 25306922
    181609 4w2i:BW (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 25306922
    181610 4w2i:BW (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 25306922
    181611 4w2i:BX (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 25306922
    181612 4w2i:BX (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 25306922
    181613 4w2i:BX (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 25306922
    181614 4w2i:BY (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 25306922
    181615 4w2i:BY (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 25306922
    181616 4w2i:BZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 25306922
    181617 4w2i:BZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 25306922
    181618 4w2i:CB (2.7) BS01 rna ? GO:0003735 ... P80371 25306922
    181619 4w2i:CC (2.7) BS01 rna ? GO:0003676 ... P80372 25306922
    181620 4w2i:CD (2.7) BS01 rna ? GO:0003723 ... P80373 25306922
    181621 4w2i:CD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306922
    181622 4w2i:CE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 25306922
    181623 4w2i:CE (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 25306922
    181624 4w2i:CE (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 25306922
    181625 4w2i:CF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 25306922
    181626 4w2i:CG (2.7) BS01 rna ? GO:0000028 ... P17291 25306922
    181627 4w2i:CG (2.7) BS02 rna ? GO:0000028 ... P17291 25306922
    181628 4w2i:CH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181629 4w2i:CI (2.7) BS01 rna ? GO:0000049 ... P80374 25306922
    181630 4w2i:CI (2.7) BS02 rna ? GO:0000049 ... P80374 25306922
    181631 4w2i:CJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 25306922
    181632 4w2i:CJ (2.7) BS02 MG ? GO:0000049 ... Q5SHN7 25306922
    181633 4w2i:CK (2.7) BS01 rna ? GO:0003735 ... P80376 25306922
    181634 4w2i:CK (2.7) BS02 MG ? GO:0003735 ... P80376 25306922
    181635 4w2i:CL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 25306922
    181636 4w2i:CL (2.7) BS02 rna ? GO:0000049 ... Q5SHN3 25306922
    181637 4w2i:CL (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 25306922
    181638 4w2i:CM (2.7) BS01 rna ? GO:0000049 ... P80377 25306922
    181639 4w2i:CM (2.7) BS02 rna ? GO:0000049 ... P80377 25306922
    181640 4w2i:CN (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181641 4w2i:CN (2.7) BS02 ZN N/A GO:0003735 ... N/A 25306922
    181642 4w2i:CO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 25306922
    181643 4w2i:CO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 25306922
    181644 4w2i:CP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 25306922
    181645 4w2i:CQ (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181646 4w2i:CR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 25306922
    181647 4w2i:CS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 25306922
    181648 4w2i:CT (2.7) BS01 rna ? GO:0003723 ... P80380 25306922
    181649 4w2i:CT (2.7) BS02 MG ? GO:0003723 ... P80380 25306922
    181650 4w2i:D0 (2.7) BS01 rna ? GO:0003735 ... P60493 25306922
    181651 4w2i:D0 (2.7) BS02 rna ? GO:0003735 ... P60493 25306922
    181652 4w2i:D0 (2.7) BS03 rna ? GO:0003735 ... P60493 25306922
    181653 4w2i:D1 (2.7) BS01 rna ? GO:0003735 ... P60494 25306922
    181654 4w2i:D1 (2.7) BS02 rna ? GO:0003735 ... P60494 25306922
    181655 4w2i:D2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 25306922
    181656 4w2i:D3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 25306922
    181657 4w2i:D3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 25306922
    181658 4w2i:D3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 25306922
    181659 4w2i:D4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 25306922
    181660 4w2i:D4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 25306922
    181661 4w2i:D5 (2.7) BS01 rna ? GO:0003735 ... P80339 25306922
    181662 4w2i:D5 (2.7) BS02 ZN ? GO:0003735 ... P80339 25306922
    181663 4w2i:D6 (2.7) BS01 rna ? GO:0000049 ... P35871 25306922
    181664 4w2i:D6 (2.7) BS02 ZN ? GO:0000049 ... P35871 25306922
    181665 4w2i:D7 (2.7) BS01 rna ? GO:0003735 ... P80340 25306922
    181666 4w2i:D7 (2.7) BS02 MG ? GO:0003735 ... P80340 25306922
    181667 4w2i:D7 (2.7) BS03 MG ? GO:0003735 ... P80340 25306922
    181668 4w2i:D8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 25306922
    181669 4w2i:D9 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 25306922
    181670 4w2i:D9 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 25306922
    181671 4w2i:DD (2.7) BS01 rna ? GO:0002181 ... P60405 25306922
    181672 4w2i:DD (2.7) BS02 rna ? GO:0002181 ... P60405 25306922
    181673 4w2i:DD (2.7) BS03 MG ? GO:0002181 ... P60405 25306922
    181674 4w2i:DD (2.7) BS04 MG ? GO:0002181 ... P60405 25306922
    181675 4w2i:DD (2.7) BS05 MG ? GO:0002181 ... P60405 25306922
    181676 4w2i:DD (2.7) BS06 MG ? GO:0002181 ... P60405 25306922
    181677 4w2i:DD (2.7) BS07 MG ? GO:0002181 ... P60405 25306922
    181678 4w2i:DD (2.7) BS08 MG ? GO:0002181 ... P60405 25306922
    181679 4w2i:DD (2.7) BS09 MG ? GO:0002181 ... P60405 25306922
    181680 4w2i:DD (2.7) BS10 MG ? GO:0002181 ... P60405 25306922
    181681 4w2i:DE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 25306922
    181682 4w2i:DE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 25306922
    181683 4w2i:DE (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 25306922
    181684 4w2i:DF (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 25306922
    181685 4w2i:DF (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 25306922
    181686 4w2i:DF (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 25306922
    181687 4w2i:DF (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 25306922
    181688 4w2i:DF (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 25306922
    181689 4w2i:DG (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 25306922
    181690 4w2i:DG (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 25306922
    181691 4w2i:DG (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 25306922
    181692 4w2i:DG (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 25306922
    181693 4w2i:DH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181694 4w2i:DI (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 25306922
    181695 4w2i:DN (2.7) BS01 rna ? GO:0003729 ... P60488 25306922
    181696 4w2i:DO (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 25306922
    181697 4w2i:DO (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 25306922
    181698 4w2i:DO (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 25306922
    181699 4w2i:DP (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 25306922
    181700 4w2i:DP (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 25306922
    181701 4w2i:DQ (2.7) BS01 rna ? GO:0000049 ... P60489 25306922
    181702 4w2i:DQ (2.7) BS02 rna ? GO:0000049 ... P60489 25306922
    181703 4w2i:DQ (2.7) BS03 rna ? GO:0000049 ... P60489 25306922
    181704 4w2i:DQ (2.7) BS04 MG ? GO:0000049 ... P60489 25306922
    181705 4w2i:DQ (2.7) BS05 MG ? GO:0000049 ... P60489 25306922
    181706 4w2i:DQ (2.7) BS06 MG ? GO:0000049 ... P60489 25306922
    181707 4w2i:DR (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 25306922
    181708 4w2i:DS (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 25306922
    181709 4w2i:DS (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 25306922
    181710 4w2i:DT (2.7) BS01 rna ? GO:0003735 ... P60490 25306922
    181711 4w2i:DT (2.7) BS02 rna ? GO:0003735 ... P60490 25306922
    181712 4w2i:DU (2.7) BS01 rna ? GO:0000027 ... P60491 25306922
    181713 4w2i:DU (2.7) BS02 MG ? GO:0000027 ... P60491 25306922
    181714 4w2i:DU (2.7) BS03 MG ? GO:0000027 ... P60491 25306922
    181715 4w2i:DU (2.7) BS04 MG ? GO:0000027 ... P60491 25306922
    181716 4w2i:DV (2.7) BS01 rna ? GO:0003723 ... P60492 25306922
    181717 4w2i:DV (2.7) BS02 MG ? GO:0003723 ... P60492 25306922
    181718 4w2i:DV (2.7) BS03 MG ? GO:0003723 ... P60492 25306922
    181719 4w2i:DV (2.7) BS04 MG ? GO:0003723 ... P60492 25306922
    181720 4w2i:DW (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 25306922
    181721 4w2i:DW (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 25306922
    181722 4w2i:DW (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 25306922
    181723 4w2i:DX (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 25306922
    181724 4w2i:DY (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 25306922
    181725 4w2i:DY (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 25306922
    181726 4w2i:DZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 25306922
    181727 4w2i:DZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 25306922
    181728 4w4g:QB (3.3) BS01 rna ? GO:0003735 ... P80371 26508639
    181729 4w4g:QC (3.3) BS01 rna ? GO:0003676 ... P80372 26508639
    181730 4w4g:QD (3.3) BS01 rna ? GO:0003723 ... P80373 26508639
    181731 4w4g:QE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 26508639
    181732 4w4g:QF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 26508639
    181733 4w4g:QG (3.3) BS01 rna ? GO:0000028 ... P17291 26508639
    181734 4w4g:QG (3.3) BS02 rna ? GO:0000028 ... P17291 26508639
    181735 4w4g:QH (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    181736 4w4g:QI (3.3) BS01 rna ? GO:0000049 ... P80374 26508639
    181737 4w4g:QI (3.3) BS02 rna ? GO:0000049 ... P80374 26508639
    181738 4w4g:QJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 26508639
    181739 4w4g:QK (3.3) BS01 rna ? GO:0003735 ... P80376 26508639
    181740 4w4g:QK (3.3) BS02 MG ? GO:0003735 ... P80376 26508639
    181741 4w4g:QL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 26508639
    181742 4w4g:QL (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 26508639
    181743 4w4g:QM (3.3) BS01 rna ? GO:0000049 ... P80377 26508639
    181744 4w4g:QN (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    181745 4w4g:QN (3.3) BS02 ZN N/A GO:0003735 ... N/A 26508639
    181746 4w4g:QO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 26508639
    181747 4w4g:QO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 26508639
    181748 4w4g:QP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 26508639
    181749 4w4g:QQ (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    181750 4w4g:QR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 26508639
    181751 4w4g:QS (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 26508639
    181752 4w4g:QT (3.3) BS01 rna ? GO:0003723 ... P80380 26508639
    181753 4w4g:R0 (3.3) BS01 rna ? GO:0003735 ... P60493 26508639
    181754 4w4g:R0 (3.3) BS02 rna ? GO:0003735 ... P60493 26508639
    181755 4w4g:R1 (3.3) BS01 rna ? GO:0003735 ... P60494 26508639
    181756 4w4g:R1 (3.3) BS02 rna ? GO:0003735 ... P60494 26508639
    181757 4w4g:R2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 26508639
    181758 4w4g:R3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 26508639
    181759 4w4g:R3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 26508639
    181760 4w4g:R4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 26508639
    181761 4w4g:R4 (3.3) BS02 rna ? GO:0003735 ... Q5SJE1 26508639
    181762 4w4g:R5 (3.3) BS01 rna ? GO:0003735 ... P80339 26508639
    181763 4w4g:R5 (3.3) BS02 MG ? GO:0003735 ... P80339 26508639
    181764 4w4g:R6 (3.3) BS01 rna ? GO:0000049 ... P35871 26508639
    181765 4w4g:R7 (3.3) BS01 rna ? GO:0003735 ... P80340 26508639
    181766 4w4g:R8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 26508639
    181767 4w4g:R9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 26508639
    181768 4w4g:RD (3.3) BS01 rna ? GO:0002181 ... P60405 26508639
    181769 4w4g:RD (3.3) BS02 rna ? GO:0002181 ... P60405 26508639
    181770 4w4g:RE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 26508639
    181771 4w4g:RF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 26508639
    181772 4w4g:RG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 26508639
    181773 4w4g:RG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 26508639
    181774 4w4g:RG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 26508639
    181775 4w4g:RH (3.3) BS01 rna N/A GO:0003735 ... N/A 26508639
    181776 4w4g:RI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 26508639
    181777 4w4g:RN (3.3) BS01 rna ? GO:0003729 ... P60488 26508639
    181778 4w4g:RO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 26508639
    181779 4w4g:RO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 26508639
    181780 4w4g:RP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 26508639
    181781 4w4g:RP (3.3) BS02 MG ? GO:0003735 ... Q5SHQ7 26508639
    181782 4w4g:RQ (3.3) BS01 rna ? GO:0000049 ... P60489 26508639
    181783 4w4g:RQ (3.3) BS02 rna ? GO:0000049 ... P60489 26508639
    181784 4w4g:RQ (3.3) BS03 MG ? GO:0000049 ... P60489 26508639
    181785 4w4g:RR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 26508639
    181786 4w4g:RS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 26508639
    181787 4w4g:RS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 26508639
    181788 4w4g:RT (3.3) BS01 rna ? GO:0003735 ... P60490 26508639
    181789 4w4g:RT (3.3) BS02 rna ? GO:0003735 ... P60490 26508639
    181790 4w4g:RU (3.3) BS01 rna ? GO:0000027 ... P60491 26508639
    181791 4w4g:RV (3.3) BS01 rna ? GO:0003723 ... P60492 26508639
    181792 4w4g:RW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 26508639
    181793 4w4g:RX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 26508639
    181794 4w4g:RY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 26508639
    181795 4w4g:RZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 26508639
    181796 4w4g:RZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 26508639
    181797 4w4g:XB (3.3) BS01 rna ? GO:0003735 ... P80371 26508639
    181798 4w4g:XC (3.3) BS01 rna ? GO:0003676 ... P80372 26508639
    181799 4w4g:XD (3.3) BS01 rna ? GO:0003723 ... P80373 26508639
    181800 4w4g:XD (3.3) BS02 MG ? GO:0003723 ... P80373 26508639
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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