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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181401 4w2h:CM (2.7) BS01 rna ? GO:0000049 ... P80377 25306919
    181402 4w2h:CM (2.7) BS02 rna ? GO:0000049 ... P80377 25306919
    181403 4w2h:CN (2.7) BS01 rna N/A GO:0003735 ... N/A 25306919
    181404 4w2h:CN (2.7) BS02 ZN N/A GO:0003735 ... N/A 25306919
    181405 4w2h:CO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    181406 4w2h:CO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    181407 4w2h:CP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    181408 4w2h:CQ (2.7) BS01 rna N/A GO:0003735 ... N/A 25306919
    181409 4w2h:CR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    181410 4w2h:CS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    181411 4w2h:CT (2.7) BS01 rna ? GO:0003723 ... P80380 25306919
    181412 4w2h:D0 (2.7) BS01 rna ? GO:0003735 ... P60493 25306919
    181413 4w2h:D0 (2.7) BS02 rna ? GO:0003735 ... P60493 25306919
    181414 4w2h:D0 (2.7) BS03 rna ? GO:0003735 ... P60493 25306919
    181415 4w2h:D1 (2.7) BS01 rna ? GO:0003735 ... P60494 25306919
    181416 4w2h:D1 (2.7) BS02 rna ? GO:0003735 ... P60494 25306919
    181417 4w2h:D2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    181418 4w2h:D3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    181419 4w2h:D3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    181420 4w2h:D3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    181421 4w2h:D4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    181422 4w2h:D4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    181423 4w2h:D5 (2.7) BS01 rna ? GO:0003735 ... P80339 25306919
    181424 4w2h:D5 (2.7) BS02 ZN ? GO:0003735 ... P80339 25306919
    181425 4w2h:D6 (2.7) BS01 rna ? GO:0000049 ... P35871 25306919
    181426 4w2h:D6 (2.7) BS02 ZN ? GO:0000049 ... P35871 25306919
    181427 4w2h:D7 (2.7) BS01 rna ? GO:0003735 ... P80340 25306919
    181428 4w2h:D8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    181429 4w2h:D9 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    181430 4w2h:D9 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    181431 4w2h:DD (2.7) BS01 rna ? GO:0002181 ... P60405 25306919
    181432 4w2h:DD (2.7) BS02 rna ? GO:0002181 ... P60405 25306919
    181433 4w2h:DD (2.7) BS03 MG ? GO:0002181 ... P60405 25306919
    181434 4w2h:DD (2.7) BS04 MG ? GO:0002181 ... P60405 25306919
    181435 4w2h:DD (2.7) BS05 MG ? GO:0002181 ... P60405 25306919
    181436 4w2h:DD (2.7) BS06 MG ? GO:0002181 ... P60405 25306919
    181437 4w2h:DD (2.7) BS07 MG ? GO:0002181 ... P60405 25306919
    181438 4w2h:DD (2.7) BS08 MG ? GO:0002181 ... P60405 25306919
    181439 4w2h:DD (2.7) BS09 MG ? GO:0002181 ... P60405 25306919
    181440 4w2h:DE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    181441 4w2h:DE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    181442 4w2h:DF (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    181443 4w2h:DF (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    181444 4w2h:DF (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    181445 4w2h:DF (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    181446 4w2h:DF (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    181447 4w2h:DG (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    181448 4w2h:DG (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    181449 4w2h:DG (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    181450 4w2h:DH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306919
    181451 4w2h:DI (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    181452 4w2h:DN (2.7) BS01 rna ? GO:0003729 ... P60488 25306919
    181453 4w2h:DO (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    181454 4w2h:DO (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    181455 4w2h:DP (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    181456 4w2h:DP (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 25306919
    181457 4w2h:DQ (2.7) BS01 rna ? GO:0000049 ... P60489 25306919
    181458 4w2h:DQ (2.7) BS02 rna ? GO:0000049 ... P60489 25306919
    181459 4w2h:DQ (2.7) BS03 MG ? GO:0000049 ... P60489 25306919
    181460 4w2h:DQ (2.7) BS04 MG ? GO:0000049 ... P60489 25306919
    181461 4w2h:DQ (2.7) BS05 MG ? GO:0000049 ... P60489 25306919
    181462 4w2h:DR (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    181463 4w2h:DS (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    181464 4w2h:DS (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    181465 4w2h:DT (2.7) BS01 rna ? GO:0003735 ... P60490 25306919
    181466 4w2h:DT (2.7) BS02 rna ? GO:0003735 ... P60490 25306919
    181467 4w2h:DU (2.7) BS01 rna ? GO:0000027 ... P60491 25306919
    181468 4w2h:DU (2.7) BS02 MG ? GO:0000027 ... P60491 25306919
    181469 4w2h:DU (2.7) BS03 MG ? GO:0000027 ... P60491 25306919
    181470 4w2h:DU (2.7) BS04 MG ? GO:0000027 ... P60491 25306919
    181471 4w2h:DV (2.7) BS01 rna ? GO:0003723 ... P60492 25306919
    181472 4w2h:DV (2.7) BS02 MG ? GO:0003723 ... P60492 25306919
    181473 4w2h:DV (2.7) BS03 MG ? GO:0003723 ... P60492 25306919
    181474 4w2h:DV (2.7) BS04 MG ? GO:0003723 ... P60492 25306919
    181475 4w2h:DW (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    181476 4w2h:DW (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    181477 4w2h:DW (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    181478 4w2h:DX (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 25306919
    181479 4w2h:DY (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    181480 4w2h:DY (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 25306919
    181481 4w2h:DZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    181482 4w2h:DZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    181483 4w2i:AB (2.7) BS01 rna ? GO:0003735 ... P80371 25306922
    181484 4w2i:AC (2.7) BS01 rna ? GO:0003676 ... P80372 25306922
    181485 4w2i:AD (2.7) BS01 rna ? GO:0003723 ... P80373 25306922
    181486 4w2i:AD (2.7) BS02 SF4 ? GO:0003723 ... P80373 25306922
    181487 4w2i:AE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 25306922
    181488 4w2i:AE (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 25306922
    181489 4w2i:AE (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 25306922
    181490 4w2i:AF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 25306922
    181491 4w2i:AG (2.7) BS01 rna ? GO:0000028 ... P17291 25306922
    181492 4w2i:AG (2.7) BS02 rna ? GO:0000028 ... P17291 25306922
    181493 4w2i:AH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181494 4w2i:AI (2.7) BS01 rna ? GO:0000049 ... P80374 25306922
    181495 4w2i:AJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 25306922
    181496 4w2i:AK (2.7) BS01 rna ? GO:0003735 ... P80376 25306922
    181497 4w2i:AK (2.7) BS02 MG ? GO:0003735 ... P80376 25306922
    181498 4w2i:AL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 25306922
    181499 4w2i:AL (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 25306922
    181500 4w2i:AM (2.7) BS01 rna ? GO:0000049 ... P80377 25306922
    181501 4w2i:AM (2.7) BS02 rna ? GO:0000049 ... P80377 25306922
    181502 4w2i:AM (2.7) BS03 rna ? GO:0000049 ... P80377 25306922
    181503 4w2i:AM (2.7) BS04 MG ? GO:0000049 ... P80377 25306922
    181504 4w2i:AN (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181505 4w2i:AN (2.7) BS02 ZN N/A GO:0003735 ... N/A 25306922
    181506 4w2i:AO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 25306922
    181507 4w2i:AO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 25306922
    181508 4w2i:AP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 25306922
    181509 4w2i:AQ (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181510 4w2i:AR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 25306922
    181511 4w2i:AS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 25306922
    181512 4w2i:AT (2.7) BS01 rna ? GO:0003723 ... P80380 25306922
    181513 4w2i:B0 (2.7) BS01 rna ? GO:0003735 ... P60493 25306922
    181514 4w2i:B0 (2.7) BS02 rna ? GO:0003735 ... P60493 25306922
    181515 4w2i:B0 (2.7) BS03 MG ? GO:0003735 ... P60493 25306922
    181516 4w2i:B1 (2.7) BS01 rna ? GO:0003735 ... P60494 25306922
    181517 4w2i:B1 (2.7) BS02 rna ? GO:0003735 ... P60494 25306922
    181518 4w2i:B1 (2.7) BS03 MG ? GO:0003735 ... P60494 25306922
    181519 4w2i:B2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 25306922
    181520 4w2i:B3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 25306922
    181521 4w2i:B3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 25306922
    181522 4w2i:B3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 25306922
    181523 4w2i:B4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 25306922
    181524 4w2i:B4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 25306922
    181525 4w2i:B5 (2.7) BS01 rna ? GO:0003735 ... P80339 25306922
    181526 4w2i:B5 (2.7) BS02 MG ? GO:0003735 ... P80339 25306922
    181527 4w2i:B5 (2.7) BS03 MG ? GO:0003735 ... P80339 25306922
    181528 4w2i:B5 (2.7) BS04 ZN ? GO:0003735 ... P80339 25306922
    181529 4w2i:B6 (2.7) BS01 rna ? GO:0000049 ... P35871 25306922
    181530 4w2i:B6 (2.7) BS02 ZN ? GO:0000049 ... P35871 25306922
    181531 4w2i:B7 (2.7) BS01 rna ? GO:0003735 ... P80340 25306922
    181532 4w2i:B7 (2.7) BS02 MG ? GO:0003735 ... P80340 25306922
    181533 4w2i:B7 (2.7) BS03 MG ? GO:0003735 ... P80340 25306922
    181534 4w2i:B7 (2.7) BS04 MG ? GO:0003735 ... P80340 25306922
    181535 4w2i:B8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 25306922
    181536 4w2i:B8 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 25306922
    181537 4w2i:B9 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 25306922
    181538 4w2i:B9 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 25306922
    181539 4w2i:BD (2.7) BS01 rna ? GO:0002181 ... P60405 25306922
    181540 4w2i:BD (2.7) BS02 rna ? GO:0002181 ... P60405 25306922
    181541 4w2i:BD (2.7) BS03 MG ? GO:0002181 ... P60405 25306922
    181542 4w2i:BD (2.7) BS04 MG ? GO:0002181 ... P60405 25306922
    181543 4w2i:BD (2.7) BS05 MG ? GO:0002181 ... P60405 25306922
    181544 4w2i:BD (2.7) BS06 MG ? GO:0002181 ... P60405 25306922
    181545 4w2i:BD (2.7) BS07 MG ? GO:0002181 ... P60405 25306922
    181546 4w2i:BD (2.7) BS08 MG ? GO:0002181 ... P60405 25306922
    181547 4w2i:BD (2.7) BS09 MG ? GO:0002181 ... P60405 25306922
    181548 4w2i:BD (2.7) BS10 MG ? GO:0002181 ... P60405 25306922
    181549 4w2i:BD (2.7) BS11 MG ? GO:0002181 ... P60405 25306922
    181550 4w2i:BD (2.7) BS12 MG ? GO:0002181 ... P60405 25306922
    181551 4w2i:BD (2.7) BS13 MG ? GO:0002181 ... P60405 25306922
    181552 4w2i:BE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 25306922
    181553 4w2i:BE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 25306922
    181554 4w2i:BE (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 25306922
    181555 4w2i:BE (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 25306922
    181556 4w2i:BF (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 25306922
    181557 4w2i:BF (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 25306922
    181558 4w2i:BF (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 25306922
    181559 4w2i:BF (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 25306922
    181560 4w2i:BF (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 25306922
    181561 4w2i:BF (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 25306922
    181562 4w2i:BF (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 25306922
    181563 4w2i:BF (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 25306922
    181564 4w2i:BF (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 25306922
    181565 4w2i:BG (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 25306922
    181566 4w2i:BG (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 25306922
    181567 4w2i:BG (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 25306922
    181568 4w2i:BG (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 25306922
    181569 4w2i:BH (2.7) BS01 rna N/A GO:0003735 ... N/A 25306922
    181570 4w2i:BI (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 25306922
    181571 4w2i:BN (2.7) BS01 rna ? GO:0003729 ... P60488 25306922
    181572 4w2i:BN (2.7) BS02 MG ? GO:0003729 ... P60488 25306922
    181573 4w2i:BN (2.7) BS03 MG ? GO:0003729 ... P60488 25306922
    181574 4w2i:BN (2.7) BS04 MG ? GO:0003729 ... P60488 25306922
    181575 4w2i:BO (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 25306922
    181576 4w2i:BO (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 25306922
    181577 4w2i:BP (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 25306922
    181578 4w2i:BP (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 25306922
    181579 4w2i:BP (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 25306922
    181580 4w2i:BQ (2.7) BS01 rna ? GO:0000049 ... P60489 25306922
    181581 4w2i:BQ (2.7) BS02 rna ? GO:0000049 ... P60489 25306922
    181582 4w2i:BQ (2.7) BS03 rna ? GO:0000049 ... P60489 25306922
    181583 4w2i:BQ (2.7) BS04 MG ? GO:0000049 ... P60489 25306922
    181584 4w2i:BQ (2.7) BS05 MG ? GO:0000049 ... P60489 25306922
    181585 4w2i:BQ (2.7) BS06 MG ? GO:0000049 ... P60489 25306922
    181586 4w2i:BR (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 25306922
    181587 4w2i:BR (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 25306922
    181588 4w2i:BS (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 25306922
    181589 4w2i:BS (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 25306922
    181590 4w2i:BT (2.7) BS01 rna ? GO:0003735 ... P60490 25306922
    181591 4w2i:BT (2.7) BS02 rna ? GO:0003735 ... P60490 25306922
    181592 4w2i:BU (2.7) BS01 rna ? GO:0000027 ... P60491 25306922
    181593 4w2i:BU (2.7) BS02 MG ? GO:0000027 ... P60491 25306922
    181594 4w2i:BU (2.7) BS03 MG ? GO:0000027 ... P60491 25306922
    181595 4w2i:BU (2.7) BS04 MG ? GO:0000027 ... P60491 25306922
    181596 4w2i:BU (2.7) BS05 MG ? GO:0000027 ... P60491 25306922
    181597 4w2i:BU (2.7) BS06 MG ? GO:0000027 ... P60491 25306922
    181598 4w2i:BU (2.7) BS07 MG ? GO:0000027 ... P60491 25306922
    181599 4w2i:BU (2.7) BS08 MG ? GO:0000027 ... P60491 25306922
    181600 4w2i:BU (2.7) BS09 MG ? GO:0000027 ... P60491 25306922
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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