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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181001 4w2f:DW (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    181002 4w2f:DW (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    181003 4w2f:DX (2.4) BS01 rna ? GO:0000027 ... Q5SHP0 25306919
    181004 4w2f:DX (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 25306919
    181005 4w2f:DY (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    181006 4w2f:DY (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 25306919
    181007 4w2f:DZ (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    181008 4w2f:DZ (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    181009 4w2g:AB (2.55) BS01 rna ? GO:0003735 ... P80371 25306919
    181010 4w2g:AC (2.55) BS01 rna ? GO:0003676 ... P80372 25306919
    181011 4w2g:AD (2.55) BS01 rna ? GO:0003723 ... P80373 25306919
    181012 4w2g:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25306919
    181013 4w2g:AE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    181014 4w2g:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    181015 4w2g:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25306919
    181016 4w2g:AF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    181017 4w2g:AG (2.55) BS01 rna ? GO:0000028 ... P17291 25306919
    181018 4w2g:AG (2.55) BS02 rna ? GO:0000028 ... P17291 25306919
    181019 4w2g:AH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181020 4w2g:AI (2.55) BS01 rna ? GO:0000049 ... P80374 25306919
    181021 4w2g:AI (2.55) BS02 rna ? GO:0000049 ... P80374 25306919
    181022 4w2g:AJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    181023 4w2g:AK (2.55) BS01 rna ? GO:0003735 ... P80376 25306919
    181024 4w2g:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25306919
    181025 4w2g:AL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    181026 4w2g:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    181027 4w2g:AM (2.55) BS01 rna ? GO:0000049 ... P80377 25306919
    181028 4w2g:AM (2.55) BS02 rna ? GO:0000049 ... P80377 25306919
    181029 4w2g:AM (2.55) BS03 rna ? GO:0000049 ... P80377 25306919
    181030 4w2g:AM (2.55) BS04 rna ? GO:0000049 ... P80377 25306919
    181031 4w2g:AM (2.55) BS05 MG ? GO:0000049 ... P80377 25306919
    181032 4w2g:AN (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181033 4w2g:AN (2.55) BS02 ZN N/A GO:0003735 ... N/A 25306919
    181034 4w2g:AO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    181035 4w2g:AO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    181036 4w2g:AP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    181037 4w2g:AQ (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181038 4w2g:AR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    181039 4w2g:AS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    181040 4w2g:AS (2.55) BS02 MG ? GO:0000028 ... Q5SHP2 25306919
    181041 4w2g:AT (2.55) BS01 rna ? GO:0003723 ... P80380 25306919
    181042 4w2g:B0 (2.55) BS01 rna ? GO:0003735 ... P60493 25306919
    181043 4w2g:B0 (2.55) BS02 rna ? GO:0003735 ... P60493 25306919
    181044 4w2g:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25306919
    181045 4w2g:B1 (2.55) BS01 rna ? GO:0003735 ... P60494 25306919
    181046 4w2g:B1 (2.55) BS02 rna ? GO:0003735 ... P60494 25306919
    181047 4w2g:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25306919
    181048 4w2g:B2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    181049 4w2g:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    181050 4w2g:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    181051 4w2g:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    181052 4w2g:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    181053 4w2g:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25306919
    181054 4w2g:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25306919
    181055 4w2g:B5 (2.55) BS03 ZN ? GO:0003735 ... P80339 25306919
    181056 4w2g:B6 (2.55) BS01 rna ? GO:0000049 ... P35871 25306919
    181057 4w2g:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25306919
    181058 4w2g:B6 (2.55) BS03 MG ? GO:0000049 ... P35871 25306919
    181059 4w2g:B6 (2.55) BS04 ZN ? GO:0000049 ... P35871 25306919
    181060 4w2g:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25306919
    181061 4w2g:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25306919
    181062 4w2g:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25306919
    181063 4w2g:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    181064 4w2g:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25306919
    181065 4w2g:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    181066 4w2g:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    181067 4w2g:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25306919
    181068 4w2g:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25306919
    181069 4w2g:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25306919
    181070 4w2g:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25306919
    181071 4w2g:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25306919
    181072 4w2g:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25306919
    181073 4w2g:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25306919
    181074 4w2g:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25306919
    181075 4w2g:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25306919
    181076 4w2g:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25306919
    181077 4w2g:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25306919
    181078 4w2g:BD (2.55) BS12 MG ? GO:0002181 ... P60405 25306919
    181079 4w2g:BD (2.55) BS13 MG ? GO:0002181 ... P60405 25306919
    181080 4w2g:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    181081 4w2g:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    181082 4w2g:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25306919
    181083 4w2g:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25306919
    181084 4w2g:BE (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 25306919
    181085 4w2g:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    181086 4w2g:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    181087 4w2g:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    181088 4w2g:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    181089 4w2g:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    181090 4w2g:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25306919
    181091 4w2g:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25306919
    181092 4w2g:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25306919
    181093 4w2g:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25306919
    181094 4w2g:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25306919
    181095 4w2g:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    181096 4w2g:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    181097 4w2g:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    181098 4w2g:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    181099 4w2g:BH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181100 4w2g:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    181101 4w2g:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25306919
    181102 4w2g:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25306919
    181103 4w2g:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25306919
    181104 4w2g:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25306919
    181105 4w2g:BN (2.55) BS05 MG ? GO:0003729 ... P60488 25306919
    181106 4w2g:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    181107 4w2g:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    181108 4w2g:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    181109 4w2g:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25306919
    181110 4w2g:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25306919
    181111 4w2g:BQ (2.55) BS01 rna ? GO:0000049 ... P60489 25306919
    181112 4w2g:BQ (2.55) BS02 rna ? GO:0000049 ... P60489 25306919
    181113 4w2g:BQ (2.55) BS03 rna ? GO:0000049 ... P60489 25306919
    181114 4w2g:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25306919
    181115 4w2g:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25306919
    181116 4w2g:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25306919
    181117 4w2g:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25306919
    181118 4w2g:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    181119 4w2g:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25306919
    181120 4w2g:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25306919
    181121 4w2g:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    181122 4w2g:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    181123 4w2g:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25306919
    181124 4w2g:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25306919
    181125 4w2g:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25306919
    181126 4w2g:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25306919
    181127 4w2g:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25306919
    181128 4w2g:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25306919
    181129 4w2g:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25306919
    181130 4w2g:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25306919
    181131 4w2g:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25306919
    181132 4w2g:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25306919
    181133 4w2g:BU (2.55) BS09 MG ? GO:0000027 ... P60491 25306919
    181134 4w2g:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25306919
    181135 4w2g:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25306919
    181136 4w2g:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25306919
    181137 4w2g:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25306919
    181138 4w2g:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25306919
    181139 4w2g:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    181140 4w2g:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    181141 4w2g:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    181142 4w2g:BX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25306919
    181143 4w2g:BX (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 25306919
    181144 4w2g:BX (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 25306919
    181145 4w2g:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    181146 4w2g:BY (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 25306919
    181147 4w2g:BY (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 25306919
    181148 4w2g:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    181149 4w2g:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    181150 4w2g:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25306919
    181151 4w2g:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25306919
    181152 4w2g:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25306919
    181153 4w2g:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25306919
    181154 4w2g:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    181155 4w2g:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    181156 4w2g:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    181157 4w2g:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    181158 4w2g:CG (2.55) BS01 rna ? GO:0000028 ... P17291 25306919
    181159 4w2g:CG (2.55) BS02 rna ? GO:0000028 ... P17291 25306919
    181160 4w2g:CH (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181161 4w2g:CI (2.55) BS01 rna ? GO:0000049 ... P80374 25306919
    181162 4w2g:CI (2.55) BS02 rna ? GO:0000049 ... P80374 25306919
    181163 4w2g:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    181164 4w2g:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25306919
    181165 4w2g:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25306919
    181166 4w2g:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    181167 4w2g:CL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    181168 4w2g:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25306919
    181169 4w2g:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25306919
    181170 4w2g:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25306919
    181171 4w2g:CN (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181172 4w2g:CN (2.55) BS02 ZN N/A GO:0003735 ... N/A 25306919
    181173 4w2g:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    181174 4w2g:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    181175 4w2g:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    181176 4w2g:CQ (2.55) BS01 rna N/A GO:0003735 ... N/A 25306919
    181177 4w2g:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    181178 4w2g:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    181179 4w2g:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25306919
    181180 4w2g:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25306919
    181181 4w2g:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25306919
    181182 4w2g:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25306919
    181183 4w2g:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25306919
    181184 4w2g:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25306919
    181185 4w2g:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    181186 4w2g:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    181187 4w2g:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    181188 4w2g:D3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    181189 4w2g:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    181190 4w2g:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    181191 4w2g:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25306919
    181192 4w2g:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25306919
    181193 4w2g:D6 (2.55) BS01 rna ? GO:0000049 ... P35871 25306919
    181194 4w2g:D6 (2.55) BS02 ZN ? GO:0000049 ... P35871 25306919
    181195 4w2g:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25306919
    181196 4w2g:D7 (2.55) BS02 MG ? GO:0003735 ... P80340 25306919
    181197 4w2g:D7 (2.55) BS03 MG ? GO:0003735 ... P80340 25306919
    181198 4w2g:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    181199 4w2g:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    181200 4w2g:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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