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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180801 4w2f:B9 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    180802 4w2f:B9 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 25306919
    180803 4w2f:BD (2.4) BS01 rna ? GO:0002181 ... P60405 25306919
    180804 4w2f:BD (2.4) BS02 MG ? GO:0002181 ... P60405 25306919
    180805 4w2f:BD (2.4) BS03 MG ? GO:0002181 ... P60405 25306919
    180806 4w2f:BD (2.4) BS04 MG ? GO:0002181 ... P60405 25306919
    180807 4w2f:BD (2.4) BS05 MG ? GO:0002181 ... P60405 25306919
    180808 4w2f:BD (2.4) BS06 MG ? GO:0002181 ... P60405 25306919
    180809 4w2f:BD (2.4) BS07 MG ? GO:0002181 ... P60405 25306919
    180810 4w2f:BD (2.4) BS08 MG ? GO:0002181 ... P60405 25306919
    180811 4w2f:BD (2.4) BS09 MG ? GO:0002181 ... P60405 25306919
    180812 4w2f:BD (2.4) BS10 MG ? GO:0002181 ... P60405 25306919
    180813 4w2f:BD (2.4) BS11 MG ? GO:0002181 ... P60405 25306919
    180814 4w2f:BE (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    180815 4w2f:BE (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    180816 4w2f:BE (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 25306919
    180817 4w2f:BE (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 25306919
    180818 4w2f:BE (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 25306919
    180819 4w2f:BF (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    180820 4w2f:BF (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    180821 4w2f:BF (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    180822 4w2f:BF (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    180823 4w2f:BF (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 25306919
    180824 4w2f:BF (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 25306919
    180825 4w2f:BF (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 25306919
    180826 4w2f:BF (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 25306919
    180827 4w2f:BF (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 25306919
    180828 4w2f:BF (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 25306919
    180829 4w2f:BF (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 25306919
    180830 4w2f:BF (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 25306919
    180831 4w2f:BG (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    180832 4w2f:BG (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    180833 4w2f:BG (2.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    180834 4w2f:BG (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    180835 4w2f:BG (2.4) BS05 MG ? GO:0000049 ... Q5SHQ0 25306919
    180836 4w2f:BH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180837 4w2f:BI (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    180838 4w2f:BI (2.4) BS02 MG ? GO:0003735 ... Q5SLQ1 25306919
    180839 4w2f:BN (2.4) BS01 rna ? GO:0003729 ... P60488 25306919
    180840 4w2f:BN (2.4) BS02 MG ? GO:0003729 ... P60488 25306919
    180841 4w2f:BN (2.4) BS03 MG ? GO:0003729 ... P60488 25306919
    180842 4w2f:BO (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    180843 4w2f:BO (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    180844 4w2f:BO (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 25306919
    180845 4w2f:BO (2.4) BS04 MG ? GO:0003735 ... Q5SHP8 25306919
    180846 4w2f:BP (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    180847 4w2f:BP (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 25306919
    180848 4w2f:BP (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 25306919
    180849 4w2f:BP (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 25306919
    180850 4w2f:BP (2.4) BS05 MG ? GO:0003735 ... Q5SHQ7 25306919
    180851 4w2f:BP (2.4) BS06 MG ? GO:0003735 ... Q5SHQ7 25306919
    180852 4w2f:BQ (2.4) BS01 rna ? GO:0000049 ... P60489 25306919
    180853 4w2f:BQ (2.4) BS02 rna ? GO:0000049 ... P60489 25306919
    180854 4w2f:BQ (2.4) BS03 rna ? GO:0000049 ... P60489 25306919
    180855 4w2f:BQ (2.4) BS04 MG ? GO:0000049 ... P60489 25306919
    180856 4w2f:BQ (2.4) BS05 MG ? GO:0000049 ... P60489 25306919
    180857 4w2f:BQ (2.4) BS06 MG ? GO:0000049 ... P60489 25306919
    180858 4w2f:BQ (2.4) BS07 MG ? GO:0000049 ... P60489 25306919
    180859 4w2f:BQ (2.4) BS08 MG ? GO:0000049 ... P60489 25306919
    180860 4w2f:BR (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    180861 4w2f:BR (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 25306919
    180862 4w2f:BR (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 25306919
    180863 4w2f:BR (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 25306919
    180864 4w2f:BS (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    180865 4w2f:BS (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    180866 4w2f:BS (2.4) BS03 MG ? GO:0003735 ... Q5SHQ4 25306919
    180867 4w2f:BS (2.4) BS04 MG ? GO:0003735 ... Q5SHQ4 25306919
    180868 4w2f:BT (2.4) BS01 rna ? GO:0003735 ... P60490 25306919
    180869 4w2f:BT (2.4) BS02 rna ? GO:0003735 ... P60490 25306919
    180870 4w2f:BT (2.4) BS03 MG ? GO:0003735 ... P60490 25306919
    180871 4w2f:BU (2.4) BS01 rna ? GO:0000027 ... P60491 25306919
    180872 4w2f:BU (2.4) BS02 MG ? GO:0000027 ... P60491 25306919
    180873 4w2f:BU (2.4) BS03 MG ? GO:0000027 ... P60491 25306919
    180874 4w2f:BU (2.4) BS04 MG ? GO:0000027 ... P60491 25306919
    180875 4w2f:BU (2.4) BS05 MG ? GO:0000027 ... P60491 25306919
    180876 4w2f:BU (2.4) BS06 MG ? GO:0000027 ... P60491 25306919
    180877 4w2f:BU (2.4) BS07 MG ? GO:0000027 ... P60491 25306919
    180878 4w2f:BU (2.4) BS08 MG ? GO:0000027 ... P60491 25306919
    180879 4w2f:BU (2.4) BS09 MG ? GO:0000027 ... P60491 25306919
    180880 4w2f:BV (2.4) BS01 rna ? GO:0003723 ... P60492 25306919
    180881 4w2f:BV (2.4) BS02 MG ? GO:0003723 ... P60492 25306919
    180882 4w2f:BV (2.4) BS03 MG ? GO:0003723 ... P60492 25306919
    180883 4w2f:BV (2.4) BS04 MG ? GO:0003723 ... P60492 25306919
    180884 4w2f:BV (2.4) BS05 MG ? GO:0003723 ... P60492 25306919
    180885 4w2f:BV (2.4) BS06 MG ? GO:0003723 ... P60492 25306919
    180886 4w2f:BW (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 25306919
    180887 4w2f:BW (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 25306919
    180888 4w2f:BW (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 25306919
    180889 4w2f:BW (2.4) BS04 MG ? GO:0003735 ... Q5SHP3 25306919
    180890 4w2f:BW (2.4) BS05 MG ? GO:0003735 ... Q5SHP3 25306919
    180891 4w2f:BX (2.4) BS01 rna ? GO:0000027 ... Q5SHP0 25306919
    180892 4w2f:BX (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 25306919
    180893 4w2f:BX (2.4) BS03 MG ? GO:0000027 ... Q5SHP0 25306919
    180894 4w2f:BX (2.4) BS04 MG ? GO:0000027 ... Q5SHP0 25306919
    180895 4w2f:BX (2.4) BS05 MG ? GO:0000027 ... Q5SHP0 25306919
    180896 4w2f:BX (2.4) BS06 MG ? GO:0000027 ... Q5SHP0 25306919
    180897 4w2f:BY (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 25306919
    180898 4w2f:BY (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 25306919
    180899 4w2f:BY (2.4) BS03 MG ? GO:0003723 ... Q5SHP9 25306919
    180900 4w2f:BZ (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 25306919
    180901 4w2f:BZ (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 25306919
    180902 4w2f:BZ (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 25306919
    180903 4w2f:CB (2.4) BS01 rna ? GO:0003735 ... P80371 25306919
    180904 4w2f:CC (2.4) BS01 rna ? GO:0003676 ... P80372 25306919
    180905 4w2f:CD (2.4) BS01 rna ? GO:0003723 ... P80373 25306919
    180906 4w2f:CD (2.4) BS02 SF4 ? GO:0003723 ... P80373 25306919
    180907 4w2f:CD (2.4) BS03 MG ? GO:0003723 ... P80373 25306919
    180908 4w2f:CE (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    180909 4w2f:CE (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    180910 4w2f:CF (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    180911 4w2f:CF (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    180912 4w2f:CG (2.4) BS01 rna ? GO:0000028 ... P17291 25306919
    180913 4w2f:CG (2.4) BS02 rna ? GO:0000028 ... P17291 25306919
    180914 4w2f:CH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180915 4w2f:CI (2.4) BS01 rna ? GO:0000049 ... P80374 25306919
    180916 4w2f:CI (2.4) BS02 rna ? GO:0000049 ... P80374 25306919
    180917 4w2f:CJ (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    180918 4w2f:CK (2.4) BS01 rna ? GO:0003735 ... P80376 25306919
    180919 4w2f:CK (2.4) BS02 MG ? GO:0003735 ... P80376 25306919
    180920 4w2f:CL (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    180921 4w2f:CL (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    180922 4w2f:CM (2.4) BS01 rna ? GO:0000049 ... P80377 25306919
    180923 4w2f:CM (2.4) BS02 rna ? GO:0000049 ... P80377 25306919
    180924 4w2f:CM (2.4) BS03 rna ? GO:0000049 ... P80377 25306919
    180925 4w2f:CN (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180926 4w2f:CN (2.4) BS02 ZN N/A GO:0003735 ... N/A 25306919
    180927 4w2f:CO (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    180928 4w2f:CO (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    180929 4w2f:CP (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    180930 4w2f:CQ (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180931 4w2f:CQ (2.4) BS02 MG N/A GO:0003735 ... N/A 25306919
    180932 4w2f:CQ (2.4) BS03 MG N/A GO:0003735 ... N/A 25306919
    180933 4w2f:CR (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    180934 4w2f:CR (2.4) BS02 MG ? GO:0003735 ... Q5SLQ0 25306919
    180935 4w2f:CS (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    180936 4w2f:CT (2.4) BS01 rna ? GO:0003723 ... P80380 25306919
    180937 4w2f:CT (2.4) BS02 MG ? GO:0003723 ... P80380 25306919
    180938 4w2f:D0 (2.4) BS01 rna ? GO:0003735 ... P60493 25306919
    180939 4w2f:D0 (2.4) BS02 rna ? GO:0003735 ... P60493 25306919
    180940 4w2f:D1 (2.4) BS01 rna ? GO:0003735 ... P60494 25306919
    180941 4w2f:D1 (2.4) BS02 rna ? GO:0003735 ... P60494 25306919
    180942 4w2f:D1 (2.4) BS03 MG ? GO:0003735 ... P60494 25306919
    180943 4w2f:D2 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    180944 4w2f:D3 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    180945 4w2f:D3 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    180946 4w2f:D3 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    180947 4w2f:D4 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    180948 4w2f:D4 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    180949 4w2f:D5 (2.4) BS01 rna ? GO:0003735 ... P80339 25306919
    180950 4w2f:D5 (2.4) BS02 MG ? GO:0003735 ... P80339 25306919
    180951 4w2f:D5 (2.4) BS03 ZN ? GO:0003735 ... P80339 25306919
    180952 4w2f:D6 (2.4) BS01 rna ? GO:0000049 ... P35871 25306919
    180953 4w2f:D6 (2.4) BS02 ZN ? GO:0000049 ... P35871 25306919
    180954 4w2f:D7 (2.4) BS01 rna ? GO:0003735 ... P80340 25306919
    180955 4w2f:D7 (2.4) BS02 MG ? GO:0003735 ... P80340 25306919
    180956 4w2f:D7 (2.4) BS03 MG ? GO:0003735 ... P80340 25306919
    180957 4w2f:D8 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    180958 4w2f:D9 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 25306919
    180959 4w2f:D9 (2.4) BS02 MG ? GO:0003735 ... Q5SHR2 25306919
    180960 4w2f:D9 (2.4) BS03 ZN ? GO:0003735 ... Q5SHR2 25306919
    180961 4w2f:DD (2.4) BS01 rna ? GO:0002181 ... P60405 25306919
    180962 4w2f:DD (2.4) BS02 rna ? GO:0002181 ... P60405 25306919
    180963 4w2f:DD (2.4) BS03 MG ? GO:0002181 ... P60405 25306919
    180964 4w2f:DD (2.4) BS04 MG ? GO:0002181 ... P60405 25306919
    180965 4w2f:DD (2.4) BS05 MG ? GO:0002181 ... P60405 25306919
    180966 4w2f:DE (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 25306919
    180967 4w2f:DE (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 25306919
    180968 4w2f:DF (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 25306919
    180969 4w2f:DF (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 25306919
    180970 4w2f:DF (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 25306919
    180971 4w2f:DF (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 25306919
    180972 4w2f:DG (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 25306919
    180973 4w2f:DG (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 25306919
    180974 4w2f:DG (2.4) BS03 rna ? GO:0000049 ... Q5SHQ0 25306919
    180975 4w2f:DG (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 25306919
    180976 4w2f:DH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180977 4w2f:DI (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 25306919
    180978 4w2f:DN (2.4) BS01 rna ? GO:0003729 ... P60488 25306919
    180979 4w2f:DO (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 25306919
    180980 4w2f:DO (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 25306919
    180981 4w2f:DP (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 25306919
    180982 4w2f:DQ (2.4) BS01 rna ? GO:0000049 ... P60489 25306919
    180983 4w2f:DQ (2.4) BS02 rna ? GO:0000049 ... P60489 25306919
    180984 4w2f:DQ (2.4) BS03 rna ? GO:0000049 ... P60489 25306919
    180985 4w2f:DQ (2.4) BS04 MG ? GO:0000049 ... P60489 25306919
    180986 4w2f:DQ (2.4) BS05 MG ? GO:0000049 ... P60489 25306919
    180987 4w2f:DQ (2.4) BS06 MG ? GO:0000049 ... P60489 25306919
    180988 4w2f:DR (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 25306919
    180989 4w2f:DS (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 25306919
    180990 4w2f:DS (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 25306919
    180991 4w2f:DT (2.4) BS01 rna ? GO:0003735 ... P60490 25306919
    180992 4w2f:DT (2.4) BS02 rna ? GO:0003735 ... P60490 25306919
    180993 4w2f:DU (2.4) BS01 rna ? GO:0000027 ... P60491 25306919
    180994 4w2f:DU (2.4) BS02 MG ? GO:0000027 ... P60491 25306919
    180995 4w2f:DU (2.4) BS03 MG ? GO:0000027 ... P60491 25306919
    180996 4w2f:DU (2.4) BS04 MG ? GO:0000027 ... P60491 25306919
    180997 4w2f:DV (2.4) BS01 rna ? GO:0003723 ... P60492 25306919
    180998 4w2f:DV (2.4) BS02 MG ? GO:0003723 ... P60492 25306919
    180999 4w2f:DV (2.4) BS03 MG ? GO:0003723 ... P60492 25306919
    181000 4w2f:DV (2.4) BS04 MG ? GO:0003723 ... P60492 25306919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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