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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180601 4w29:CY (3.8) BS03 rna ? GO:0003746 ... Q72I01 25190797
    180602 4w29:CY (3.8) BS04 GDP ? GO:0003746 ... Q72I01 25190797
    180603 4w29:CY (3.8) BS05 FUA ? GO:0003746 ... Q72I01 25190797
    180604 4w29:D0 (3.8) BS01 rna ? GO:0003735 ... P60493 25190797
    180605 4w29:D0 (3.8) BS02 rna ? GO:0003735 ... P60493 25190797
    180606 4w29:D0 (3.8) BS03 rna ? GO:0003735 ... P60493 25190797
    180607 4w29:D1 (3.8) BS01 rna ? GO:0003735 ... P60494 25190797
    180608 4w29:D1 (3.8) BS02 rna ? GO:0003735 ... P60494 25190797
    180609 4w29:D2 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25190797
    180610 4w29:D3 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25190797
    180611 4w29:D3 (3.8) BS02 rna ? GO:0003735 ... Q72I22 25190797
    180612 4w29:D4 (3.8) BS01 rna ? GO:0003735 ... Q72JR0 25190797
    180613 4w29:D5 (3.8) BS01 rna ? GO:0003735 ... P80339 25190797
    180614 4w29:D6 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25190797
    180615 4w29:D7 (3.8) BS01 rna ? GO:0003735 ... P80340 25190797
    180616 4w29:D8 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25190797
    180617 4w29:D9 (3.8) BS01 rna ? GO:0003735 ... Q72I28 25190797
    180618 4w29:DC (3.8) BS01 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    180619 4w29:DC (3.8) BS02 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    180620 4w29:DD (3.8) BS01 rna ? GO:0002181 ... Q72I07 25190797
    180621 4w29:DE (3.8) BS01 rna ? GO:0003735 ... Q72I04 25190797
    180622 4w29:DF (3.8) BS01 rna ? GO:0003735 ... Q5SHN9 25190797
    180623 4w29:DG (3.8) BS01 rna ? GO:0000049 ... P41201 25190797
    180624 4w29:DG (3.8) BS02 rna ? GO:0000049 ... P41201 25190797
    180625 4w29:DH (3.8) BS01 rna ? GO:0002181 ... Q72I19 25190797
    180626 4w29:DK (3.8) BS01 rna ? GO:0003735 ... P62442 25190797
    180627 4w29:DN (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25190797
    180628 4w29:DO (3.8) BS01 rna ? GO:0003735 ... A0A1J1EU54 25190797
    180629 4w29:DO (3.8) BS02 rna ? GO:0003735 ... A0A1J1EU54 25190797
    180630 4w29:DP (3.8) BS01 rna ? GO:0003735 ... Q72I23 25190797
    180631 4w29:DQ (3.8) BS01 rna ? GO:0000049 ... Q72I11 25190797
    180632 4w29:DQ (3.8) BS02 rna ? GO:0000049 ... Q72I11 25190797
    180633 4w29:DR (3.8) BS01 rna ? GO:0003735 ... Q72I33 25190797
    180634 4w29:DS (3.8) BS01 rna ? GO:0003735 ... Q72I20 25190797
    180635 4w29:DS (3.8) BS02 rna ? GO:0003735 ... Q72I20 25190797
    180636 4w29:DT (3.8) BS01 rna ? GO:0003735 ... P60490 25190797
    180637 4w29:DT (3.8) BS02 rna ? GO:0003735 ... P60490 25190797
    180638 4w29:DU (3.8) BS01 rna ? GO:0000027 ... Q72L76 25190797
    180639 4w29:DV (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25190797
    180640 4w29:DW (3.8) BS01 rna ? GO:0003735 ... Q72I09 25190797
    180641 4w29:DX (3.8) BS01 rna ? GO:0000027 ... Q72I06 25190797
    180642 4w29:DY (3.8) BS01 rna ? GO:0003723 ... Q72I15 25190797
    180643 4w29:DZ (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25190797
    180644 4w29:DZ (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25190797
    180645 4w2e:0 (2.9) BS01 rna ? GO:0003735 ... P60493 25104389
    180646 4w2e:0 (2.9) BS02 rna ? GO:0003735 ... P60493 25104389
    180647 4w2e:1 (2.9) BS01 rna ? GO:0003735 ... P60494 25104389
    180648 4w2e:1 (2.9) BS02 rna ? GO:0003735 ... P60494 25104389
    180649 4w2e:1 (2.9) BS03 MG ? GO:0003735 ... P60494 25104389
    180650 4w2e:2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25104389
    180651 4w2e:3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25104389
    180652 4w2e:4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25104389
    180653 4w2e:4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25104389
    180654 4w2e:5 (2.9) BS01 rna ? GO:0003735 ... P80339 25104389
    180655 4w2e:5 (2.9) BS02 ZN ? GO:0003735 ... P80339 25104389
    180656 4w2e:6 (2.9) BS01 rna ? GO:0000049 ... P35871 25104389
    180657 4w2e:6 (2.9) BS02 ZN ? GO:0000049 ... P35871 25104389
    180658 4w2e:7 (2.9) BS01 rna ? GO:0003735 ... P80340 25104389
    180659 4w2e:7 (2.9) BS02 MG ? GO:0003735 ... P80340 25104389
    180660 4w2e:8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25104389
    180661 4w2e:9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25104389
    180662 4w2e:9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25104389
    180663 4w2e:D (2.9) BS01 rna ? GO:0002181 ... P60405 25104389
    180664 4w2e:D (2.9) BS02 rna ? GO:0002181 ... P60405 25104389
    180665 4w2e:D (2.9) BS03 MG ? GO:0002181 ... P60405 25104389
    180666 4w2e:D (2.9) BS04 MG ? GO:0002181 ... P60405 25104389
    180667 4w2e:D (2.9) BS05 MG ? GO:0002181 ... P60405 25104389
    180668 4w2e:E (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25104389
    180669 4w2e:E (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25104389
    180670 4w2e:E (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25104389
    180671 4w2e:F (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25104389
    180672 4w2e:F (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25104389
    180673 4w2e:G (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25104389
    180674 4w2e:G (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25104389
    180675 4w2e:G (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25104389
    180676 4w2e:H (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    180677 4w2e:J (2.9) BS01 rna ? GO:0003735 ... Q8VVE3 25104389
    180678 4w2e:K (2.9) BS01 rna ? GO:0003735 ... Q5SLP6 25104389
    180679 4w2e:N (2.9) BS01 rna ? GO:0003729 ... P60488 25104389
    180680 4w2e:N (2.9) BS02 MG ? GO:0003729 ... P60488 25104389
    180681 4w2e:O (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25104389
    180682 4w2e:O (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25104389
    180683 4w2e:P (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25104389
    180684 4w2e:P (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25104389
    180685 4w2e:Q (2.9) BS01 rna ? GO:0000049 ... P60489 25104389
    180686 4w2e:Q (2.9) BS02 rna ? GO:0000049 ... P60489 25104389
    180687 4w2e:Q (2.9) BS03 MG ? GO:0000049 ... P60489 25104389
    180688 4w2e:Q (2.9) BS04 MG ? GO:0000049 ... P60489 25104389
    180689 4w2e:R (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25104389
    180690 4w2e:R (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25104389
    180691 4w2e:S (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25104389
    180692 4w2e:S (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25104389
    180693 4w2e:T (2.9) BS01 rna ? GO:0003735 ... P60490 25104389
    180694 4w2e:T (2.9) BS02 rna ? GO:0003735 ... P60490 25104389
    180695 4w2e:U (2.9) BS01 rna ? GO:0000027 ... P60491 25104389
    180696 4w2e:U (2.9) BS02 MG ? GO:0000027 ... P60491 25104389
    180697 4w2e:V (2.9) BS01 rna ? GO:0003723 ... P60492 25104389
    180698 4w2e:V (2.9) BS02 MG ? GO:0003723 ... P60492 25104389
    180699 4w2e:W (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25104389
    180700 4w2e:X (2.9) BS01 rna ? GO:0000027 ... Q5SHP0 25104389
    180701 4w2e:Y (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25104389
    180702 4w2e:Y (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25104389
    180703 4w2e:Z (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25104389
    180704 4w2e:Z (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25104389
    180705 4w2e:b (2.9) BS01 rna ? GO:0003735 ... P80371 25104389
    180706 4w2e:c (2.9) BS01 rna ? GO:0003676 ... P80372 25104389
    180707 4w2e:d (2.9) BS01 rna ? GO:0003723 ... P80373 25104389
    180708 4w2e:d (2.9) BS02 SF4 ? GO:0003723 ... P80373 25104389
    180709 4w2e:e (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25104389
    180710 4w2e:f (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25104389
    180711 4w2e:g (2.9) BS01 rna ? GO:0000028 ... P17291 25104389
    180712 4w2e:g (2.9) BS02 rna ? GO:0000028 ... P17291 25104389
    180713 4w2e:h (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    180714 4w2e:i (2.9) BS01 rna ? GO:0000049 ... P80374 25104389
    180715 4w2e:j (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25104389
    180716 4w2e:k (2.9) BS01 rna ? GO:0003735 ... P80376 25104389
    180717 4w2e:k (2.9) BS02 MG ? GO:0003735 ... P80376 25104389
    180718 4w2e:l (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25104389
    180719 4w2e:l (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25104389
    180720 4w2e:m (2.9) BS01 rna ? GO:0000049 ... P80377 25104389
    180721 4w2e:m (2.9) BS02 rna ? GO:0000049 ... P80377 25104389
    180722 4w2e:m (2.9) BS03 MG ? GO:0000049 ... P80377 25104389
    180723 4w2e:n (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    180724 4w2e:n (2.9) BS02 ZN N/A GO:0003735 ... N/A 25104389
    180725 4w2e:o (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25104389
    180726 4w2e:o (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25104389
    180727 4w2e:p (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25104389
    180728 4w2e:q (2.9) BS01 rna N/A GO:0003735 ... N/A 25104389
    180729 4w2e:r (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25104389
    180730 4w2e:s (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25104389
    180731 4w2e:t (2.9) BS01 rna ? GO:0003723 ... P80380 25104389
    180732 4w2e:y (2.9) BS01 rna ?
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 25104389
    180733 4w2e:y (2.9) BS02 rna ?
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 25104389
    180734 4w2e:y (2.9) BS03 MG ?
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 25104389
    180735 4w2e:y (2.9) BS04 GDP ?
    3.6.5.n1    		 GO:0003735 ... Q5SKA7
    Q5SLQ1    		 25104389
    180736 4w2f:AB (2.4) BS01 rna ? GO:0003735 ... P80371 25306919
    180737 4w2f:AB (2.4) BS02 MG ? GO:0003735 ... P80371 25306919
    180738 4w2f:AC (2.4) BS01 rna ? GO:0003676 ... P80372 25306919
    180739 4w2f:AD (2.4) BS01 rna ? GO:0003723 ... P80373 25306919
    180740 4w2f:AD (2.4) BS02 SF4 ? GO:0003723 ... P80373 25306919
    180741 4w2f:AE (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 25306919
    180742 4w2f:AE (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 25306919
    180743 4w2f:AE (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 25306919
    180744 4w2f:AF (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 25306919
    180745 4w2f:AF (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 25306919
    180746 4w2f:AG (2.4) BS01 rna ? GO:0000028 ... P17291 25306919
    180747 4w2f:AG (2.4) BS02 rna ? GO:0000028 ... P17291 25306919
    180748 4w2f:AH (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180749 4w2f:AI (2.4) BS01 rna ? GO:0000049 ... P80374 25306919
    180750 4w2f:AJ (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 25306919
    180751 4w2f:AK (2.4) BS01 rna ? GO:0003735 ... P80376 25306919
    180752 4w2f:AK (2.4) BS02 MG ? GO:0003735 ... P80376 25306919
    180753 4w2f:AL (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 25306919
    180754 4w2f:AL (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 25306919
    180755 4w2f:AM (2.4) BS01 rna ? GO:0000049 ... P80377 25306919
    180756 4w2f:AM (2.4) BS02 rna ? GO:0000049 ... P80377 25306919
    180757 4w2f:AM (2.4) BS03 rna ? GO:0000049 ... P80377 25306919
    180758 4w2f:AM (2.4) BS04 rna ? GO:0000049 ... P80377 25306919
    180759 4w2f:AM (2.4) BS05 MG ? GO:0000049 ... P80377 25306919
    180760 4w2f:AN (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180761 4w2f:AN (2.4) BS02 ZN N/A GO:0003735 ... N/A 25306919
    180762 4w2f:AO (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 25306919
    180763 4w2f:AO (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 25306919
    180764 4w2f:AP (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 25306919
    180765 4w2f:AQ (2.4) BS01 rna N/A GO:0003735 ... N/A 25306919
    180766 4w2f:AR (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 25306919
    180767 4w2f:AS (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 25306919
    180768 4w2f:AT (2.4) BS01 rna ? GO:0003723 ... P80380 25306919
    180769 4w2f:B0 (2.4) BS01 rna ? GO:0003735 ... P60493 25306919
    180770 4w2f:B0 (2.4) BS02 rna ? GO:0003735 ... P60493 25306919
    180771 4w2f:B0 (2.4) BS03 rna ? GO:0003735 ... P60493 25306919
    180772 4w2f:B0 (2.4) BS04 MG ? GO:0003735 ... P60493 25306919
    180773 4w2f:B0 (2.4) BS05 MG ? GO:0003735 ... P60493 25306919
    180774 4w2f:B1 (2.4) BS01 rna ? GO:0003735 ... P60494 25306919
    180775 4w2f:B1 (2.4) BS02 rna ? GO:0003735 ... P60494 25306919
    180776 4w2f:B1 (2.4) BS03 MG ? GO:0003735 ... P60494 25306919
    180777 4w2f:B2 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 25306919
    180778 4w2f:B2 (2.4) BS02 MG ? GO:0003735 ... Q5SHP6 25306919
    180779 4w2f:B2 (2.4) BS03 MG ? GO:0003735 ... Q5SHP6 25306919
    180780 4w2f:B3 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 25306919
    180781 4w2f:B3 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 25306919
    180782 4w2f:B3 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 25306919
    180783 4w2f:B3 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 25306919
    180784 4w2f:B3 (2.4) BS05 MG ? GO:0003735 ... Q5SHQ6 25306919
    180785 4w2f:B4 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 25306919
    180786 4w2f:B4 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 25306919
    180787 4w2f:B5 (2.4) BS01 rna ? GO:0003735 ... P80339 25306919
    180788 4w2f:B5 (2.4) BS02 ZN ? GO:0003735 ... P80339 25306919
    180789 4w2f:B5 (2.4) BS03 MG ? GO:0003735 ... P80339 25306919
    180790 4w2f:B6 (2.4) BS01 rna ? GO:0000049 ... P35871 25306919
    180791 4w2f:B6 (2.4) BS02 MG ? GO:0000049 ... P35871 25306919
    180792 4w2f:B6 (2.4) BS03 ZN ? GO:0000049 ... P35871 25306919
    180793 4w2f:B6 (2.4) BS04 MG ? GO:0000049 ... P35871 25306919
    180794 4w2f:B7 (2.4) BS01 rna ? GO:0003735 ... P80340 25306919
    180795 4w2f:B7 (2.4) BS02 MG ? GO:0003735 ... P80340 25306919
    180796 4w2f:B7 (2.4) BS03 MG ? GO:0003735 ... P80340 25306919
    180797 4w2f:B7 (2.4) BS04 MG ? GO:0003735 ... P80340 25306919
    180798 4w2f:B8 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 25306919
    180799 4w2f:B8 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 25306919
    180800 4w2f:B8 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 25306919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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