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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180401 4v9s:CI (3.1) BS01 rna ? GO:0000049 ... P80374 24412368
    180402 4v9s:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    180403 4v9s:CK (3.1) BS01 rna ? GO:0003735 ... P80376 24412368
    180404 4v9s:CK (3.1) BS02 MG ? GO:0003735 ... P80376 24412368
    180405 4v9s:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    180406 4v9s:CL (3.1) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    180407 4v9s:CM (3.1) BS01 rna ? GO:0000049 ... P80377 24412368
    180408 4v9s:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180409 4v9s:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 24412368
    180410 4v9s:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    180411 4v9s:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    180412 4v9s:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    180413 4v9s:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180414 4v9s:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    180415 4v9s:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    180416 4v9s:CT (3.1) BS01 rna ? GO:0003723 ... P80380 24412368
    180417 4v9s:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 24412368
    180418 4v9s:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 24412368
    180419 4v9s:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 24412368
    180420 4v9s:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    180421 4v9s:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    180422 4v9s:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    180423 4v9s:D3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    180424 4v9s:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    180425 4v9s:D4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    180426 4v9s:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 24412368
    180427 4v9s:D5 (3.1) BS02 MG ? GO:0003735 ... P80339 24412368
    180428 4v9s:D5 (3.1) BS03 ZN ? GO:0003735 ... P80339 24412368
    180429 4v9s:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 24412368
    180430 4v9s:D6 (3.1) BS02 ZN ? GO:0000049 ... P35871 24412368
    180431 4v9s:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 24412368
    180432 4v9s:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    180433 4v9s:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 24412368
    180434 4v9s:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 24412368
    180435 4v9s:DD (3.1) BS01 rna ? GO:0002181 ... P60405 24412368
    180436 4v9s:DD (3.1) BS02 rna ? GO:0002181 ... P60405 24412368
    180437 4v9s:DD (3.1) BS03 MG ? GO:0002181 ... P60405 24412368
    180438 4v9s:DD (3.1) BS04 MG ? GO:0002181 ... P60405 24412368
    180439 4v9s:DD (3.1) BS05 MG ? GO:0002181 ... P60405 24412368
    180440 4v9s:DD (3.1) BS06 MG ? GO:0002181 ... P60405 24412368
    180441 4v9s:DD (3.1) BS07 MG ? GO:0002181 ... P60405 24412368
    180442 4v9s:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    180443 4v9s:DE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    180444 4v9s:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    180445 4v9s:DF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    180446 4v9s:DF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    180447 4v9s:DF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    180448 4v9s:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    180449 4v9s:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    180450 4v9s:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    180451 4v9s:DG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 24412368
    180452 4v9s:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180453 4v9s:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    180454 4v9s:DN (3.1) BS01 rna ? GO:0003729 ... P60488 24412368
    180455 4v9s:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    180456 4v9s:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    180457 4v9s:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    180458 4v9s:DP (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    180459 4v9s:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 24412368
    180460 4v9s:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 24412368
    180461 4v9s:DQ (3.1) BS03 MG ? GO:0000049 ... P60489 24412368
    180462 4v9s:DQ (3.1) BS04 MG ? GO:0000049 ... P60489 24412368
    180463 4v9s:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    180464 4v9s:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 24412368
    180465 4v9s:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 24412368
    180466 4v9s:DT (3.1) BS01 rna ? GO:0003735 ... P60490 24412368
    180467 4v9s:DT (3.1) BS02 rna ? GO:0003735 ... P60490 24412368
    180468 4v9s:DU (3.1) BS01 rna ? GO:0000027 ... P60491 24412368
    180469 4v9s:DU (3.1) BS02 MG ? GO:0000027 ... P60491 24412368
    180470 4v9s:DU (3.1) BS03 MG ? GO:0000027 ... P60491 24412368
    180471 4v9s:DV (3.1) BS01 rna ? GO:0003723 ... P60492 24412368
    180472 4v9s:DV (3.1) BS02 MG ? GO:0003723 ... P60492 24412368
    180473 4v9s:DV (3.1) BS03 MG ? GO:0003723 ... P60492 24412368
    180474 4v9s:DV (3.1) BS04 MG ? GO:0003723 ... P60492 24412368
    180475 4v9s:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    180476 4v9s:DW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    180477 4v9s:DW (3.1) BS03 MG ? GO:0003735 ... Q5SHP3 24412368
    180478 4v9s:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 24412368
    180479 4v9s:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 24412368
    180480 4v9s:DY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 24412368
    180481 4v9s:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    180482 4v9s:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    180483 4w1v:A (2.24) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180484 4w1v:A (2.24) BS02 3GS 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.659uM
    180485 4w1v:A (2.24) BS03 3GS 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.659uM
    180486 4w1v:B (2.24) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180487 4w1v:B (2.24) BS02 3GS 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.659uM
    180488 4w1v:B (2.24) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180489 4w1v:B (2.24) BS04 3GS 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.659uM
    180490 4w1w:A (1.9) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180491 4w1w:A (1.9) BS02 3G8 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.195uM
    180492 4w1w:A (1.9) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180493 4w1w:A (1.9) BS04 3G8 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.195uM
    180494 4w1w:B (1.9) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180495 4w1w:B (1.9) BS02 3G8 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.195uM
    180496 4w1w:B (1.9) BS03 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180497 4w1w:B (1.9) BS04 3G8 2.6.1.62 GO:0004015 ... P9WQ80 25556942 MOAD: ic50=0.195uM
    180498 4w1x:A (1.8) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180499 4w1x:A (1.8) BS02 3G9 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180500 4w1x:A (1.8) BS03 3G9 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180501 4w1x:A (1.8) BS04 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180502 4w1x:B (1.8) BS01 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180503 4w1x:B (1.8) BS02 3G9 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180504 4w1x:B (1.8) BS03 3G9 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180505 4w1x:B (1.8) BS04 PLP 2.6.1.62 GO:0004015 ... P9WQ80 25556942
    180506 4w1y:B (3.2) BS01 SO4 4.1.99.1 GO:0003824 ... P0A853 25760702
    180507 4w29:AB (3.8) BS01 rna ? GO:0003735 ... P62662 25190797
    180508 4w29:AD (3.8) BS01 rna ? GO:0003723 ... P62664 25190797
    180509 4w29:AE (3.8) BS01 rna ? GO:0003723 ... P62665 25190797
    180510 4w29:AF (3.8) BS01 rna ? GO:0003735 ... P62666 25190797
    180511 4w29:AG (3.8) BS01 rna ? GO:0000028 ... P62667 25190797
    180512 4w29:AH (3.8) BS01 rna ? GO:0003735 ... P62668 25190797
    180513 4w29:AI (3.8) BS01 rna ? GO:0000049 ... P80374 25190797
    180514 4w29:AI (3.8) BS02 rna ? GO:0000049 ... P80374 25190797
    180515 4w29:AJ (3.8) BS01 rna ? GO:0000049 ... P62653 25190797
    180516 4w29:AK (3.8) BS01 rna ? GO:0003735 ... P62654 25190797
    180517 4w29:AK (3.8) BS02 rna ? GO:0003735 ... P62654 25190797
    180518 4w29:AL (3.8) BS01 rna ? GO:0000049 ... P61941 25190797
    180519 4w29:AM (3.8) BS01 rna ? GO:0000049 ... P62655 25190797
    180520 4w29:AM (3.8) BS02 rna ? GO:0000049 ... P62655 25190797
    180521 4w29:AM (3.8) BS03 rna ? GO:0000049 ... P62655 25190797
    180522 4w29:AN (3.8) BS01 rna ? GO:0003735 ... P62656 25190797
    180523 4w29:AO (3.8) BS01 rna ? GO:0003735 ... P62657 25190797
    180524 4w29:AO (3.8) BS02 rna ? GO:0003735 ... P62657 25190797
    180525 4w29:AP (3.8) BS01 rna ? GO:0003735 ... P62238 25190797
    180526 4w29:AQ (3.8) BS01 rna ? GO:0003735 ... P0DOY7 25190797
    180527 4w29:AR (3.8) BS01 rna ? GO:0003735 ... P62659 25190797
    180528 4w29:AS (3.8) BS01 rna ? GO:0003723 ... P62660 25190797
    180529 4w29:AT (3.8) BS01 rna ? GO:0003723 ... P80380 25190797
    180530 4w29:AY (3.8) BS01 rna ? GO:0003746 ... Q72I01 25190797
    180531 4w29:AY (3.8) BS02 rna ? GO:0003746 ... Q72I01 25190797
    180532 4w29:AY (3.8) BS03 rna ? GO:0003746 ... Q72I01 25190797
    180533 4w29:AY (3.8) BS04 GDP ? GO:0003746 ... Q72I01 25190797
    180534 4w29:AY (3.8) BS05 FUA ? GO:0003746 ... Q72I01 25190797
    180535 4w29:B0 (3.8) BS01 rna ? GO:0003735 ... P60493 25190797
    180536 4w29:B0 (3.8) BS02 rna ? GO:0003735 ... P60493 25190797
    180537 4w29:B0 (3.8) BS03 rna ? GO:0003735 ... P60493 25190797
    180538 4w29:B1 (3.8) BS01 rna ? GO:0003735 ... P60494 25190797
    180539 4w29:B1 (3.8) BS02 rna ? GO:0003735 ... P60494 25190797
    180540 4w29:B2 (3.8) BS01 rna ? GO:0003735 ... Q72I12 25190797
    180541 4w29:B3 (3.8) BS01 rna ? GO:0003735 ... Q72I22 25190797
    180542 4w29:B4 (3.8) BS01 rna ? GO:0003735 ... Q72JR0 25190797
    180543 4w29:B5 (3.8) BS01 rna ? GO:0003735 ... P80339 25190797
    180544 4w29:B6 (3.8) BS01 rna ? GO:0003735 ... Q72GW3 25190797
    180545 4w29:B7 (3.8) BS01 rna ? GO:0003735 ... P80340 25190797
    180546 4w29:B8 (3.8) BS01 rna ? GO:0003735 ... Q72L77 25190797
    180547 4w29:B9 (3.8) BS01 rna ? GO:0003735 ... Q72I28 25190797
    180548 4w29:BC (3.8) BS01 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    180549 4w29:BC (3.8) BS02 rna ? GO:0000049 ... A0A1J1EJ43 25190797
    180550 4w29:BD (3.8) BS01 rna ? GO:0002181 ... Q72I07 25190797
    180551 4w29:BE (3.8) BS01 rna ? GO:0003735 ... Q72I04 25190797
    180552 4w29:BF (3.8) BS01 rna ? GO:0003735 ... Q5SHN9 25190797
    180553 4w29:BG (3.8) BS01 rna ? GO:0000049 ... P41201 25190797
    180554 4w29:BG (3.8) BS02 rna ? GO:0000049 ... P41201 25190797
    180555 4w29:BH (3.8) BS01 rna ? GO:0002181 ... Q72I19 25190797
    180556 4w29:BK (3.8) BS01 rna ? GO:0003735 ... P62442 25190797
    180557 4w29:BN (3.8) BS01 rna ? GO:0003729 ... Q72IN1 25190797
    180558 4w29:BO (3.8) BS01 rna ? GO:0003735 ... A0A1J1EU54 25190797
    180559 4w29:BO (3.8) BS02 rna ? GO:0003735 ... A0A1J1EU54 25190797
    180560 4w29:BP (3.8) BS01 rna ? GO:0003735 ... Q72I23 25190797
    180561 4w29:BQ (3.8) BS01 rna ? GO:0000049 ... Q72I11 25190797
    180562 4w29:BQ (3.8) BS02 rna ? GO:0000049 ... Q72I11 25190797
    180563 4w29:BQ (3.8) BS03 rna ? GO:0000049 ... Q72I11 25190797
    180564 4w29:BR (3.8) BS01 rna ? GO:0003735 ... Q72I33 25190797
    180565 4w29:BS (3.8) BS01 rna ? GO:0003735 ... Q72I20 25190797
    180566 4w29:BS (3.8) BS02 rna ? GO:0003735 ... Q72I20 25190797
    180567 4w29:BT (3.8) BS01 rna ? GO:0003735 ... P60490 25190797
    180568 4w29:BT (3.8) BS02 rna ? GO:0003735 ... P60490 25190797
    180569 4w29:BU (3.8) BS01 rna ? GO:0000027 ... Q72L76 25190797
    180570 4w29:BV (3.8) BS01 rna ? GO:0003723 ... Q72HR2 25190797
    180571 4w29:BW (3.8) BS01 rna ? GO:0003735 ... Q72I09 25190797
    180572 4w29:BX (3.8) BS01 rna ? GO:0000027 ... Q72I06 25190797
    180573 4w29:BY (3.8) BS01 rna ? GO:0003723 ... Q72I15 25190797
    180574 4w29:BZ (3.8) BS01 rna ? GO:0003723 ... Q72IA7 25190797
    180575 4w29:BZ (3.8) BS02 rna ? GO:0003723 ... Q72IA7 25190797
    180576 4w29:CB (3.8) BS01 rna ? GO:0003735 ... P62662 25190797
    180577 4w29:CD (3.8) BS01 rna ? GO:0003723 ... P62664 25190797
    180578 4w29:CD (3.8) BS02 rna ? GO:0003723 ... P62664 25190797
    180579 4w29:CE (3.8) BS01 rna ? GO:0003723 ... P62665 25190797
    180580 4w29:CF (3.8) BS01 rna ? GO:0003735 ... P62666 25190797
    180581 4w29:CG (3.8) BS01 rna ? GO:0000028 ... P62667 25190797
    180582 4w29:CH (3.8) BS01 rna ? GO:0003735 ... P62668 25190797
    180583 4w29:CI (3.8) BS01 rna ? GO:0000049 ... P80374 25190797
    180584 4w29:CI (3.8) BS02 rna ? GO:0000049 ... P80374 25190797
    180585 4w29:CJ (3.8) BS01 rna ? GO:0000049 ... P62653 25190797
    180586 4w29:CK (3.8) BS01 rna ? GO:0003735 ... P62654 25190797
    180587 4w29:CL (3.8) BS01 rna ? GO:0000049 ... P61941 25190797
    180588 4w29:CM (3.8) BS01 rna ? GO:0000049 ... P62655 25190797
    180589 4w29:CM (3.8) BS02 rna ? GO:0000049 ... P62655 25190797
    180590 4w29:CM (3.8) BS03 rna ? GO:0000049 ... P62655 25190797
    180591 4w29:CN (3.8) BS01 rna ? GO:0003735 ... P62656 25190797
    180592 4w29:CO (3.8) BS01 rna ? GO:0003735 ... P62657 25190797
    180593 4w29:CO (3.8) BS02 rna ? GO:0003735 ... P62657 25190797
    180594 4w29:CP (3.8) BS01 rna ? GO:0003735 ... P62238 25190797
    180595 4w29:CQ (3.8) BS01 rna ? GO:0003735 ... P0DOY7 25190797
    180596 4w29:CR (3.8) BS01 rna ? GO:0003735 ... P62659 25190797
    180597 4w29:CS (3.8) BS01 rna ? GO:0003723 ... P62660 25190797
    180598 4w29:CT (3.8) BS01 rna ? GO:0003723 ... P80380 25190797
    180599 4w29:CY (3.8) BS01 rna ? GO:0003746 ... Q72I01 25190797
    180600 4w29:CY (3.8) BS02 rna ? GO:0003746 ... Q72I01 25190797
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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