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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180201 4v9r:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    180202 4v9r:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180203 4v9r:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    180204 4v9r:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    180205 4v9r:CT (3.0) BS01 rna ? GO:0003723 ... P80380 24412368
    180206 4v9r:CT (3.0) BS02 MG ? GO:0003723 ... P80380 24412368
    180207 4v9r:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 24412368
    180208 4v9r:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 24412368
    180209 4v9r:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 24412368
    180210 4v9r:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    180211 4v9r:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    180212 4v9r:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    180213 4v9r:D3 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    180214 4v9r:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    180215 4v9r:D4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    180216 4v9r:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 24412368
    180217 4v9r:D5 (3.0) BS02 ZN ? GO:0003735 ... P80339 24412368
    180218 4v9r:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 24412368
    180219 4v9r:D6 (3.0) BS02 ZN ? GO:0000049 ... P35871 24412368
    180220 4v9r:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 24412368
    180221 4v9r:D7 (3.0) BS02 MG ? GO:0003735 ... P80340 24412368
    180222 4v9r:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    180223 4v9r:D9 (3.0) BS01 rna ? GO:0003735 ... P80256 24412368
    180224 4v9r:D9 (3.0) BS02 ZN ? GO:0003735 ... P80256 24412368
    180225 4v9r:DD (3.0) BS01 rna ? GO:0002181 ... P60405 24412368
    180226 4v9r:DD (3.0) BS02 rna ? GO:0002181 ... P60405 24412368
    180227 4v9r:DD (3.0) BS03 MG ? GO:0002181 ... P60405 24412368
    180228 4v9r:DD (3.0) BS04 MG ? GO:0002181 ... P60405 24412368
    180229 4v9r:DD (3.0) BS05 MG ? GO:0002181 ... P60405 24412368
    180230 4v9r:DD (3.0) BS06 MG ? GO:0002181 ... P60405 24412368
    180231 4v9r:DD (3.0) BS07 MG ? GO:0002181 ... P60405 24412368
    180232 4v9r:DD (3.0) BS08 MG ? GO:0002181 ... P60405 24412368
    180233 4v9r:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    180234 4v9r:DE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    180235 4v9r:DE (3.0) BS03 MG ? GO:0003735 ... Q5SHN8 24412368
    180236 4v9r:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    180237 4v9r:DF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    180238 4v9r:DF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    180239 4v9r:DF (3.0) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    180240 4v9r:DF (3.0) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    180241 4v9r:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    180242 4v9r:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    180243 4v9r:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    180244 4v9r:DG (3.0) BS04 MG ? GO:0000049 ... Q5SHQ0 24412368
    180245 4v9r:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180246 4v9r:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    180247 4v9r:DN (3.0) BS01 rna ? GO:0003729 ... P60488 24412368
    180248 4v9r:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    180249 4v9r:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    180250 4v9r:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    180251 4v9r:DP (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    180252 4v9r:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 24412368
    180253 4v9r:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 24412368
    180254 4v9r:DQ (3.0) BS03 MG ? GO:0000049 ... P60489 24412368
    180255 4v9r:DQ (3.0) BS04 MG ? GO:0000049 ... P60489 24412368
    180256 4v9r:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    180257 4v9r:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 24412368
    180258 4v9r:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 24412368
    180259 4v9r:DT (3.0) BS01 rna ? GO:0003735 ... P60490 24412368
    180260 4v9r:DT (3.0) BS02 rna ? GO:0003735 ... P60490 24412368
    180261 4v9r:DU (3.0) BS01 rna ? GO:0000027 ... P60491 24412368
    180262 4v9r:DU (3.0) BS02 MG ? GO:0000027 ... P60491 24412368
    180263 4v9r:DU (3.0) BS03 MG ? GO:0000027 ... P60491 24412368
    180264 4v9r:DV (3.0) BS01 rna ? GO:0003723 ... P60492 24412368
    180265 4v9r:DV (3.0) BS02 MG ? GO:0003723 ... P60492 24412368
    180266 4v9r:DV (3.0) BS03 MG ? GO:0003723 ... P60492 24412368
    180267 4v9r:DV (3.0) BS04 MG ? GO:0003723 ... P60492 24412368
    180268 4v9r:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    180269 4v9r:DW (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    180270 4v9r:DW (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 24412368
    180271 4v9r:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 24412368
    180272 4v9r:DY (3.0) BS01 rna ? GO:0003723 ... Q56435 24412368
    180273 4v9r:DY (3.0) BS02 ZN ? GO:0003723 ... Q56435 24412368
    180274 4v9r:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    180275 4v9r:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    180276 4v9s:AB (3.1) BS01 rna ? GO:0003735 ... P80371 24412368
    180277 4v9s:AC (3.1) BS01 rna ? GO:0003676 ... P80372 24412368
    180278 4v9s:AD (3.1) BS01 rna ? GO:0003723 ... P80373 24412368
    180279 4v9s:AD (3.1) BS02 SF4 ? GO:0003723 ... P80373 24412368
    180280 4v9s:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    180281 4v9s:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    180282 4v9s:AG (3.1) BS01 rna ? GO:0000028 ... P17291 24412368
    180283 4v9s:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180284 4v9s:AI (3.1) BS01 rna ? GO:0000049 ... P80374 24412368
    180285 4v9s:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    180286 4v9s:AK (3.1) BS01 rna ? GO:0003735 ... P80376 24412368
    180287 4v9s:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    180288 4v9s:AL (3.1) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    180289 4v9s:AL (3.1) BS03 MG ? GO:0000049 ... Q5SHN3 24412368
    180290 4v9s:AM (3.1) BS01 rna ? GO:0000049 ... P80377 24412368
    180291 4v9s:AM (3.1) BS02 rna ? GO:0000049 ... P80377 24412368
    180292 4v9s:AM (3.1) BS03 MG ? GO:0000049 ... P80377 24412368
    180293 4v9s:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180294 4v9s:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 24412368
    180295 4v9s:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    180296 4v9s:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    180297 4v9s:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    180298 4v9s:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180299 4v9s:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    180300 4v9s:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    180301 4v9s:AT (3.1) BS01 rna ? GO:0003723 ... P80380 24412368
    180302 4v9s:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 24412368
    180303 4v9s:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 24412368
    180304 4v9s:B0 (3.1) BS03 MG ? GO:0003735 ... P60493 24412368
    180305 4v9s:B0 (3.1) BS04 MG ? GO:0003735 ... P60493 24412368
    180306 4v9s:B0 (3.1) BS05 MG ? GO:0003735 ... P60493 24412368
    180307 4v9s:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 24412368
    180308 4v9s:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    180309 4v9s:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    180310 4v9s:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    180311 4v9s:B3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    180312 4v9s:B4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    180313 4v9s:B4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    180314 4v9s:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 24412368
    180315 4v9s:B5 (3.1) BS02 ZN ? GO:0003735 ... P80339 24412368
    180316 4v9s:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 24412368
    180317 4v9s:B6 (3.1) BS02 ZN ? GO:0000049 ... P35871 24412368
    180318 4v9s:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 24412368
    180319 4v9s:B7 (3.1) BS02 MG ? GO:0003735 ... P80340 24412368
    180320 4v9s:B7 (3.1) BS03 MG ? GO:0003735 ... P80340 24412368
    180321 4v9s:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    180322 4v9s:B8 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 24412368
    180323 4v9s:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 24412368
    180324 4v9s:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 24412368
    180325 4v9s:BD (3.1) BS01 rna ? GO:0002181 ... P60405 24412368
    180326 4v9s:BD (3.1) BS02 rna ? GO:0002181 ... P60405 24412368
    180327 4v9s:BD (3.1) BS03 MG ? GO:0002181 ... P60405 24412368
    180328 4v9s:BD (3.1) BS04 MG ? GO:0002181 ... P60405 24412368
    180329 4v9s:BD (3.1) BS05 MG ? GO:0002181 ... P60405 24412368
    180330 4v9s:BD (3.1) BS06 MG ? GO:0002181 ... P60405 24412368
    180331 4v9s:BD (3.1) BS07 MG ? GO:0002181 ... P60405 24412368
    180332 4v9s:BD (3.1) BS08 MG ? GO:0002181 ... P60405 24412368
    180333 4v9s:BD (3.1) BS09 MG ? GO:0002181 ... P60405 24412368
    180334 4v9s:BD (3.1) BS10 MG ? GO:0002181 ... P60405 24412368
    180335 4v9s:BD (3.1) BS11 MG ? GO:0002181 ... P60405 24412368
    180336 4v9s:BD (3.1) BS12 MG ? GO:0002181 ... P60405 24412368
    180337 4v9s:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    180338 4v9s:BE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    180339 4v9s:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    180340 4v9s:BF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    180341 4v9s:BF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    180342 4v9s:BF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    180343 4v9s:BF (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    180344 4v9s:BF (3.1) BS06 MG ? GO:0003735 ... Q5SHN9 24412368
    180345 4v9s:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    180346 4v9s:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    180347 4v9s:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    180348 4v9s:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    180349 4v9s:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    180350 4v9s:BN (3.1) BS01 rna ? GO:0003729 ... P60488 24412368
    180351 4v9s:BN (3.1) BS02 MG ? GO:0003729 ... P60488 24412368
    180352 4v9s:BN (3.1) BS03 MG ? GO:0003729 ... P60488 24412368
    180353 4v9s:BN (3.1) BS04 MG ? GO:0003729 ... P60488 24412368
    180354 4v9s:BN (3.1) BS05 MG ? GO:0003729 ... P60488 24412368
    180355 4v9s:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    180356 4v9s:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    180357 4v9s:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    180358 4v9s:BP (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    180359 4v9s:BP (3.1) BS03 MG ? GO:0003735 ... Q5SHQ7 24412368
    180360 4v9s:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 24412368
    180361 4v9s:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 24412368
    180362 4v9s:BQ (3.1) BS03 MG ? GO:0000049 ... P60489 24412368
    180363 4v9s:BQ (3.1) BS04 MG ? GO:0000049 ... P60489 24412368
    180364 4v9s:BQ (3.1) BS05 MG ? GO:0000049 ... P60489 24412368
    180365 4v9s:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    180366 4v9s:BR (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 24412368
    180367 4v9s:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 24412368
    180368 4v9s:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 24412368
    180369 4v9s:BT (3.1) BS01 rna ? GO:0003735 ... P60490 24412368
    180370 4v9s:BT (3.1) BS02 rna ? GO:0003735 ... P60490 24412368
    180371 4v9s:BU (3.1) BS01 rna ? GO:0000027 ... P60491 24412368
    180372 4v9s:BU (3.1) BS02 MG ? GO:0000027 ... P60491 24412368
    180373 4v9s:BU (3.1) BS03 MG ? GO:0000027 ... P60491 24412368
    180374 4v9s:BU (3.1) BS04 MG ? GO:0000027 ... P60491 24412368
    180375 4v9s:BU (3.1) BS05 MG ? GO:0000027 ... P60491 24412368
    180376 4v9s:BU (3.1) BS06 MG ? GO:0000027 ... P60491 24412368
    180377 4v9s:BV (3.1) BS01 rna ? GO:0003723 ... P60492 24412368
    180378 4v9s:BV (3.1) BS02 MG ? GO:0003723 ... P60492 24412368
    180379 4v9s:BV (3.1) BS03 MG ? GO:0003723 ... P60492 24412368
    180380 4v9s:BV (3.1) BS04 MG ? GO:0003723 ... P60492 24412368
    180381 4v9s:BV (3.1) BS05 MG ? GO:0003723 ... P60492 24412368
    180382 4v9s:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    180383 4v9s:BW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    180384 4v9s:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 24412368
    180385 4v9s:BX (3.1) BS02 MG ? GO:0000027 ... Q5SHP0 24412368
    180386 4v9s:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 24412368
    180387 4v9s:BY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 24412368
    180388 4v9s:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    180389 4v9s:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    180390 4v9s:CB (3.1) BS01 rna ? GO:0003735 ... P80371 24412368
    180391 4v9s:CC (3.1) BS01 rna ? GO:0003676 ... P80372 24412368
    180392 4v9s:CD (3.1) BS01 rna ? GO:0003723 ... P80373 24412368
    180393 4v9s:CD (3.1) BS02 SF4 ? GO:0003723 ... P80373 24412368
    180394 4v9s:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    180395 4v9s:CE (3.1) BS02 MG ? GO:0003723 ... Q5SHQ5 24412368
    180396 4v9s:CE (3.1) BS03 MG ? GO:0003723 ... Q5SHQ5 24412368
    180397 4v9s:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    180398 4v9s:CF (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 24412368
    180399 4v9s:CG (3.1) BS01 rna ? GO:0000028 ... P17291 24412368
    180400 4v9s:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 24412368
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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