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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180001 4v9q:CN (3.4) BS03 MG ? GO:0003735 ... Q72I33 23824292
    180002 4v9q:CN (3.4) BS04 MG ? GO:0003735 ... Q72I33 23824292
    180003 4v9q:CO (3.4) BS01 rna ? GO:0003735 ... Q72I20 23824292
    180004 4v9q:CO (3.4) BS02 rna ? GO:0003735 ... Q72I20 23824292
    180005 4v9q:CP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 23824292
    180006 4v9q:CP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 23824292
    180007 4v9q:CQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 23824292
    180008 4v9q:CQ (3.4) BS02 MG ? GO:0000027 ... Q72L76 23824292
    180009 4v9q:CQ (3.4) BS03 MG ? GO:0000027 ... Q72L76 23824292
    180010 4v9q:CQ (3.4) BS04 MG ? GO:0000027 ... Q72L76 23824292
    180011 4v9q:CQ (3.4) BS05 MG ? GO:0000027 ... Q72L76 23824292
    180012 4v9q:CR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 23824292
    180013 4v9q:CS (3.4) BS01 rna ? GO:0003735 ... Q72I09 23824292
    180014 4v9q:CS (3.4) BS02 MG ? GO:0003735 ... Q72I09 23824292
    180015 4v9q:CT (3.4) BS01 rna ? GO:0000027 ... Q72I06 23824292
    180016 4v9q:CU (3.4) BS01 rna ? GO:0003723 ... Q72I15 23824292
    180017 4v9q:CV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 23824292
    180018 4v9q:CV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 23824292
    180019 4v9q:CW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 23824292
    180020 4v9q:CW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 23824292
    180021 4v9q:CW (3.4) BS03 MG ? GO:0003735 ... Q72HR3 23824292
    180022 4v9q:CX (3.4) BS01 rna ? GO:0005840 ... Q72G84 23824292
    180023 4v9q:CY (3.4) BS01 rna ? GO:0003735 ... Q72I12 23824292
    180024 4v9q:CY (3.4) BS02 MG ? GO:0003735 ... Q72I12 23824292
    180025 4v9q:CY (3.4) BS03 MG ? GO:0003735 ... Q72I12 23824292
    180026 4v9q:CZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 23824292
    180027 4v9q:CZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 23824292
    180028 4v9q:DB (3.4) BS01 rna ? GO:0003735 ... P62662 23824292
    180029 4v9q:DD (3.4) BS01 rna ? GO:0003723 ... P62664 23824292
    180030 4v9q:DD (3.4) BS02 MG ? GO:0003723 ... P62664 23824292
    180031 4v9q:DE (3.4) BS01 rna ? GO:0003723 ... P62665 23824292
    180032 4v9q:DE (3.4) BS02 MG ? GO:0003723 ... P62665 23824292
    180033 4v9q:DF (3.4) BS01 rna ? GO:0003735 ... P62666 23824292
    180034 4v9q:DG (3.4) BS01 rna ? GO:0000028 ... P62667 23824292
    180035 4v9q:DG (3.4) BS02 rna ? GO:0000028 ... P62667 23824292
    180036 4v9q:DG (3.4) BS03 MG ? GO:0000028 ... P62667 23824292
    180037 4v9q:DG (3.4) BS04 MG ? GO:0000028 ... P62667 23824292
    180038 4v9q:DH (3.4) BS01 rna ? GO:0003735 ... P62668 23824292
    180039 4v9q:DH (3.4) BS02 MG ? GO:0003735 ... P62668 23824292
    180040 4v9q:DI (3.4) BS01 rna ? GO:0000049 ... P62669 23824292
    180041 4v9q:DI (3.4) BS02 rna ? GO:0000049 ... P62669 23824292
    180042 4v9q:DJ (3.4) BS01 rna ? GO:0000049 ... P62653 23824292
    180043 4v9q:DJ (3.4) BS02 MG ? GO:0000049 ... P62653 23824292
    180044 4v9q:DK (3.4) BS01 rna ? GO:0003735 ... P62654 23824292
    180045 4v9q:DL (3.4) BS01 rna ? GO:0000049 ... P61941 23824292
    180046 4v9q:DL (3.4) BS02 MG ? GO:0000049 ... P61941 23824292
    180047 4v9q:DM (3.4) BS01 rna ? GO:0000049 ... P62655 23824292
    180048 4v9q:DN (3.4) BS01 rna ? GO:0003735 ... P62656 23824292
    180049 4v9q:DN (3.4) BS02 ZN ? GO:0003735 ... P62656 23824292
    180050 4v9q:DO (3.4) BS01 rna ? GO:0003735 ... P62657 23824292
    180051 4v9q:DO (3.4) BS02 rna ? GO:0003735 ... P62657 23824292
    180052 4v9q:DP (3.4) BS01 rna ? GO:0003735 ... P62238 23824292
    180053 4v9q:DQ (3.4) BS01 rna ? GO:0003735 ... P62658 23824292
    180054 4v9q:DR (3.4) BS01 rna ? GO:0003735 ... P62659 23824292
    180055 4v9q:DR (3.4) BS02 MG ? GO:0003735 ... P62659 23824292
    180056 4v9q:DR (3.4) BS03 MG ? GO:0003735 ... P62659 23824292
    180057 4v9q:DS (3.4) BS01 rna ? GO:0003723 ... P62660 23824292
    180058 4v9q:DT (3.4) BS01 rna ? GO:0003723 ... P62661 23824292
    180059 4v9r:AB (3.0) BS01 rna ? GO:0003735 ... P80371 24412368
    180060 4v9r:AC (3.0) BS01 rna ? GO:0003676 ... P80372 24412368
    180061 4v9r:AD (3.0) BS01 rna ? GO:0003723 ... P80373 24412368
    180062 4v9r:AD (3.0) BS02 SF4 ? GO:0003723 ... P80373 24412368
    180063 4v9r:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    180064 4v9r:AE (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 24412368
    180065 4v9r:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    180066 4v9r:AG (3.0) BS01 rna ? GO:0000028 ... P17291 24412368
    180067 4v9r:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180068 4v9r:AI (3.0) BS01 rna ? GO:0000049 ... P80374 24412368
    180069 4v9r:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    180070 4v9r:AK (3.0) BS01 rna ? GO:0003735 ... P80376 24412368
    180071 4v9r:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    180072 4v9r:AL (3.0) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    180073 4v9r:AL (3.0) BS03 MG ? GO:0000049 ... Q5SHN3 24412368
    180074 4v9r:AM (3.0) BS01 rna ? GO:0000049 ... P80377 24412368
    180075 4v9r:AM (3.0) BS02 rna ? GO:0000049 ... P80377 24412368
    180076 4v9r:AM (3.0) BS03 MG ? GO:0000049 ... P80377 24412368
    180077 4v9r:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180078 4v9r:AN (3.0) BS02 MG N/A GO:0003735 ... N/A 24412368
    180079 4v9r:AN (3.0) BS03 ZN N/A GO:0003735 ... N/A 24412368
    180080 4v9r:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    180081 4v9r:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    180082 4v9r:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 24412368
    180083 4v9r:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180084 4v9r:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 24412368
    180085 4v9r:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 24412368
    180086 4v9r:AT (3.0) BS01 rna ? GO:0003723 ... P80380 24412368
    180087 4v9r:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 24412368
    180088 4v9r:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 24412368
    180089 4v9r:B0 (3.0) BS03 MG ? GO:0003735 ... P60493 24412368
    180090 4v9r:B0 (3.0) BS04 MG ? GO:0003735 ... P60493 24412368
    180091 4v9r:B0 (3.0) BS05 MG ? GO:0003735 ... P60493 24412368
    180092 4v9r:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 24412368
    180093 4v9r:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 24412368
    180094 4v9r:B2 (3.0) BS02 MG ? GO:0003735 ... Q5SHP6 24412368
    180095 4v9r:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 24412368
    180096 4v9r:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 24412368
    180097 4v9r:B3 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 24412368
    180098 4v9r:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 24412368
    180099 4v9r:B4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 24412368
    180100 4v9r:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 24412368
    180101 4v9r:B5 (3.0) BS02 ZN ? GO:0003735 ... P80339 24412368
    180102 4v9r:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 24412368
    180103 4v9r:B6 (3.0) BS02 ZN ? GO:0000049 ... P35871 24412368
    180104 4v9r:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 24412368
    180105 4v9r:B7 (3.0) BS02 MG ? GO:0003735 ... P80340 24412368
    180106 4v9r:B7 (3.0) BS03 MG ? GO:0003735 ... P80340 24412368
    180107 4v9r:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 24412368
    180108 4v9r:B8 (3.0) BS02 MG ? GO:0003735 ... Q5SKU1 24412368
    180109 4v9r:B9 (3.0) BS01 rna ? GO:0003735 ... P80256 24412368
    180110 4v9r:B9 (3.0) BS02 ZN ? GO:0003735 ... P80256 24412368
    180111 4v9r:BD (3.0) BS01 rna ? GO:0002181 ... P60405 24412368
    180112 4v9r:BD (3.0) BS02 MG ? GO:0002181 ... P60405 24412368
    180113 4v9r:BD (3.0) BS03 MG ? GO:0002181 ... P60405 24412368
    180114 4v9r:BD (3.0) BS04 MG ? GO:0002181 ... P60405 24412368
    180115 4v9r:BD (3.0) BS05 MG ? GO:0002181 ... P60405 24412368
    180116 4v9r:BD (3.0) BS06 MG ? GO:0002181 ... P60405 24412368
    180117 4v9r:BD (3.0) BS07 MG ? GO:0002181 ... P60405 24412368
    180118 4v9r:BD (3.0) BS08 MG ? GO:0002181 ... P60405 24412368
    180119 4v9r:BD (3.0) BS09 MG ? GO:0002181 ... P60405 24412368
    180120 4v9r:BD (3.0) BS10 MG ? GO:0002181 ... P60405 24412368
    180121 4v9r:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 24412368
    180122 4v9r:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 24412368
    180123 4v9r:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 24412368
    180124 4v9r:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 24412368
    180125 4v9r:BF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 24412368
    180126 4v9r:BF (3.0) BS04 MG ? GO:0003735 ... Q5SHN9 24412368
    180127 4v9r:BF (3.0) BS05 MG ? GO:0003735 ... Q5SHN9 24412368
    180128 4v9r:BF (3.0) BS06 MG ? GO:0003735 ... Q5SHN9 24412368
    180129 4v9r:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 24412368
    180130 4v9r:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 24412368
    180131 4v9r:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 24412368
    180132 4v9r:BG (3.0) BS04 MG ? GO:0000049 ... Q5SHQ0 24412368
    180133 4v9r:BG (3.0) BS05 MG ? GO:0000049 ... Q5SHQ0 24412368
    180134 4v9r:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180135 4v9r:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 24412368
    180136 4v9r:BN (3.0) BS01 rna ? GO:0003729 ... P60488 24412368
    180137 4v9r:BN (3.0) BS02 MG ? GO:0003729 ... P60488 24412368
    180138 4v9r:BN (3.0) BS03 MG ? GO:0003729 ... P60488 24412368
    180139 4v9r:BN (3.0) BS04 MG ? GO:0003729 ... P60488 24412368
    180140 4v9r:BN (3.0) BS05 MG ? GO:0003729 ... P60488 24412368
    180141 4v9r:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 24412368
    180142 4v9r:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 24412368
    180143 4v9r:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 24412368
    180144 4v9r:BP (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 24412368
    180145 4v9r:BP (3.0) BS03 MG ? GO:0003735 ... Q5SHQ7 24412368
    180146 4v9r:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 24412368
    180147 4v9r:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 24412368
    180148 4v9r:BQ (3.0) BS03 MG ? GO:0000049 ... P60489 24412368
    180149 4v9r:BQ (3.0) BS04 MG ? GO:0000049 ... P60489 24412368
    180150 4v9r:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 24412368
    180151 4v9r:BR (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 24412368
    180152 4v9r:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 24412368
    180153 4v9r:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 24412368
    180154 4v9r:BT (3.0) BS01 rna ? GO:0003735 ... P60490 24412368
    180155 4v9r:BT (3.0) BS02 rna ? GO:0003735 ... P60490 24412368
    180156 4v9r:BU (3.0) BS01 rna ? GO:0000027 ... P60491 24412368
    180157 4v9r:BU (3.0) BS02 MG ? GO:0000027 ... P60491 24412368
    180158 4v9r:BU (3.0) BS03 MG ? GO:0000027 ... P60491 24412368
    180159 4v9r:BU (3.0) BS04 MG ? GO:0000027 ... P60491 24412368
    180160 4v9r:BU (3.0) BS05 MG ? GO:0000027 ... P60491 24412368
    180161 4v9r:BU (3.0) BS06 MG ? GO:0000027 ... P60491 24412368
    180162 4v9r:BV (3.0) BS01 rna ? GO:0003723 ... P60492 24412368
    180163 4v9r:BV (3.0) BS02 MG ? GO:0003723 ... P60492 24412368
    180164 4v9r:BV (3.0) BS03 MG ? GO:0003723 ... P60492 24412368
    180165 4v9r:BV (3.0) BS04 MG ? GO:0003723 ... P60492 24412368
    180166 4v9r:BV (3.0) BS05 MG ? GO:0003723 ... P60492 24412368
    180167 4v9r:BV (3.0) BS06 MG ? GO:0003723 ... P60492 24412368
    180168 4v9r:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 24412368
    180169 4v9r:BW (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 24412368
    180170 4v9r:BW (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 24412368
    180171 4v9r:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 24412368
    180172 4v9r:BX (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 24412368
    180173 4v9r:BY (3.0) BS01 rna ? GO:0003723 ... Q56435 24412368
    180174 4v9r:BY (3.0) BS02 ZN ? GO:0003723 ... Q56435 24412368
    180175 4v9r:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 24412368
    180176 4v9r:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 24412368
    180177 4v9r:CB (3.0) BS01 rna ? GO:0003735 ... P80371 24412368
    180178 4v9r:CC (3.0) BS01 rna ? GO:0003676 ... P80372 24412368
    180179 4v9r:CD (3.0) BS01 rna ? GO:0003723 ... P80373 24412368
    180180 4v9r:CD (3.0) BS02 SF4 ? GO:0003723 ... P80373 24412368
    180181 4v9r:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 24412368
    180182 4v9r:CE (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 24412368
    180183 4v9r:CE (3.0) BS03 MG ? GO:0003723 ... Q5SHQ5 24412368
    180184 4v9r:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 24412368
    180185 4v9r:CF (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 24412368
    180186 4v9r:CG (3.0) BS01 rna ? GO:0000028 ... P17291 24412368
    180187 4v9r:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180188 4v9r:CI (3.0) BS01 rna ? GO:0000049 ... P80374 24412368
    180189 4v9r:CI (3.0) BS02 rna ? GO:0000049 ... P80374 24412368
    180190 4v9r:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 24412368
    180191 4v9r:CK (3.0) BS01 rna ? GO:0003735 ... P80376 24412368
    180192 4v9r:CK (3.0) BS02 MG ? GO:0003735 ... P80376 24412368
    180193 4v9r:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 24412368
    180194 4v9r:CL (3.0) BS02 peptide ? GO:0000049 ... Q5SHN3 24412368
    180195 4v9r:CM (3.0) BS01 rna ? GO:0000049 ... P80377 24412368
    180196 4v9r:CM (3.0) BS02 rna ? GO:0000049 ... P80377 24412368
    180197 4v9r:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 24412368
    180198 4v9r:CN (3.0) BS02 ZN N/A GO:0003735 ... N/A 24412368
    180199 4v9r:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 24412368
    180200 4v9r:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 24412368
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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