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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179601 4v9o:HM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179602 4v9o:HN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179603 4v9o:HO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179604 4v9o:HO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179605 4v9o:HP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179606 4v9o:HQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179607 4v9o:HR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179608 4v9o:HS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179609 4v9o:HT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    179610 4v9o:HU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    179611 4v9o:HV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179612 4v9o:HV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179613 4v9o:HV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179614 4v9p:A0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179615 4v9p:A1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179616 4v9p:A2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179617 4v9p:A3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179618 4v9p:A3 (2.9) BS02 MG ? GO:0002181 ... P0A7Q1 23812721
    179619 4v9p:A4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179620 4v9p:A4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179621 4v9p:A5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    179622 4v9p:AC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179623 4v9p:AD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179624 4v9p:AE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179625 4v9p:AF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179626 4v9p:AF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179627 4v9p:AG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179628 4v9p:AG (2.9) BS02 rna ? GO:0000027 ... P0AG55 23812721
    179629 4v9p:AH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179630 4v9p:AI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179631 4v9p:AJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179632 4v9p:AK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179633 4v9p:AK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179634 4v9p:AL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179635 4v9p:AM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179636 4v9p:AM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179637 4v9p:AN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179638 4v9p:AO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179639 4v9p:AO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179640 4v9p:AP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179641 4v9p:AP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179642 4v9p:AQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179643 4v9p:AR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179644 4v9p:AS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179645 4v9p:AT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179646 4v9p:AU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179647 4v9p:AV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179648 4v9p:AV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179649 4v9p:AW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179650 4v9p:AX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179651 4v9p:AY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179652 4v9p:AZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179653 4v9p:AZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    179654 4v9p:BB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179655 4v9p:BC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179656 4v9p:BD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179657 4v9p:BE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179658 4v9p:BF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179659 4v9p:BG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179660 4v9p:BH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    179661 4v9p:BI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179662 4v9p:BJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179663 4v9p:BK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179664 4v9p:BL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179665 4v9p:BM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179666 4v9p:BN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179667 4v9p:BO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179668 4v9p:BO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179669 4v9p:BP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179670 4v9p:BQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179671 4v9p:BR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179672 4v9p:BS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179673 4v9p:BT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    179674 4v9p:BU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    179675 4v9p:BV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179676 4v9p:BV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179677 4v9p:BV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179678 4v9p:C0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179679 4v9p:C1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179680 4v9p:C2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179681 4v9p:C3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179682 4v9p:C4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179683 4v9p:C4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179684 4v9p:CC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179685 4v9p:CD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179686 4v9p:CE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179687 4v9p:CF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179688 4v9p:CF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179689 4v9p:CG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179690 4v9p:CH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179691 4v9p:CH (2.9) BS02 rna ? GO:0003735 ... P0A7R1 23812721
    179692 4v9p:CI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179693 4v9p:CJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179694 4v9p:CK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179695 4v9p:CK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179696 4v9p:CL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179697 4v9p:CM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179698 4v9p:CM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179699 4v9p:CN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179700 4v9p:CO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179701 4v9p:CO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179702 4v9p:CP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179703 4v9p:CP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179704 4v9p:CQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179705 4v9p:CR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179706 4v9p:CS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179707 4v9p:CT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179708 4v9p:CU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179709 4v9p:CV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179710 4v9p:CV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179711 4v9p:CW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179712 4v9p:CX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179713 4v9p:CY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179714 4v9p:CZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179715 4v9p:CZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    179716 4v9p:DB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179717 4v9p:DC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179718 4v9p:DD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179719 4v9p:DE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179720 4v9p:DF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179721 4v9p:DG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179722 4v9p:DG (2.9) BS02 rna ? GO:0000028 ... P02359 23812721
    179723 4v9p:DH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    179724 4v9p:DI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179725 4v9p:DJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179726 4v9p:DK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179727 4v9p:DL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179728 4v9p:DM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179729 4v9p:DN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179730 4v9p:DO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179731 4v9p:DO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179732 4v9p:DP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179733 4v9p:DQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179734 4v9p:DR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179735 4v9p:DS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179736 4v9p:DT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    179737 4v9p:DU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    179738 4v9p:DV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179739 4v9p:DV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179740 4v9p:DV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179741 4v9p:E0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179742 4v9p:E1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179743 4v9p:E2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179744 4v9p:E3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179745 4v9p:E4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179746 4v9p:E4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179747 4v9p:E5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    179748 4v9p:EC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179749 4v9p:EC (2.9) BS02 MG ? GO:0000027 ... P60422 23812721
    179750 4v9p:ED (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179751 4v9p:EE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179752 4v9p:EF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179753 4v9p:EF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179754 4v9p:EG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179755 4v9p:EG (2.9) BS02 rna ? GO:0000027 ... P0AG55 23812721
    179756 4v9p:EH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179757 4v9p:EI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179758 4v9p:EJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179759 4v9p:EK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179760 4v9p:EK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179761 4v9p:EL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179762 4v9p:EM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179763 4v9p:EM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179764 4v9p:EN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179765 4v9p:EO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179766 4v9p:EO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179767 4v9p:EP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179768 4v9p:EP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179769 4v9p:EQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179770 4v9p:ER (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179771 4v9p:ES (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179772 4v9p:ET (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179773 4v9p:EU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179774 4v9p:EV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179775 4v9p:EV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179776 4v9p:EW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179777 4v9p:EX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179778 4v9p:EY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179779 4v9p:EZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179780 4v9p:EZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    179781 4v9p:FB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179782 4v9p:FC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179783 4v9p:FD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179784 4v9p:FE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179785 4v9p:FF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179786 4v9p:FG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179787 4v9p:FH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    179788 4v9p:FI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179789 4v9p:FJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179790 4v9p:FK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179791 4v9p:FL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179792 4v9p:FM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179793 4v9p:FN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179794 4v9p:FO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179795 4v9p:FO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179796 4v9p:FP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179797 4v9p:FQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179798 4v9p:FR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179799 4v9p:FS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179800 4v9p:FT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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