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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179401 4v9o:BI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179402 4v9o:BJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179403 4v9o:BK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179404 4v9o:BL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179405 4v9o:BM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179406 4v9o:BN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179407 4v9o:BO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179408 4v9o:BO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179409 4v9o:BP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179410 4v9o:BQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179411 4v9o:BR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179412 4v9o:BS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179413 4v9o:BT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    179414 4v9o:BU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    179415 4v9o:BV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179416 4v9o:BV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179417 4v9o:BV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179418 4v9o:C0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179419 4v9o:C1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179420 4v9o:C2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179421 4v9o:C3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179422 4v9o:C4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179423 4v9o:C4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179424 4v9o:C5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    179425 4v9o:CC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179426 4v9o:CC (2.9) BS02 rna ? GO:0000027 ... P60422 23812721
    179427 4v9o:CD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179428 4v9o:CE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179429 4v9o:CF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179430 4v9o:CF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179431 4v9o:CG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179432 4v9o:CH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179433 4v9o:CH (2.9) BS02 rna ? GO:0003735 ... P0A7R1 23812721
    179434 4v9o:CI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179435 4v9o:CJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179436 4v9o:CK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179437 4v9o:CK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179438 4v9o:CL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179439 4v9o:CM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179440 4v9o:CM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179441 4v9o:CN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179442 4v9o:CO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179443 4v9o:CO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179444 4v9o:CP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179445 4v9o:CP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179446 4v9o:CQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179447 4v9o:CR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179448 4v9o:CS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179449 4v9o:CT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179450 4v9o:CU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179451 4v9o:CV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179452 4v9o:CV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179453 4v9o:CW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179454 4v9o:CX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179455 4v9o:CY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179456 4v9o:CZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179457 4v9o:DB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179458 4v9o:DC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179459 4v9o:DD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179460 4v9o:DE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179461 4v9o:DF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179462 4v9o:DG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179463 4v9o:DH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    179464 4v9o:DI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179465 4v9o:DJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179466 4v9o:DK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179467 4v9o:DL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179468 4v9o:DM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179469 4v9o:DN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179470 4v9o:DO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179471 4v9o:DO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179472 4v9o:DP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179473 4v9o:DQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179474 4v9o:DR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179475 4v9o:DS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179476 4v9o:DT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    179477 4v9o:DU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    179478 4v9o:DV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179479 4v9o:DV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179480 4v9o:DV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179481 4v9o:E0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179482 4v9o:E1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179483 4v9o:E2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179484 4v9o:E3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179485 4v9o:E4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179486 4v9o:E4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179487 4v9o:E5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    179488 4v9o:EC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179489 4v9o:EC (2.9) BS02 rna ? GO:0000027 ... P60422 23812721
    179490 4v9o:EC (2.9) BS03 MG ? GO:0000027 ... P60422 23812721
    179491 4v9o:ED (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179492 4v9o:EE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179493 4v9o:EF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179494 4v9o:EF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179495 4v9o:EG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179496 4v9o:EG (2.9) BS02 rna ? GO:0000027 ... P0AG55 23812721
    179497 4v9o:EH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179498 4v9o:EI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179499 4v9o:EJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179500 4v9o:EK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179501 4v9o:EK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179502 4v9o:EL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179503 4v9o:EM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179504 4v9o:EM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179505 4v9o:EN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179506 4v9o:EO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179507 4v9o:EO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179508 4v9o:EP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179509 4v9o:EP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179510 4v9o:EQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179511 4v9o:ER (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179512 4v9o:ES (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179513 4v9o:ET (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179514 4v9o:EU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179515 4v9o:EV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179516 4v9o:EV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179517 4v9o:EW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179518 4v9o:EX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179519 4v9o:EY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179520 4v9o:EZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179521 4v9o:EZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    179522 4v9o:FB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179523 4v9o:FC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179524 4v9o:FD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179525 4v9o:FE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179526 4v9o:FE (2.9) BS02 MG ? GO:0000028 ... P0A7W1 23812721
    179527 4v9o:FF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179528 4v9o:FG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179529 4v9o:FH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    179530 4v9o:FI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179531 4v9o:FJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179532 4v9o:FK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179533 4v9o:FL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    179534 4v9o:FM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 23812721
    179535 4v9o:FN (2.9) BS01 rna ? GO:0000028 ... P0AG59 23812721
    179536 4v9o:FO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 23812721
    179537 4v9o:FO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 23812721
    179538 4v9o:FP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 23812721
    179539 4v9o:FQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 23812721
    179540 4v9o:FR (2.9) BS01 rna ? GO:0002181 ... P0A7T7 23812721
    179541 4v9o:FS (2.9) BS01 rna ? GO:0000028 ... P0A7U3 23812721
    179542 4v9o:FT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 23812721
    179543 4v9o:FU (2.9) BS01 rna ? GO:0000028 ... P68679 23812721
    179544 4v9o:FV (2.9) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179545 4v9o:FV (2.9) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179546 4v9o:FV (2.9) BS03 MG 3.6.5.- GO:0003746 ... P0A6M8 23812721
    179547 4v9o:G0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179548 4v9o:G1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179549 4v9o:G2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179550 4v9o:G3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179551 4v9o:G4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179552 4v9o:G4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179553 4v9o:GC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179554 4v9o:GD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179555 4v9o:GE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179556 4v9o:GE (2.9) BS02 MG ? GO:0001070 ... P60723 23812721
    179557 4v9o:GF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179558 4v9o:GF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179559 4v9o:GG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179560 4v9o:GH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179561 4v9o:GH (2.9) BS02 rna ? GO:0003735 ... P0A7R1 23812721
    179562 4v9o:GI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179563 4v9o:GJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179564 4v9o:GK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179565 4v9o:GK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179566 4v9o:GL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179567 4v9o:GL (2.9) BS02 MG ? GO:0002181 ... P02413 23812721
    179568 4v9o:GM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179569 4v9o:GM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179570 4v9o:GN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179571 4v9o:GO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179572 4v9o:GO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179573 4v9o:GP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179574 4v9o:GP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179575 4v9o:GQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179576 4v9o:GR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179577 4v9o:GS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179578 4v9o:GT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179579 4v9o:GU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179580 4v9o:GV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179581 4v9o:GV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179582 4v9o:GW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179583 4v9o:GX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179584 4v9o:GY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179585 4v9o:GZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179586 4v9o:GZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    179587 4v9o:HB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179588 4v9o:HC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179589 4v9o:HC (2.9) BS02 rna ? GO:0000028 ... P0A7V3 23812721
    179590 4v9o:HD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179591 4v9o:HE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179592 4v9o:HE (2.9) BS02 MG ? GO:0000028 ... P0A7W1 23812721
    179593 4v9o:HF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179594 4v9o:HG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179595 4v9o:HG (2.9) BS02 rna ? GO:0000028 ... P02359 23812721
    179596 4v9o:HH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    179597 4v9o:HI (2.9) BS01 rna ? GO:0000049 ... P0A7X3 23812721
    179598 4v9o:HJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 23812721
    179599 4v9o:HK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 23812721
    179600 4v9o:HL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 23812721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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