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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179201 4v9m:DG (4.0) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    179202 4v9m:DH (4.0) BS01 rna ? GO:0002181 ... Q72I19 23812722
    179203 4v9m:DK (4.0) BS01 rna ? GO:0003735 ... P62442 23812722
    179204 4v9m:DN (4.0) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    179205 4v9m:DO (4.0) BS01 rna ? GO:0003735 ... Q72I14 23812722
    179206 4v9m:DO (4.0) BS02 rna ? GO:0003735 ... Q72I14 23812722
    179207 4v9m:DP (4.0) BS01 rna ? GO:0003735 ... Q72I23 23812722
    179208 4v9m:DQ (4.0) BS01 rna ? GO:0000049 ... Q72I11 23812722
    179209 4v9m:DQ (4.0) BS02 rna ? GO:0000049 ... Q72I11 23812722
    179210 4v9m:DR (4.0) BS01 rna ? GO:0003735 ... Q72I33 23812722
    179211 4v9m:DS (4.0) BS01 rna ? GO:0003735 ... Q72I20 23812722
    179212 4v9m:DS (4.0) BS02 rna ? GO:0003735 ... Q72I20 23812722
    179213 4v9m:DT (4.0) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    179214 4v9m:DT (4.0) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    179215 4v9m:DU (4.0) BS01 rna ? GO:0000027 ... Q72L76 23812722
    179216 4v9m:DV (4.0) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    179217 4v9m:DW (4.0) BS01 rna ? GO:0003735 ... Q72I09 23812722
    179218 4v9m:DX (4.0) BS01 rna ? GO:0000027 ... Q72I06 23812722
    179219 4v9m:DY (4.0) BS01 rna ? GO:0003723 ... Q72I15 23812722
    179220 4v9m:DZ (4.0) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    179221 4v9m:DZ (4.0) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    179222 4v9n:AB (3.4) BS01 rna ? GO:0003735 ... P62662 23769667
    179223 4v9n:AD (3.4) BS01 rna ? GO:0003723 ... P62664 23769667
    179224 4v9n:AE (3.4) BS01 rna ? GO:0003723 ... P62665 23769667
    179225 4v9n:AE (3.4) BS02 rna ? GO:0003723 ... P62665 23769667
    179226 4v9n:AF (3.4) BS01 rna ? GO:0003735 ... P62666 23769667
    179227 4v9n:AG (3.4) BS01 rna ? GO:0000028 ... P62667 23769667
    179228 4v9n:AH (3.4) BS01 rna ? GO:0003735 ... P62668 23769667
    179229 4v9n:AI (3.4) BS01 rna ? GO:0000049 ... P62669 23769667
    179230 4v9n:AI (3.4) BS02 rna ? GO:0000049 ... P62669 23769667
    179231 4v9n:AJ (3.4) BS01 rna ? GO:0000049 ... P62653 23769667
    179232 4v9n:AK (3.4) BS01 rna ? GO:0003735 ... P62654 23769667
    179233 4v9n:AL (3.4) BS01 rna ? GO:0000049 ... P61941 23769667
    179234 4v9n:AM (3.4) BS01 rna ? GO:0000049 ... P62655 23769667
    179235 4v9n:AN (3.4) BS01 rna ? GO:0003735 ... P62656 23769667
    179236 4v9n:AN (3.4) BS02 ZN ? GO:0003735 ... P62656 23769667
    179237 4v9n:AO (3.4) BS01 rna ? GO:0003735 ... P62657 23769667
    179238 4v9n:AO (3.4) BS02 rna ? GO:0003735 ... P62657 23769667
    179239 4v9n:AP (3.4) BS01 rna ? GO:0003735 ... P62238 23769667
    179240 4v9n:AQ (3.4) BS01 rna ? GO:0003735 ... P62658 23769667
    179241 4v9n:AR (3.4) BS01 rna ? GO:0003735 ... P62659 23769667
    179242 4v9n:AS (3.4) BS01 rna ? GO:0003723 ... P62660 23769667
    179243 4v9n:AT (3.4) BS01 rna ? GO:0003723 ... P62661 23769667
    179244 4v9n:AY (3.4) BS01 rna ? GO:0003747 ... Q72GJ6 23769667
    179245 4v9n:AY (3.4) BS02 rna ? GO:0003747 ... Q72GJ6 23769667
    179246 4v9n:AY (3.4) BS03 rna ? GO:0003747 ... Q72GJ6 23769667
    179247 4v9n:AY (3.4) BS04 MG ? GO:0003747 ... Q72GJ6 23769667
    179248 4v9n:B0 (3.4) BS01 rna ? GO:0003735 ... Q72HR3 23769667
    179249 4v9n:B0 (3.4) BS02 rna ? GO:0003735 ... Q72HR3 23769667
    179250 4v9n:B1 (3.4) BS01 rna ? GO:0005840 ... Q72G84 23769667
    179251 4v9n:B2 (3.4) BS01 rna ? GO:0003735 ... Q72I12 23769667
    179252 4v9n:B3 (3.4) BS01 rna ? GO:0003735 ... Q72I22 23769667
    179253 4v9n:B3 (3.4) BS02 rna ? GO:0003735 ... Q72I22 23769667
    179254 4v9n:B5 (3.4) BS01 rna ? GO:0003735 ... P62652 23769667
    179255 4v9n:B6 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 23769667
    179256 4v9n:B7 (3.4) BS01 rna ? GO:0003735 ... P80340 23769667
    179257 4v9n:B8 (3.4) BS01 rna ? GO:0003735 ... Q72L77 23769667
    179258 4v9n:BD (3.4) BS01 rna ? GO:0002181 ... Q72I07 23769667
    179259 4v9n:BE (3.4) BS01 rna ? GO:0003735 ... Q72I04 23769667
    179260 4v9n:BF (3.4) BS01 rna ? GO:0003735 ... Q72I05 23769667
    179261 4v9n:BG (3.4) BS01 rna ? GO:0000049 ... Q72I16 23769667
    179262 4v9n:BG (3.4) BS02 rna ? GO:0000049 ... Q72I16 23769667
    179263 4v9n:BG (3.4) BS03 rna ? GO:0000049 ... Q72I16 23769667
    179264 4v9n:BH (3.4) BS01 rna ? GO:0003735 ... Q72I19 23769667
    179265 4v9n:BI (3.4) BS01 rna ? GO:0003735 ... Q72GV5 23769667
    179266 4v9n:BK (3.4) BS01 rna ? GO:0003735 ... P62442 23769667
    179267 4v9n:BN (3.4) BS01 rna ? GO:0003729 ... Q72IN1 23769667
    179268 4v9n:BO (3.4) BS01 rna ? GO:0003735 ... Q72I14 23769667
    179269 4v9n:BO (3.4) BS02 rna ? GO:0003735 ... Q72I14 23769667
    179270 4v9n:BP (3.4) BS01 rna ? GO:0003735 ... Q72I23 23769667
    179271 4v9n:BQ (3.4) BS01 rna ? GO:0000049 ... Q72I11 23769667
    179272 4v9n:BQ (3.4) BS02 rna ? GO:0000049 ... Q72I11 23769667
    179273 4v9n:BR (3.4) BS01 rna ? GO:0003735 ... Q72I33 23769667
    179274 4v9n:BS (3.4) BS01 rna ? GO:0003735 ... Q72I20 23769667
    179275 4v9n:BS (3.4) BS02 rna ? GO:0003735 ... Q72I20 23769667
    179276 4v9n:BS (3.4) BS03 MG ? GO:0003735 ... Q72I20 23769667
    179277 4v9n:BT (3.4) BS01 rna ? GO:0003735 ... Q72JU9 23769667
    179278 4v9n:BT (3.4) BS02 rna ? GO:0003735 ... Q72JU9 23769667
    179279 4v9n:BU (3.4) BS01 rna ? GO:0000027 ... Q72L76 23769667
    179280 4v9n:BV (3.4) BS01 rna ? GO:0003723 ... Q72HR2 23769667
    179281 4v9n:BW (3.4) BS01 rna ? GO:0003735 ... Q72I09 23769667
    179282 4v9n:BX (3.4) BS01 rna ? GO:0000027 ... Q72I06 23769667
    179283 4v9n:BY (3.4) BS01 rna ? GO:0003723 ... Q72I15 23769667
    179284 4v9n:BZ (3.4) BS01 rna ? GO:0003723 ... Q72IA7 23769667
    179285 4v9n:BZ (3.4) BS02 rna ? GO:0003723 ... Q72IA7 23769667
    179286 4v9n:CB (3.4) BS01 rna ? GO:0003735 ... P62662 23769667
    179287 4v9n:CD (3.4) BS01 rna ? GO:0003723 ... P62664 23769667
    179288 4v9n:CE (3.4) BS01 rna ? GO:0003723 ... P62665 23769667
    179289 4v9n:CE (3.4) BS02 rna ? GO:0003723 ... P62665 23769667
    179290 4v9n:CF (3.4) BS01 rna ? GO:0003735 ... P62666 23769667
    179291 4v9n:CG (3.4) BS01 rna ? GO:0000028 ... P62667 23769667
    179292 4v9n:CH (3.4) BS01 rna ? GO:0003735 ... P62668 23769667
    179293 4v9n:CI (3.4) BS01 rna ? GO:0000049 ... P62669 23769667
    179294 4v9n:CI (3.4) BS02 rna ? GO:0000049 ... P62669 23769667
    179295 4v9n:CJ (3.4) BS01 rna ? GO:0000049 ... P62653 23769667
    179296 4v9n:CK (3.4) BS01 rna ? GO:0003735 ... P62654 23769667
    179297 4v9n:CL (3.4) BS01 rna ? GO:0000049 ... P61941 23769667
    179298 4v9n:CM (3.4) BS01 rna ? GO:0000049 ... P62655 23769667
    179299 4v9n:CN (3.4) BS01 rna ? GO:0003735 ... P62656 23769667
    179300 4v9n:CN (3.4) BS02 ZN ? GO:0003735 ... P62656 23769667
    179301 4v9n:CO (3.4) BS01 rna ? GO:0003735 ... P62657 23769667
    179302 4v9n:CO (3.4) BS02 rna ? GO:0003735 ... P62657 23769667
    179303 4v9n:CP (3.4) BS01 rna ? GO:0003735 ... P62238 23769667
    179304 4v9n:CQ (3.4) BS01 rna ? GO:0003735 ... P62658 23769667
    179305 4v9n:CR (3.4) BS01 rna ? GO:0003735 ... P62659 23769667
    179306 4v9n:CR (3.4) BS02 MG ? GO:0003735 ... P62659 23769667
    179307 4v9n:CS (3.4) BS01 rna ? GO:0003723 ... P62660 23769667
    179308 4v9n:CT (3.4) BS01 rna ? GO:0003723 ... P62661 23769667
    179309 4v9n:CY (3.4) BS01 rna ? GO:0003747 ... Q72GJ6 23769667
    179310 4v9n:CY (3.4) BS02 rna ? GO:0003747 ... Q72GJ6 23769667
    179311 4v9n:CY (3.4) BS03 rna ? GO:0003747 ... Q72GJ6 23769667
    179312 4v9n:CY (3.4) BS04 MG ? GO:0003747 ... Q72GJ6 23769667
    179313 4v9n:D0 (3.4) BS01 rna ? GO:0003735 ... Q72HR3 23769667
    179314 4v9n:D0 (3.4) BS02 rna ? GO:0003735 ... Q72HR3 23769667
    179315 4v9n:D0 (3.4) BS03 MG ? GO:0003735 ... Q72HR3 23769667
    179316 4v9n:D1 (3.4) BS01 rna ? GO:0005840 ... Q72G84 23769667
    179317 4v9n:D2 (3.4) BS01 rna ? GO:0003735 ... Q72I12 23769667
    179318 4v9n:D3 (3.4) BS01 rna ? GO:0003735 ... Q72I22 23769667
    179319 4v9n:D3 (3.4) BS02 rna ? GO:0003735 ... Q72I22 23769667
    179320 4v9n:D5 (3.4) BS01 rna ? GO:0003735 ... P62652 23769667
    179321 4v9n:D6 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 23769667
    179322 4v9n:D7 (3.4) BS01 rna ? GO:0003735 ... P80340 23769667
    179323 4v9n:D8 (3.4) BS01 rna ? GO:0003735 ... Q72L77 23769667
    179324 4v9n:DD (3.4) BS01 rna ? GO:0002181 ... Q72I07 23769667
    179325 4v9n:DE (3.4) BS01 rna ? GO:0003735 ... Q72I04 23769667
    179326 4v9n:DF (3.4) BS01 rna ? GO:0003735 ... Q72I05 23769667
    179327 4v9n:DG (3.4) BS01 rna ? GO:0000049 ... Q72I16 23769667
    179328 4v9n:DG (3.4) BS02 rna ? GO:0000049 ... Q72I16 23769667
    179329 4v9n:DG (3.4) BS03 rna ? GO:0000049 ... Q72I16 23769667
    179330 4v9n:DH (3.4) BS01 rna ? GO:0003735 ... Q72I19 23769667
    179331 4v9n:DI (3.4) BS01 rna ? GO:0003735 ... Q72GV5 23769667
    179332 4v9n:DI (3.4) BS02 rna ? GO:0003735 ... Q72GV5 23769667
    179333 4v9n:DI (3.4) BS03 MG ? GO:0003735 ... Q72GV5 23769667
    179334 4v9n:DI (3.4) BS04 MG ? GO:0003735 ... Q72GV5 23769667
    179335 4v9n:DK (3.4) BS01 rna ? GO:0003735 ... P62442 23769667
    179336 4v9n:DN (3.4) BS01 rna ? GO:0003729 ... Q72IN1 23769667
    179337 4v9n:DO (3.4) BS01 rna ? GO:0003735 ... Q72I14 23769667
    179338 4v9n:DO (3.4) BS02 rna ? GO:0003735 ... Q72I14 23769667
    179339 4v9n:DP (3.4) BS01 rna ? GO:0003735 ... Q72I23 23769667
    179340 4v9n:DQ (3.4) BS01 rna ? GO:0000049 ... Q72I11 23769667
    179341 4v9n:DQ (3.4) BS02 rna ? GO:0000049 ... Q72I11 23769667
    179342 4v9n:DR (3.4) BS01 rna ? GO:0003735 ... Q72I33 23769667
    179343 4v9n:DS (3.4) BS01 rna ? GO:0003735 ... Q72I20 23769667
    179344 4v9n:DS (3.4) BS02 rna ? GO:0003735 ... Q72I20 23769667
    179345 4v9n:DT (3.4) BS01 rna ? GO:0003735 ... Q72JU9 23769667
    179346 4v9n:DT (3.4) BS02 rna ? GO:0003735 ... Q72JU9 23769667
    179347 4v9n:DU (3.4) BS01 rna ? GO:0000027 ... Q72L76 23769667
    179348 4v9n:DV (3.4) BS01 rna ? GO:0003723 ... Q72HR2 23769667
    179349 4v9n:DW (3.4) BS01 rna ? GO:0003735 ... Q72I09 23769667
    179350 4v9n:DX (3.4) BS01 rna ? GO:0000027 ... Q72I06 23769667
    179351 4v9n:DY (3.4) BS01 rna ? GO:0003723 ... Q72I15 23769667
    179352 4v9n:DZ (3.4) BS01 rna ? GO:0003723 ... Q72IA7 23769667
    179353 4v9n:DZ (3.4) BS02 rna ? GO:0003723 ... Q72IA7 23769667
    179354 4v9o:A0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 23812721
    179355 4v9o:A1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 23812721
    179356 4v9o:A2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 23812721
    179357 4v9o:A3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 23812721
    179358 4v9o:A4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 23812721
    179359 4v9o:A4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 23812721
    179360 4v9o:A5 (2.9) BS01 rna ? GO:0002181 ... P0A7J3 23812721
    179361 4v9o:AC (2.9) BS01 rna ? GO:0000027 ... P60422 23812721
    179362 4v9o:AC (2.9) BS02 rna ? GO:0000027 ... P60422 23812721
    179363 4v9o:AD (2.9) BS01 rna ? GO:0000027 ... P60438 23812721
    179364 4v9o:AE (2.9) BS01 rna ? GO:0001070 ... P60723 23812721
    179365 4v9o:AF (2.9) BS01 rna ? GO:0000027 ... P62399 23812721
    179366 4v9o:AF (2.9) BS02 rna ? GO:0000027 ... P62399 23812721
    179367 4v9o:AG (2.9) BS01 rna ? GO:0000027 ... P0AG55 23812721
    179368 4v9o:AG (2.9) BS02 rna ? GO:0000027 ... P0AG55 23812721
    179369 4v9o:AH (2.9) BS01 rna ? GO:0003735 ... P0A7R1 23812721
    179370 4v9o:AI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 23812721
    179371 4v9o:AJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 23812721
    179372 4v9o:AK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 23812721
    179373 4v9o:AK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 23812721
    179374 4v9o:AL (2.9) BS01 rna ? GO:0002181 ... P02413 23812721
    179375 4v9o:AM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 23812721
    179376 4v9o:AM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 23812721
    179377 4v9o:AN (2.9) BS01 rna ? GO:0000027 ... P0AG44 23812721
    179378 4v9o:AO (2.9) BS01 rna ? GO:0002181 ... P0C018 23812721
    179379 4v9o:AO (2.9) BS02 rna ? GO:0002181 ... P0C018 23812721
    179380 4v9o:AP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 23812721
    179381 4v9o:AP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 23812721
    179382 4v9o:AQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 23812721
    179383 4v9o:AR (2.9) BS01 rna ? GO:0002181 ... P0AG48 23812721
    179384 4v9o:AS (2.9) BS01 rna ? GO:0002181 ... P61175 23812721
    179385 4v9o:AT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 23812721
    179386 4v9o:AU (2.9) BS01 rna ? GO:0000027 ... P60624 23812721
    179387 4v9o:AV (2.9) BS01 rna ? GO:0000027 ... P68919 23812721
    179388 4v9o:AV (2.9) BS02 rna ? GO:0000027 ... P68919 23812721
    179389 4v9o:AW (2.9) BS01 rna ? GO:0000027 ... P0A7L8 23812721
    179390 4v9o:AX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 23812721
    179391 4v9o:AY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 23812721
    179392 4v9o:AZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 23812721
    179393 4v9o:AZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 23812721
    179394 4v9o:BB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 23812721
    179395 4v9o:BC (2.9) BS01 rna ? GO:0000028 ... P0A7V3 23812721
    179396 4v9o:BD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 23812721
    179397 4v9o:BE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 23812721
    179398 4v9o:BF (2.9) BS01 rna ? GO:0002181 ... P02358 23812721
    179399 4v9o:BG (2.9) BS01 rna ? GO:0000028 ... P02359 23812721
    179400 4v9o:BH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 23812721
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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