Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179001 4v9l:BO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    179002 4v9l:BO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    179003 4v9l:BP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    179004 4v9l:BQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    179005 4v9l:BQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    179006 4v9l:BR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    179007 4v9l:BS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    179008 4v9l:BS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    179009 4v9l:BT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    179010 4v9l:BT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    179011 4v9l:BU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    179012 4v9l:BV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    179013 4v9l:BW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    179014 4v9l:BX (3.5) BS01 rna ? GO:0000027 ... Q72I06 23812722
    179015 4v9l:BY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    179016 4v9l:BZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    179017 4v9l:BZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    179018 4v9l:CB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    179019 4v9l:CD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    179020 4v9l:CE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    179021 4v9l:CF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    179022 4v9l:CG (3.5) BS01 rna ? GO:0000028 ... P62667 23812722
    179023 4v9l:CH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    179024 4v9l:CI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    179025 4v9l:CI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    179026 4v9l:CJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    179027 4v9l:CK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    179028 4v9l:CK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    179029 4v9l:CL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    179030 4v9l:CM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    179031 4v9l:CM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    179032 4v9l:CN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    179033 4v9l:CO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    179034 4v9l:CO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    179035 4v9l:CP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    179036 4v9l:CQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    179037 4v9l:CR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    179038 4v9l:CS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    179039 4v9l:CS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    179040 4v9l:CT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    179041 4v9l:CY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    179042 4v9l:CY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    179043 4v9l:CY (3.5) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    179044 4v9l:CY (3.5) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    179045 4v9l:D0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    179046 4v9l:D0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    179047 4v9l:D1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    179048 4v9l:D1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    179049 4v9l:D2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    179050 4v9l:D3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    179051 4v9l:D3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    179052 4v9l:D4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    179053 4v9l:D5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    179054 4v9l:D6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    179055 4v9l:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    179056 4v9l:D8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    179057 4v9l:D9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    179058 4v9l:DC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    179059 4v9l:DC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    179060 4v9l:DD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    179061 4v9l:DD (3.5) BS02 rna ? GO:0002181 ... Q72I07 23812722
    179062 4v9l:DE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    179063 4v9l:DF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    179064 4v9l:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    179065 4v9l:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    179066 4v9l:DH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    179067 4v9l:DK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    179068 4v9l:DN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    179069 4v9l:DO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    179070 4v9l:DO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    179071 4v9l:DP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    179072 4v9l:DQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    179073 4v9l:DQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    179074 4v9l:DR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    179075 4v9l:DS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    179076 4v9l:DS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    179077 4v9l:DT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    179078 4v9l:DT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    179079 4v9l:DU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    179080 4v9l:DV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    179081 4v9l:DW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    179082 4v9l:DX (3.5) BS01 rna ? GO:0000027 ... Q72I06 23812722
    179083 4v9l:DY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    179084 4v9l:DZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    179085 4v9l:DZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    179086 4v9m:AB (4.0) BS01 rna ? GO:0003735 ... P62662 23812722
    179087 4v9m:AD (4.0) BS01 rna ? GO:0003723 ... P62664 23812722
    179088 4v9m:AE (4.0) BS01 rna ? GO:0003723 ... P62665 23812722
    179089 4v9m:AF (4.0) BS01 rna ? GO:0003735 ... P62666 23812722
    179090 4v9m:AF (4.0) BS02 rna ? GO:0003735 ... P62666 23812722
    179091 4v9m:AG (4.0) BS01 rna ? GO:0000028 ... P62667 23812722
    179092 4v9m:AH (4.0) BS01 rna ? GO:0003735 ... P62668 23812722
    179093 4v9m:AI (4.0) BS01 rna ? GO:0000049 ... P62669 23812722
    179094 4v9m:AI (4.0) BS02 rna ? GO:0000049 ... P62669 23812722
    179095 4v9m:AJ (4.0) BS01 rna ? GO:0000049 ... P62653 23812722
    179096 4v9m:AK (4.0) BS01 rna ? GO:0003735 ... P62654 23812722
    179097 4v9m:AK (4.0) BS02 rna ? GO:0003735 ... P62654 23812722
    179098 4v9m:AL (4.0) BS01 rna ? GO:0000049 ... P61941 23812722
    179099 4v9m:AM (4.0) BS01 rna ? GO:0000049 ... P62655 23812722
    179100 4v9m:AN (4.0) BS01 rna ? GO:0003735 ... P62656 23812722
    179101 4v9m:AO (4.0) BS01 rna ? GO:0003735 ... P62657 23812722
    179102 4v9m:AO (4.0) BS02 rna ? GO:0003735 ... P62657 23812722
    179103 4v9m:AP (4.0) BS01 rna ? GO:0003735 ... P62238 23812722
    179104 4v9m:AQ (4.0) BS01 rna ? GO:0003735 ... P62658 23812722
    179105 4v9m:AR (4.0) BS01 rna ? GO:0003735 ... P62659 23812722
    179106 4v9m:AS (4.0) BS01 rna ? GO:0003723 ... P62660 23812722
    179107 4v9m:AS (4.0) BS02 rna ? GO:0003723 ... P62660 23812722
    179108 4v9m:AT (4.0) BS01 rna ? GO:0003723 ... P62661 23812722
    179109 4v9m:AY (4.0) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    179110 4v9m:AY (4.0) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    179111 4v9m:AY (4.0) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    179112 4v9m:AY (4.0) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    179113 4v9m:B0 (4.0) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    179114 4v9m:B0 (4.0) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    179115 4v9m:B1 (4.0) BS01 rna ? GO:0003735 ... Q72G84 23812722
    179116 4v9m:B1 (4.0) BS02 rna ? GO:0003735 ... Q72G84 23812722
    179117 4v9m:B2 (4.0) BS01 rna ? GO:0003735 ... Q72I12 23812722
    179118 4v9m:B3 (4.0) BS01 rna ? GO:0003735 ... Q72I22 23812722
    179119 4v9m:B3 (4.0) BS02 rna ? GO:0003735 ... Q72I22 23812722
    179120 4v9m:B4 (4.0) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    179121 4v9m:B5 (4.0) BS01 rna ? GO:0003735 ... P62652 23812722
    179122 4v9m:B6 (4.0) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    179123 4v9m:B7 (4.0) BS01 rna ? GO:0003735 ... P80340 23812722
    179124 4v9m:B8 (4.0) BS01 rna ? GO:0003735 ... Q72L77 23812722
    179125 4v9m:B9 (4.0) BS01 rna ? GO:0003735 ... Q72I28 23812722
    179126 4v9m:BC (4.0) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    179127 4v9m:BC (4.0) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    179128 4v9m:BD (4.0) BS01 rna ? GO:0002181 ... Q72I07 23812722
    179129 4v9m:BD (4.0) BS02 rna ? GO:0002181 ... Q72I07 23812722
    179130 4v9m:BE (4.0) BS01 rna ? GO:0003735 ... Q72I04 23812722
    179131 4v9m:BF (4.0) BS01 rna ? GO:0003735 ... Q72I05 23812722
    179132 4v9m:BG (4.0) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    179133 4v9m:BG (4.0) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    179134 4v9m:BH (4.0) BS01 rna ? GO:0002181 ... Q72I19 23812722
    179135 4v9m:BK (4.0) BS01 rna ? GO:0003735 ... P62442 23812722
    179136 4v9m:BN (4.0) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    179137 4v9m:BO (4.0) BS01 rna ? GO:0003735 ... Q72I14 23812722
    179138 4v9m:BO (4.0) BS02 rna ? GO:0003735 ... Q72I14 23812722
    179139 4v9m:BP (4.0) BS01 rna ? GO:0003735 ... Q72I23 23812722
    179140 4v9m:BQ (4.0) BS01 rna ? GO:0000049 ... Q72I11 23812722
    179141 4v9m:BQ (4.0) BS02 rna ? GO:0000049 ... Q72I11 23812722
    179142 4v9m:BR (4.0) BS01 rna ? GO:0003735 ... Q72I33 23812722
    179143 4v9m:BS (4.0) BS01 rna ? GO:0003735 ... Q72I20 23812722
    179144 4v9m:BS (4.0) BS02 rna ? GO:0003735 ... Q72I20 23812722
    179145 4v9m:BT (4.0) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    179146 4v9m:BT (4.0) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    179147 4v9m:BU (4.0) BS01 rna ? GO:0000027 ... Q72L76 23812722
    179148 4v9m:BV (4.0) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    179149 4v9m:BW (4.0) BS01 rna ? GO:0003735 ... Q72I09 23812722
    179150 4v9m:BX (4.0) BS01 rna ? GO:0000027 ... Q72I06 23812722
    179151 4v9m:BY (4.0) BS01 rna ? GO:0003723 ... Q72I15 23812722
    179152 4v9m:BZ (4.0) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    179153 4v9m:BZ (4.0) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    179154 4v9m:CB (4.0) BS01 rna ? GO:0003735 ... P62662 23812722
    179155 4v9m:CD (4.0) BS01 rna ? GO:0003723 ... P62664 23812722
    179156 4v9m:CE (4.0) BS01 rna ? GO:0003723 ... P62665 23812722
    179157 4v9m:CF (4.0) BS01 rna ? GO:0003735 ... P62666 23812722
    179158 4v9m:CG (4.0) BS01 rna ? GO:0000028 ... P62667 23812722
    179159 4v9m:CH (4.0) BS01 rna ? GO:0003735 ... P62668 23812722
    179160 4v9m:CI (4.0) BS01 rna ? GO:0000049 ... P62669 23812722
    179161 4v9m:CI (4.0) BS02 rna ? GO:0000049 ... P62669 23812722
    179162 4v9m:CJ (4.0) BS01 rna ? GO:0000049 ... P62653 23812722
    179163 4v9m:CK (4.0) BS01 rna ? GO:0003735 ... P62654 23812722
    179164 4v9m:CK (4.0) BS02 rna ? GO:0003735 ... P62654 23812722
    179165 4v9m:CK (4.0) BS03 rna ? GO:0003735 ... P62654 23812722
    179166 4v9m:CL (4.0) BS01 rna ? GO:0000049 ... P61941 23812722
    179167 4v9m:CM (4.0) BS01 rna ? GO:0000049 ... P62655 23812722
    179168 4v9m:CM (4.0) BS02 rna ? GO:0000049 ... P62655 23812722
    179169 4v9m:CN (4.0) BS01 rna ? GO:0003735 ... P62656 23812722
    179170 4v9m:CO (4.0) BS01 rna ? GO:0003735 ... P62657 23812722
    179171 4v9m:CO (4.0) BS02 rna ? GO:0003735 ... P62657 23812722
    179172 4v9m:CP (4.0) BS01 rna ? GO:0003735 ... P62238 23812722
    179173 4v9m:CQ (4.0) BS01 rna ? GO:0003735 ... P62658 23812722
    179174 4v9m:CR (4.0) BS01 rna ? GO:0003735 ... P62659 23812722
    179175 4v9m:CS (4.0) BS01 rna ? GO:0003723 ... P62660 23812722
    179176 4v9m:CS (4.0) BS02 rna ? GO:0003723 ... P62660 23812722
    179177 4v9m:CT (4.0) BS01 rna ? GO:0003723 ... P62661 23812722
    179178 4v9m:CY (4.0) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    179179 4v9m:CY (4.0) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    179180 4v9m:CY (4.0) BS03 FUA ? GO:0003746 ... Q5SHN5 23812722
    179181 4v9m:CY (4.0) BS04 GDP ? GO:0003746 ... Q5SHN5 23812722
    179182 4v9m:D0 (4.0) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    179183 4v9m:D0 (4.0) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    179184 4v9m:D1 (4.0) BS01 rna ? GO:0003735 ... Q72G84 23812722
    179185 4v9m:D1 (4.0) BS02 rna ? GO:0003735 ... Q72G84 23812722
    179186 4v9m:D2 (4.0) BS01 rna ? GO:0003735 ... Q72I12 23812722
    179187 4v9m:D3 (4.0) BS01 rna ? GO:0003735 ... Q72I22 23812722
    179188 4v9m:D3 (4.0) BS02 rna ? GO:0003735 ... Q72I22 23812722
    179189 4v9m:D4 (4.0) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    179190 4v9m:D5 (4.0) BS01 rna ? GO:0003735 ... P62652 23812722
    179191 4v9m:D6 (4.0) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    179192 4v9m:D7 (4.0) BS01 rna ? GO:0003735 ... P80340 23812722
    179193 4v9m:D8 (4.0) BS01 rna ? GO:0003735 ... Q72L77 23812722
    179194 4v9m:D9 (4.0) BS01 rna ? GO:0003735 ... Q72I28 23812722
    179195 4v9m:DC (4.0) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    179196 4v9m:DC (4.0) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    179197 4v9m:DD (4.0) BS01 rna ? GO:0002181 ... Q72I07 23812722
    179198 4v9m:DE (4.0) BS01 rna ? GO:0003735 ... Q72I04 23812722
    179199 4v9m:DF (4.0) BS01 rna ? GO:0003735 ... Q72I05 23812722
    179200 4v9m:DG (4.0) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417