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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178801 4v9j:DH (3.86) BS01 rna ? GO:0002181 ... Q72I19 23812722
    178802 4v9j:DK (3.86) BS01 rna ? GO:0003735 ... P62442 23812722
    178803 4v9j:DN (3.86) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    178804 4v9j:DO (3.86) BS01 rna ? GO:0003735 ... Q72I14 23812722
    178805 4v9j:DO (3.86) BS02 rna ? GO:0003735 ... Q72I14 23812722
    178806 4v9j:DP (3.86) BS01 rna ? GO:0003735 ... Q72I23 23812722
    178807 4v9j:DQ (3.86) BS01 rna ? GO:0000049 ... Q72I11 23812722
    178808 4v9j:DQ (3.86) BS02 rna ? GO:0000049 ... Q72I11 23812722
    178809 4v9j:DR (3.86) BS01 rna ? GO:0003735 ... Q72I33 23812722
    178810 4v9j:DS (3.86) BS01 rna ? GO:0003735 ... Q72I20 23812722
    178811 4v9j:DS (3.86) BS02 rna ? GO:0003735 ... Q72I20 23812722
    178812 4v9j:DT (3.86) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    178813 4v9j:DT (3.86) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    178814 4v9j:DU (3.86) BS01 rna ? GO:0000027 ... Q72L76 23812722
    178815 4v9j:DV (3.86) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    178816 4v9j:DW (3.86) BS01 rna ? GO:0003735 ... Q72I09 23812722
    178817 4v9j:DX (3.86) BS01 rna ? GO:0000027 ... Q72I06 23812722
    178818 4v9j:DY (3.86) BS01 rna ? GO:0003723 ... Q72I15 23812722
    178819 4v9j:DZ (3.86) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    178820 4v9j:DZ (3.86) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    178821 4v9k:AB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    178822 4v9k:AD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    178823 4v9k:AE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    178824 4v9k:AF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    178825 4v9k:AG (3.5) BS01 rna ? GO:0000028 ... P62667 23812722
    178826 4v9k:AH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    178827 4v9k:AI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    178828 4v9k:AI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    178829 4v9k:AJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    178830 4v9k:AK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    178831 4v9k:AL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    178832 4v9k:AM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    178833 4v9k:AM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    178834 4v9k:AN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    178835 4v9k:AO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    178836 4v9k:AO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    178837 4v9k:AP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    178838 4v9k:AQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    178839 4v9k:AR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    178840 4v9k:AS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    178841 4v9k:AS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    178842 4v9k:AT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    178843 4v9k:AY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    178844 4v9k:AY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    178845 4v9k:AY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    178846 4v9k:AY (3.5) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    178847 4v9k:B0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    178848 4v9k:B0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    178849 4v9k:B1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    178850 4v9k:B1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    178851 4v9k:B2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    178852 4v9k:B3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    178853 4v9k:B3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    178854 4v9k:B4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    178855 4v9k:B5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    178856 4v9k:B6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    178857 4v9k:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    178858 4v9k:B8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    178859 4v9k:B9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    178860 4v9k:BC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    178861 4v9k:BC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    178862 4v9k:BD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    178863 4v9k:BD (3.5) BS02 rna ? GO:0002181 ... Q72I07 23812722
    178864 4v9k:BE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    178865 4v9k:BF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    178866 4v9k:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    178867 4v9k:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    178868 4v9k:BH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    178869 4v9k:BK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    178870 4v9k:BN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    178871 4v9k:BO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    178872 4v9k:BO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    178873 4v9k:BP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    178874 4v9k:BQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    178875 4v9k:BQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    178876 4v9k:BR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    178877 4v9k:BS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    178878 4v9k:BS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    178879 4v9k:BT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    178880 4v9k:BT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    178881 4v9k:BU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    178882 4v9k:BV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    178883 4v9k:BW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    178884 4v9k:BX (3.5) BS01 rna ? GO:0000027 ... Q72I06 23812722
    178885 4v9k:BY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    178886 4v9k:BZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    178887 4v9k:BZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    178888 4v9k:CB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    178889 4v9k:CD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    178890 4v9k:CE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    178891 4v9k:CF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    178892 4v9k:CG (3.5) BS01 rna ? GO:0000028 ... P62667 23812722
    178893 4v9k:CH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    178894 4v9k:CI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    178895 4v9k:CI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    178896 4v9k:CJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    178897 4v9k:CK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    178898 4v9k:CK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    178899 4v9k:CL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    178900 4v9k:CM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    178901 4v9k:CM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    178902 4v9k:CN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    178903 4v9k:CO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    178904 4v9k:CO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    178905 4v9k:CP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    178906 4v9k:CQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    178907 4v9k:CR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    178908 4v9k:CS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    178909 4v9k:CS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    178910 4v9k:CT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    178911 4v9k:CY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    178912 4v9k:CY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    178913 4v9k:CY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    178914 4v9k:CY (3.5) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    178915 4v9k:D0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    178916 4v9k:D0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    178917 4v9k:D1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    178918 4v9k:D1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    178919 4v9k:D2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    178920 4v9k:D3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    178921 4v9k:D4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    178922 4v9k:D5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    178923 4v9k:D6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    178924 4v9k:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    178925 4v9k:D8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    178926 4v9k:D9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    178927 4v9k:DC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    178928 4v9k:DC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    178929 4v9k:DD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    178930 4v9k:DE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    178931 4v9k:DF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    178932 4v9k:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    178933 4v9k:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    178934 4v9k:DH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    178935 4v9k:DK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    178936 4v9k:DN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    178937 4v9k:DO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    178938 4v9k:DO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    178939 4v9k:DP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    178940 4v9k:DQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    178941 4v9k:DQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    178942 4v9k:DR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    178943 4v9k:DS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    178944 4v9k:DS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    178945 4v9k:DT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    178946 4v9k:DT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    178947 4v9k:DU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    178948 4v9k:DV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    178949 4v9k:DW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    178950 4v9k:DX (3.5) BS01 rna ? GO:0000027 ... Q72I06 23812722
    178951 4v9k:DY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    178952 4v9k:DZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    178953 4v9k:DZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    178954 4v9l:AB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    178955 4v9l:AD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    178956 4v9l:AE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    178957 4v9l:AF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    178958 4v9l:AG (3.5) BS01 rna ? GO:0000028 ... P62667 23812722
    178959 4v9l:AH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    178960 4v9l:AI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    178961 4v9l:AJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    178962 4v9l:AK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    178963 4v9l:AK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    178964 4v9l:AL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    178965 4v9l:AM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    178966 4v9l:AN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    178967 4v9l:AO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    178968 4v9l:AO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    178969 4v9l:AP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    178970 4v9l:AQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    178971 4v9l:AR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    178972 4v9l:AS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    178973 4v9l:AS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    178974 4v9l:AT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    178975 4v9l:AY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    178976 4v9l:AY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    178977 4v9l:AY (3.5) BS03 GDP ? GO:0003746 ... Q5SHN5 23812722
    178978 4v9l:B0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    178979 4v9l:B0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    178980 4v9l:B1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    178981 4v9l:B1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    178982 4v9l:B2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    178983 4v9l:B3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    178984 4v9l:B3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    178985 4v9l:B4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    178986 4v9l:B5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    178987 4v9l:B6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    178988 4v9l:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    178989 4v9l:B8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    178990 4v9l:B9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    178991 4v9l:BC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    178992 4v9l:BC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    178993 4v9l:BD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    178994 4v9l:BE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    178995 4v9l:BF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    178996 4v9l:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    178997 4v9l:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    178998 4v9l:BH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    178999 4v9l:BK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    179000 4v9l:BN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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