Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178601 4v9i:BG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 23812587
    178602 4v9i:BG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 23812587
    178603 4v9i:BG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 23812587
    178604 4v9i:BH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178605 4v9i:BI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 23812587
    178606 4v9i:BI (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 23812587
    178607 4v9i:BN (3.3) BS01 rna ? GO:0003729 ... P60488 23812587
    178608 4v9i:BO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 23812587
    178609 4v9i:BO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 23812587
    178610 4v9i:BP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 23812587
    178611 4v9i:BQ (3.3) BS01 rna ? GO:0000049 ... P60489 23812587
    178612 4v9i:BQ (3.3) BS02 rna ? GO:0000049 ... P60489 23812587
    178613 4v9i:BQ (3.3) BS03 rna ? GO:0000049 ... P60489 23812587
    178614 4v9i:BR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 23812587
    178615 4v9i:BS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 23812587
    178616 4v9i:BS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 23812587
    178617 4v9i:BT (3.3) BS01 rna ? GO:0003735 ... P60490 23812587
    178618 4v9i:BT (3.3) BS02 rna ? GO:0003735 ... P60490 23812587
    178619 4v9i:BU (3.3) BS01 rna ? GO:0000027 ... P60491 23812587
    178620 4v9i:BV (3.3) BS01 rna ? GO:0003723 ... P60492 23812587
    178621 4v9i:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 23812587
    178622 4v9i:BX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 23812587
    178623 4v9i:BY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 23812587
    178624 4v9i:BZ (3.3) BS01 rna ? GO:0003735 ... Q5SHZ1 23812587
    178625 4v9i:BZ (3.3) BS02 rna ? GO:0003735 ... Q5SHZ1 23812587
    178626 4v9i:CB (3.3) BS01 rna ? GO:0003735 ... P80371 23812587
    178627 4v9i:CD (3.3) BS01 rna ? GO:0003723 ... P80373 23812587
    178628 4v9i:CE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 23812587
    178629 4v9i:CF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 23812587
    178630 4v9i:CG (3.3) BS01 rna ? GO:0000028 ... P17291 23812587
    178631 4v9i:CG (3.3) BS02 rna ? GO:0000028 ... P17291 23812587
    178632 4v9i:CH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178633 4v9i:CI (3.3) BS01 rna ? GO:0000049 ... P80374 23812587
    178634 4v9i:CJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 23812587
    178635 4v9i:CK (3.3) BS01 rna ? GO:0003735 ... P80376 23812587
    178636 4v9i:CL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 23812587
    178637 4v9i:CM (3.3) BS01 rna ? GO:0000049 ... P80377 23812587
    178638 4v9i:CM (3.3) BS02 rna ? GO:0000049 ... P80377 23812587
    178639 4v9i:CM (3.3) BS03 rna ? GO:0000049 ... P80377 23812587
    178640 4v9i:CM (3.3) BS04 rna ? GO:0000049 ... P80377 23812587
    178641 4v9i:CN (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178642 4v9i:CO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 23812587
    178643 4v9i:CO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 23812587
    178644 4v9i:CP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 23812587
    178645 4v9i:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178646 4v9i:CR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 23812587
    178647 4v9i:CS (3.3) BS01 rna ? GO:0003723 ... Q5SHP2 23812587
    178648 4v9i:CT (3.3) BS01 rna ? GO:0003723 ... P80380 23812587
    178649 4v9i:D0 (3.3) BS01 rna ? GO:0003735 ... P60493 23812587
    178650 4v9i:D0 (3.3) BS02 rna ? GO:0003735 ... P60493 23812587
    178651 4v9i:D1 (3.3) BS01 rna ? GO:0003735 ... P60494 23812587
    178652 4v9i:D2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 23812587
    178653 4v9i:D3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 23812587
    178654 4v9i:D3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 23812587
    178655 4v9i:D5 (3.3) BS01 rna ? GO:0003735 ... P80339 23812587
    178656 4v9i:D6 (3.3) BS01 rna ? GO:0003735 ... P35871 23812587
    178657 4v9i:D7 (3.3) BS01 rna ? GO:0003735 ... P80340 23812587
    178658 4v9i:D8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 23812587
    178659 4v9i:D9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 23812587
    178660 4v9i:DD (3.3) BS01 rna ? GO:0002181 ... P60405 23812587
    178661 4v9i:DD (3.3) BS02 rna ? GO:0002181 ... P60405 23812587
    178662 4v9i:DE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 23812587
    178663 4v9i:DF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 23812587
    178664 4v9i:DG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 23812587
    178665 4v9i:DG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 23812587
    178666 4v9i:DG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 23812587
    178667 4v9i:DH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178668 4v9i:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 23812587
    178669 4v9i:DN (3.3) BS01 rna ? GO:0003729 ... P60488 23812587
    178670 4v9i:DO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 23812587
    178671 4v9i:DO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 23812587
    178672 4v9i:DP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 23812587
    178673 4v9i:DQ (3.3) BS01 rna ? GO:0000049 ... P60489 23812587
    178674 4v9i:DQ (3.3) BS02 rna ? GO:0000049 ... P60489 23812587
    178675 4v9i:DQ (3.3) BS03 rna ? GO:0000049 ... P60489 23812587
    178676 4v9i:DQ (3.3) BS04 rna ? GO:0000049 ... P60489 23812587
    178677 4v9i:DR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 23812587
    178678 4v9i:DS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 23812587
    178679 4v9i:DS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 23812587
    178680 4v9i:DT (3.3) BS01 rna ? GO:0003735 ... P60490 23812587
    178681 4v9i:DT (3.3) BS02 rna ? GO:0003735 ... P60490 23812587
    178682 4v9i:DU (3.3) BS01 rna ? GO:0000027 ... P60491 23812587
    178683 4v9i:DV (3.3) BS01 rna ? GO:0003723 ... P60492 23812587
    178684 4v9i:DW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 23812587
    178685 4v9i:DX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 23812587
    178686 4v9i:DY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 23812587
    178687 4v9i:DZ (3.3) BS01 rna ? GO:0003735 ... Q5SHZ1 23812587
    178688 4v9i:DZ (3.3) BS02 rna ? GO:0003735 ... Q5SHZ1 23812587
    178689 4v9j:AB (3.86) BS01 rna ? GO:0003735 ... P62662 23812722
    178690 4v9j:AD (3.86) BS01 rna ? GO:0003723 ... P62664 23812722
    178691 4v9j:AE (3.86) BS01 rna ? GO:0003723 ... P62665 23812722
    178692 4v9j:AF (3.86) BS01 rna ? GO:0003735 ... P62666 23812722
    178693 4v9j:AG (3.86) BS01 rna ? GO:0000028 ... P62667 23812722
    178694 4v9j:AH (3.86) BS01 rna ? GO:0003735 ... P62668 23812722
    178695 4v9j:AI (3.86) BS01 rna ? GO:0000049 ... P62669 23812722
    178696 4v9j:AJ (3.86) BS01 rna ? GO:0000049 ... P62653 23812722
    178697 4v9j:AK (3.86) BS01 rna ? GO:0003735 ... P62654 23812722
    178698 4v9j:AL (3.86) BS01 rna ? GO:0000049 ... P61941 23812722
    178699 4v9j:AM (3.86) BS01 rna ? GO:0000049 ... P62655 23812722
    178700 4v9j:AM (3.86) BS02 rna ? GO:0000049 ... P62655 23812722
    178701 4v9j:AN (3.86) BS01 rna ? GO:0003735 ... P62656 23812722
    178702 4v9j:AO (3.86) BS01 rna ? GO:0003735 ... P62657 23812722
    178703 4v9j:AO (3.86) BS02 rna ? GO:0003735 ... P62657 23812722
    178704 4v9j:AP (3.86) BS01 rna ? GO:0003735 ... P62238 23812722
    178705 4v9j:AQ (3.86) BS01 rna ? GO:0003735 ... P62658 23812722
    178706 4v9j:AR (3.86) BS01 rna ? GO:0003735 ... P62659 23812722
    178707 4v9j:AS (3.86) BS01 rna ? GO:0003723 ... P62660 23812722
    178708 4v9j:AS (3.86) BS02 rna ? GO:0003723 ... P62660 23812722
    178709 4v9j:AT (3.86) BS01 rna ? GO:0003723 ... P62661 23812722
    178710 4v9j:AY (3.86) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    178711 4v9j:AY (3.86) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    178712 4v9j:AY (3.86) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    178713 4v9j:AY (3.86) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    178714 4v9j:B0 (3.86) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    178715 4v9j:B0 (3.86) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    178716 4v9j:B1 (3.86) BS01 rna ? GO:0003735 ... Q72G84 23812722
    178717 4v9j:B1 (3.86) BS02 rna ? GO:0003735 ... Q72G84 23812722
    178718 4v9j:B2 (3.86) BS01 rna ? GO:0003735 ... Q72I12 23812722
    178719 4v9j:B3 (3.86) BS01 rna ? GO:0003735 ... Q72I22 23812722
    178720 4v9j:B3 (3.86) BS02 rna ? GO:0003735 ... Q72I22 23812722
    178721 4v9j:B4 (3.86) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    178722 4v9j:B5 (3.86) BS01 rna ? GO:0003735 ... P62652 23812722
    178723 4v9j:B6 (3.86) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    178724 4v9j:B7 (3.86) BS01 rna ? GO:0003735 ... P80340 23812722
    178725 4v9j:B8 (3.86) BS01 rna ? GO:0003735 ... Q72L77 23812722
    178726 4v9j:B9 (3.86) BS01 rna ? GO:0003735 ... Q72I28 23812722
    178727 4v9j:BC (3.86) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    178728 4v9j:BC (3.86) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    178729 4v9j:BD (3.86) BS01 rna ? GO:0002181 ... Q72I07 23812722
    178730 4v9j:BE (3.86) BS01 rna ? GO:0003735 ... Q72I04 23812722
    178731 4v9j:BF (3.86) BS01 rna ? GO:0003735 ... Q72I05 23812722
    178732 4v9j:BG (3.86) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    178733 4v9j:BG (3.86) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    178734 4v9j:BH (3.86) BS01 rna ? GO:0002181 ... Q72I19 23812722
    178735 4v9j:BK (3.86) BS01 rna ? GO:0003735 ... P62442 23812722
    178736 4v9j:BN (3.86) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    178737 4v9j:BO (3.86) BS01 rna ? GO:0003735 ... Q72I14 23812722
    178738 4v9j:BO (3.86) BS02 rna ? GO:0003735 ... Q72I14 23812722
    178739 4v9j:BP (3.86) BS01 rna ? GO:0003735 ... Q72I23 23812722
    178740 4v9j:BQ (3.86) BS01 rna ? GO:0000049 ... Q72I11 23812722
    178741 4v9j:BQ (3.86) BS02 rna ? GO:0000049 ... Q72I11 23812722
    178742 4v9j:BR (3.86) BS01 rna ? GO:0003735 ... Q72I33 23812722
    178743 4v9j:BS (3.86) BS01 rna ? GO:0003735 ... Q72I20 23812722
    178744 4v9j:BS (3.86) BS02 rna ? GO:0003735 ... Q72I20 23812722
    178745 4v9j:BT (3.86) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    178746 4v9j:BT (3.86) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    178747 4v9j:BU (3.86) BS01 rna ? GO:0000027 ... Q72L76 23812722
    178748 4v9j:BV (3.86) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    178749 4v9j:BW (3.86) BS01 rna ? GO:0003735 ... Q72I09 23812722
    178750 4v9j:BX (3.86) BS01 rna ? GO:0000027 ... Q72I06 23812722
    178751 4v9j:BY (3.86) BS01 rna ? GO:0003723 ... Q72I15 23812722
    178752 4v9j:BZ (3.86) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    178753 4v9j:BZ (3.86) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    178754 4v9j:CB (3.86) BS01 rna ? GO:0003735 ... P62662 23812722
    178755 4v9j:CD (3.86) BS01 rna ? GO:0003723 ... P62664 23812722
    178756 4v9j:CE (3.86) BS01 rna ? GO:0003723 ... P62665 23812722
    178757 4v9j:CF (3.86) BS01 rna ? GO:0003735 ... P62666 23812722
    178758 4v9j:CF (3.86) BS02 rna ? GO:0003735 ... P62666 23812722
    178759 4v9j:CG (3.86) BS01 rna ? GO:0000028 ... P62667 23812722
    178760 4v9j:CH (3.86) BS01 rna ? GO:0003735 ... P62668 23812722
    178761 4v9j:CI (3.86) BS01 rna ? GO:0000049 ... P62669 23812722
    178762 4v9j:CI (3.86) BS02 rna ? GO:0000049 ... P62669 23812722
    178763 4v9j:CJ (3.86) BS01 rna ? GO:0000049 ... P62653 23812722
    178764 4v9j:CK (3.86) BS01 rna ? GO:0003735 ... P62654 23812722
    178765 4v9j:CL (3.86) BS01 rna ? GO:0000049 ... P61941 23812722
    178766 4v9j:CM (3.86) BS01 rna ? GO:0000049 ... P62655 23812722
    178767 4v9j:CM (3.86) BS02 rna ? GO:0000049 ... P62655 23812722
    178768 4v9j:CN (3.86) BS01 rna ? GO:0003735 ... P62656 23812722
    178769 4v9j:CO (3.86) BS01 rna ? GO:0003735 ... P62657 23812722
    178770 4v9j:CO (3.86) BS02 rna ? GO:0003735 ... P62657 23812722
    178771 4v9j:CP (3.86) BS01 rna ? GO:0003735 ... P62238 23812722
    178772 4v9j:CQ (3.86) BS01 rna ? GO:0003735 ... P62658 23812722
    178773 4v9j:CR (3.86) BS01 rna ? GO:0003735 ... P62659 23812722
    178774 4v9j:CS (3.86) BS01 rna ? GO:0003723 ... P62660 23812722
    178775 4v9j:CS (3.86) BS02 rna ? GO:0003723 ... P62660 23812722
    178776 4v9j:CT (3.86) BS01 rna ? GO:0003723 ... P62661 23812722
    178777 4v9j:CY (3.86) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    178778 4v9j:CY (3.86) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    178779 4v9j:CY (3.86) BS03 MG ? GO:0003746 ... Q5SHN5 23812722
    178780 4v9j:CY (3.86) BS04 GNP ? GO:0003746 ... Q5SHN5 23812722
    178781 4v9j:D0 (3.86) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    178782 4v9j:D0 (3.86) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    178783 4v9j:D1 (3.86) BS01 rna ? GO:0003735 ... Q72G84 23812722
    178784 4v9j:D1 (3.86) BS02 rna ? GO:0003735 ... Q72G84 23812722
    178785 4v9j:D2 (3.86) BS01 rna ? GO:0003735 ... Q72I12 23812722
    178786 4v9j:D3 (3.86) BS01 rna ? GO:0003735 ... Q72I22 23812722
    178787 4v9j:D3 (3.86) BS02 rna ? GO:0003735 ... Q72I22 23812722
    178788 4v9j:D4 (3.86) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    178789 4v9j:D5 (3.86) BS01 rna ? GO:0003735 ... P62652 23812722
    178790 4v9j:D6 (3.86) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    178791 4v9j:D7 (3.86) BS01 rna ? GO:0003735 ... P80340 23812722
    178792 4v9j:D8 (3.86) BS01 rna ? GO:0003735 ... Q72L77 23812722
    178793 4v9j:D9 (3.86) BS01 rna ? GO:0003735 ... Q72I28 23812722
    178794 4v9j:DC (3.86) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    178795 4v9j:DC (3.86) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    178796 4v9j:DD (3.86) BS01 rna ? GO:0002181 ... Q72I07 23812722
    178797 4v9j:DE (3.86) BS01 rna ? GO:0003735 ... Q72I04 23812722
    178798 4v9j:DF (3.86) BS01 rna ? GO:0003735 ... Q72I05 23812722
    178799 4v9j:DG (3.86) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    178800 4v9j:DG (3.86) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417